Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Forward (+)

11022547 .. 11023446

Gene Structure 900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00290510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAGTTGCATGACTGCAATTCTTGTTATTGCAATATGTTTTGTTCAAGCCTTGTATGCAGGCCTCTCCACCATCACAATCCTTGCACTAGGGCAGTGCAAGAGCCACTACACCTCTGTGGTGTATCGTATAGCCATTAAAACTGCCCTGGCAAGTCCATTGGCATGGTATCTAGAGAGAAATTCTAGGCCTAAAATAACCATCAAGGTCATGGCAAAGATCATGCTGCTAGGCATGTTTGACCCTGTAATGAACTTAAACTTATACTATGCGGGCACGGATAACTCCAATGCCACATTCACATCTGCCATGGGCAACATGCTTCCGGTGTTAGCATTTGTCATGGCCTGGATTTTCAGGGTGGAGAATGTGGACTACAGACACCCGAGAGGATTGGCCAAGGTTCTAGGAACCATGGTTACTCTGGTAGGAGCAATCCTCCTTACCATGGTCAAGGGGCCTTCCTTCACCTTGCCATGGGCAAGGGACCGTGAGAAAAATCATTCTTCACAGCCCAAAGTCAAGGGTGCTGTATTTCTAACACTAGCCTGTTTCTGCTGCTCCTGTTTCATGATCCTACAAGTAAGTGTATGCAACTTAGGGATCGAGGTTGAGACTTGTGCTCTACATTGTTTGCCTCTGAGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

216

Amino Acids

23.78

Weight (kDa)

9.25

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	10 - 149	1.3e-09	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	272
AclWI	GGATC	2 cut(s)	568, 611
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	1 cut(s)	181
AfiI	CCNNNNNNNGG	2 cut(s)	448, 477
AgsI	TTSAA	1 cut(s)	47
AjnI	CCWGG	2 cut(s)	147, 347
AjuI	GAANNNNNNNTTGG	2 cut(s)	281, 313
AleI	CACNNNNGTG	1 cut(s)	116
AluBI	AGCT	1 cut(s)	648
AluI	AGCT	1 cut(s)	648
Alw21I	GWGCWC	1 cut(s)	625
Alw26I	GTCTC	1 cut(s)	608
AlwI	GGATC	2 cut(s)	568, 611
Ama87I	CYCGRG	1 cut(s)	385
AoxI	GGCC	5 cut(s)	61, 188, 345, 396, 458
ApeKI	GCWGC	2 cut(s)	226, 558
ApoI	RAATTY	1 cut(s)	181
AspS9I	GGNCC	2 cut(s)	458, 487
AsuHPI	GGTGA	1 cut(s)	460
AvaI	CYCGRG	1 cut(s)	385
AvaII	GGWCC	1 cut(s)	487
BaeGI	GKGCMC	1 cut(s)	278
BalI	TGGCCA	1 cut(s)	398
Bbv12I	GWGCWC	1 cut(s)	625
BbvI	GCAGC	2 cut(s)	213, 545
BccI	CCATC	2 cut(s)	80, 209
BciT130I	CCWGG	2 cut(s)	149, 349
BcoDI	GTCTC	1 cut(s)	608
BfaI	CTAG	6 cut(s)	89, 173, 186, 230, 407, 545
BfmI	CTRYAG	1 cut(s)	376
BisI	GCNGC	2 cut(s)	227, 559
BlsI	GCNGC	2 cut(s)	228, 560
Bme1390I	CCNGG	2 cut(s)	149, 349
Bme18I	GGWCC	1 cut(s)	487
BmeT110I	CYCGRG	1 cut(s)	385
BmgT120I	GGNCC	2 cut(s)	458, 487
BmiI	GGNNCC	3 cut(s)	412, 459, 488
BmrFI	CCNGG	2 cut(s)	149, 349
BplI	GAGNNNNNCTC	2 cut(s)	423, 455
BsaJI	CCNNGG	6 cut(s)	147, 309, 399, 414, 447, 476
BsaWI	WCCGGW	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	2 cut(s)	448, 477
BseBI	CCWGG	2 cut(s)	149, 349
BseDI	CCNNGG	6 cut(s)	147, 309, 399, 414, 447, 476
BseLI	CCNNNNNNNGG	2 cut(s)	448, 477
BseMII	CTCAG	1 cut(s)	632
BseSI	GKGCMC	1 cut(s)	278
BseXI	GCAGC	2 cut(s)	213, 545
BshFI	GGCC	5 cut(s)	63, 190, 347, 398, 460
BsiHKAI	GWGCWC	1 cut(s)	625
BsiHKCI	CYCGRG	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	326
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	2 cut(s)	448, 477
BsmAI	GTCTC	1 cut(s)	608
BsmFI	GGGAC	1 cut(s)	500
BsnI	GGCC	5 cut(s)	63, 190, 347, 398, 460
BsoBI	CYCGRG	1 cut(s)	385
Bsp1286I	GDGCHC	2 cut(s)	278, 625
Bsp143I	GATC	3 cut(s)	219, 573, 603
Bsp19I	CCATGG	4 cut(s)	309, 414, 447, 476
BspACI	CCGC	1 cut(s)	272
BspANI	GGCC	5 cut(s)	63, 190, 347, 398, 460
BspCNI	CTCAG	1 cut(s)	633
BspHI	TCATGA	1 cut(s)	570
BspLI	GGNNCC	3 cut(s)	412, 459, 488
BspPI	GGATC	2 cut(s)	568, 611
BssECI	CCNNGG	6 cut(s)	147, 309, 399, 414, 447, 476
BssMI	GATC	3 cut(s)	219, 573, 603
BssT1I	CCWWGG	5 cut(s)	309, 399, 414, 447, 476
Bst2UI	CCWGG	2 cut(s)	149, 349
Bst4CI	ACNGT	1 cut(s)	491
BstC8I	GCNNGC	2 cut(s)	61, 274
BstDEI	CTNAG	2 cut(s)	598, 641
BstDSI	CCRYGG	4 cut(s)	309, 414, 447, 476
BstKTI	GATC	3 cut(s)	222, 576, 606
BstMAI	GTCTC	1 cut(s)	608
BstMBI	GATC	3 cut(s)	219, 573, 603
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	2 cut(s)	149, 349
BstNSI	RCATGY	2 cut(s)	238, 322
BstSCI	CCNGG	2 cut(s)	147, 347
BstSFI	CTRYAG	1 cut(s)	376
BstSLI	GKGCMC	1 cut(s)	278
BstV1I	GCAGC	2 cut(s)	213, 545
BstXI	CCANNNNNNTGG	1 cut(s)	165
BsuRI	GGCC	5 cut(s)	63, 190, 347, 398, 460
BtgI	CCRYGG	4 cut(s)	309, 414, 447, 476
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	1 cut(s)	101
Cac8I	GCNNGC	2 cut(s)	61, 274
CciI	TCATGA	1 cut(s)	570
Cfr13I	GGNCC	2 cut(s)	458, 487
DdeI	CTNAG	2 cut(s)	598, 641
DpnI	GATC	3 cut(s)	221, 575, 605
DpnII	GATC	3 cut(s)	219, 573, 603
EaeI	YGGCCR	1 cut(s)	396
Eco130I	CCWWGG	5 cut(s)	309, 399, 414, 447, 476
Eco147I	AGGCCT	2 cut(s)	63, 190
Eco47I	GGWCC	1 cut(s)	487
Eco88I	CYCGRG	1 cut(s)	385
EcoO109I	RGGNCCY	1 cut(s)	458
EcoRII	CCWGG	2 cut(s)	147, 347
EcoT14I	CCWWGG	5 cut(s)	309, 399, 414, 447, 476
ErhI	CCWWGG	5 cut(s)	309, 399, 414, 447, 476
FaqI	GGGAC	1 cut(s)	500
FauI	CCCGC	1 cut(s)	265
Fnu4HI	GCNGC	2 cut(s)	227, 559
Fsp4HI	GCNGC	2 cut(s)	227, 559
FspBI	CTAG	6 cut(s)	89, 173, 186, 230, 407, 545
GluI	GCNGC	2 cut(s)	227, 559
HaeIII	GGCC	5 cut(s)	63, 190, 347, 398, 460
HapII	CCGG	1 cut(s)	326
HpaII	CCGG	1 cut(s)	326
HphI	GGTGA	1 cut(s)	460
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	1 cut(s)	642
Hpy188III	TCNNGA	2 cut(s)	173, 571
Hpy8I	GTNNAC	1 cut(s)	373
HpyAV	CCTTC	2 cut(s)	471, 475
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4V	TGCA	7 cut(s)	9, 17, 32, 59, 86, 99, 594
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	2 cut(s)	598, 641
Kzo9I	GATC	3 cut(s)	219, 573, 603
LmnI	GCTCC	3 cut(s)	431, 566, 645
Lsp1109I	GCAGC	2 cut(s)	213, 545
MaeI	CTAG	6 cut(s)	89, 173, 186, 230, 407, 545
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	3 cut(s)	221, 575, 605
MboI	GATC	3 cut(s)	219, 573, 603
MboII	GAAGA	1 cut(s)	498
MhlI	GDGCHC	2 cut(s)	278, 625
MlsI	TGGCCA	1 cut(s)	398
MluCI	AATT	2 cut(s)	18, 181
MluNI	TGGCCA	1 cut(s)	398
MnlI	CCTC	7 cut(s)	74, 124, 383, 449, 601, 636, 648
Mox20I	TGGCCA	1 cut(s)	398
MscI	TGGCCA	1 cut(s)	398
MseI	TTAA	2 cut(s)	138, 257
MslI	CAYNNNNRTG	2 cut(s)	116, 163
Msp20I	TGGCCA	1 cut(s)	398
MspI	CCGG	1 cut(s)	326
MspR9I	CCNGG	2 cut(s)	149, 349
MvaI	CCWGG	2 cut(s)	149, 349
MwoI	GCNNNNNNNGC	1 cut(s)	56
NcoI	CCATGG	4 cut(s)	309, 414, 447, 476
NdeII	GATC	3 cut(s)	219, 573, 603
NlaIV	GGNNCC	3 cut(s)	412, 459, 488
NspI	RCATGY	2 cut(s)	238, 322
OliI	CACNNNNGTG	1 cut(s)	116
PagI	TCATGA	1 cut(s)	570
PceI	AGGCCT	2 cut(s)	63, 190
PkrI	GCNGC	2 cut(s)	228, 560
Psp6I	CCWGG	2 cut(s)	147, 347
PspGI	CCWGG	2 cut(s)	147, 347
PspN4I	GGNNCC	3 cut(s)	412, 459, 488
PspPI	GGNCC	2 cut(s)	458, 487
PsrI	GAACNNNNNNTAC	2 cut(s)	403, 435
RseI	CAYNNNNRTG	2 cut(s)	116, 163
SaqAI	TTAA	2 cut(s)	138, 257
SatI	GCNGC	2 cut(s)	227, 559
Sau3AI	GATC	3 cut(s)	219, 573, 603
Sau96I	GGNCC	2 cut(s)	458, 487
ScrFI	CCNGG	2 cut(s)	149, 349
SduI	GDGCHC	2 cut(s)	278, 625
SetI	ASST	6 cut(s)	116, 210, 405, 473, 612, 650
SfcI	CTRYAG	1 cut(s)	376
SinI	GGWCC	1 cut(s)	487
SmiMI	CAYNNNNRTG	2 cut(s)	116, 163
Sse9I	AATT	2 cut(s)	18, 181
SseBI	AGGCCT	2 cut(s)	63, 190
SsiI	CCGC	1 cut(s)	272
SspMI	CTAG	6 cut(s)	89, 173, 186, 230, 407, 545
StuI	AGGCCT	2 cut(s)	63, 190
StyD4I	CCNGG	2 cut(s)	147, 347
StyI	CCWWGG	5 cut(s)	309, 399, 414, 447, 476
TaaI	ACNGT	1 cut(s)	491
TaqI	TCGA	1 cut(s)	606
TasI	AATT	2 cut(s)	18, 181
Tru1I	TTAA	2 cut(s)	138, 257
Tru9I	TTAA	2 cut(s)	138, 257
TscAI	CASTG	1 cut(s)	101
TseI	GCWGC	2 cut(s)	226, 558
TspDTI	ATGAA	2 cut(s)	266, 559
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	487
XapI	RAATTY	1 cut(s)	181
XbaI	TCTAGA	1 cut(s)	172
XceI	RCATGY	2 cut(s)	238, 322
XcmI	CCANNNNNNNNNTGG	2 cut(s)	208, 421
XspI	CTAG	6 cut(s)	89, 173, 186, 230, 407, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.