Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Reverse (-)

11058222 .. 11059342

Gene Structure 1121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00290530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAAGCACTCTACAGCCACTTTCTCATCTGCCATGTCCAACATTCTTCCTGCTTTTGCATTTTTAGTGGCCTGGATTTTCCGGCTGGAGGAGGTCAGCGTTAAGAATCTGCATGGCCTAGCAAAGGTCTTAGGAACTTTAATCACAGTTGGTGGAGCTATAATATTGACTCTAGTCAAAGGCCCTTTGAGTTTACCATGGGCCAAAGAGCAACATCCTCATCAACAATCGCAGAGTCACTCAGACGACAAGAACCTTGTTAAGGGCTTTATTCATGTCAGCAGCTTGTCTCTCCTGGGAATACTCTCAGGGGTTGCTTATTGTCTTATAGGGATTGTAGTGAAGGAAAGGGGACCTGTTTTCTATTCTGCTTTTCATCCCTTAGGCACTATAATCGTTGCAATTTTGGGCTCCTTTGTTTTAGCTGAGCAAATGTACCTTTGGAGTCTCACTGGAGCCATCATCATCATTGTTGGCCTACTTATGGTTTTATGGGGAAAAACCAATGACCAACCTCCATCTCAATCACAAGCACAAAGCGAAAATGGAGATGACCAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

187

Amino Acids

20.17

Weight (kDa)

7.06

Isoelectric Point (pI)

42.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	4 cut(s)	88, 124, 262, 484
AjnI	CCWGG	2 cut(s)	71, 294
AluBI	AGCT	3 cut(s)	158, 285, 425
AluI	AGCT	3 cut(s)	158, 285, 425
Alw26I	GTCTC	2 cut(s)	294, 452
AoxI	GGCC	5 cut(s)	69, 115, 181, 201, 475
ApeKI	GCWGC	1 cut(s)	282
AspS9I	GGNCC	3 cut(s)	182, 201, 353
AvaII	GGWCC	1 cut(s)	353
AxyI	CCTNAGG	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	413
BbvI	GCAGC	1 cut(s)	294
BccI	CCATC	2 cut(s)	467, 526
BcgI	CGANNNNNNTGC	2 cut(s)	376, 410
BciT130I	CCWGG	2 cut(s)	73, 296
BcoDI	GTCTC	2 cut(s)	294, 452
BfaI	CTAG	3 cut(s)	119, 173, 562
BfmI	CTRYAG	1 cut(s)	12
BisI	GCNGC	1 cut(s)	283
BlpI	GCTNAGC	1 cut(s)	426
BlsI	GCNGC	1 cut(s)	284
Bme1390I	CCNGG	2 cut(s)	73, 296
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	3 cut(s)	182, 201, 353
BmiI	GGNNCC	3 cut(s)	354, 412, 457
BmrFI	CCNGG	2 cut(s)	73, 296
BoxI	GACNNNNGTC	1 cut(s)	173
BpmI	CTGGAG	2 cut(s)	107, 474
Bpu1102I	GCTNAGC	1 cut(s)	426
BsaJI	CCNNGG	2 cut(s)	197, 295
Bsc4I	CCNNNNNNNGG	4 cut(s)	88, 124, 262, 484
Bse1I	ACTGG	1 cut(s)	457
Bse21I	CCTNAGG	1 cut(s)	382
BseBI	CCWGG	2 cut(s)	73, 296
BseDI	CCNNGG	2 cut(s)	197, 295
BseGI	GGATG	2 cut(s)	214, 376
BseLI	CCNNNNNNNGG	4 cut(s)	88, 124, 262, 484
BseMII	CTCAG	3 cut(s)	255, 321, 417
BseNI	ACTGG	1 cut(s)	457
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	294
BshFI	GGCC	5 cut(s)	71, 117, 183, 203, 477
BsiSI	CCGG	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	366
BslI	CCNNNNNNNGG	4 cut(s)	88, 124, 262, 484
BsmAI	GTCTC	2 cut(s)	294, 452
BsmFI	GGGAC	1 cut(s)	366
BsnI	GGCC	5 cut(s)	71, 117, 183, 203, 477
Bsp1286I	GDGCHC	1 cut(s)	413
Bsp1720I	GCTNAGC	1 cut(s)	426
Bsp19I	CCATGG	1 cut(s)	197
BspANI	GGCC	5 cut(s)	71, 117, 183, 203, 477
BspCNI	CTCAG	3 cut(s)	254, 320, 418
BspLI	GGNNCC	3 cut(s)	354, 412, 457
BsrI	ACTGG	1 cut(s)	457
BssECI	CCNNGG	2 cut(s)	197, 295
BssT1I	CCWWGG	1 cut(s)	197
Bst2UI	CCWGG	2 cut(s)	73, 296
Bst4CI	ACNGT	1 cut(s)	148
BstDEI	CTNAG	5 cut(s)	130, 241, 307, 382, 426
BstDSI	CCRYGG	1 cut(s)	197
BstENI	CCTNNNNNAGG	2 cut(s)	122, 260
BstF5I	GGATG	2 cut(s)	214, 376
BstMAI	GTCTC	2 cut(s)	294, 452
BstNI	CCWGG	2 cut(s)	73, 296
BstPAI	GACNNNNGTC	1 cut(s)	173
BstSCI	CCNGG	2 cut(s)	71, 294
BstSFI	CTRYAG	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	294
Bsu36I	CCTNAGG	1 cut(s)	382
BsuRI	GGCC	5 cut(s)	71, 117, 183, 203, 477
BtgI	CCRYGG	1 cut(s)	197
BtsCI	GGATG	2 cut(s)	214, 376
BtsIMutI	CAGTG	1 cut(s)	450
Cfr13I	GGNCC	3 cut(s)	182, 201, 353
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	4 cut(s)	34, 113, 198, 275
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	5 cut(s)	130, 241, 307, 382, 426
Eco130I	CCWWGG	1 cut(s)	197
Eco24I	GRGCYC	1 cut(s)	413
Eco47I	GGWCC	1 cut(s)	353
Eco81I	CCTNAGG	1 cut(s)	382
EcoNI	CCTNNNNNAGG	2 cut(s)	122, 260
EcoO109I	RGGNCCY	2 cut(s)	182, 353
EcoRII	CCWGG	2 cut(s)	71, 294
EcoT14I	CCWWGG	1 cut(s)	197
EcoT38I	GRGCYC	1 cut(s)	413
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	4 cut(s)	37, 116, 201, 278
FaiI	YATR	9 cut(s)	35, 114, 161, 199, 276, 329, 392, 485, 493
FaqI	GGGAC	1 cut(s)	366
FatI	CATG	4 cut(s)	33, 112, 197, 274
Fnu4HI	GCNGC	1 cut(s)	283
FokI	GGATG	2 cut(s)	201, 363
FriOI	GRGCYC	1 cut(s)	413
Fsp4HI	GCNGC	1 cut(s)	283
FspBI	CTAG	3 cut(s)	119, 173, 562
GluI	GCNGC	1 cut(s)	283
GsuI	CTGGAG	2 cut(s)	107, 474
HaeIII	GGCC	5 cut(s)	71, 117, 183, 203, 477
HapII	CCGG	1 cut(s)	82
Hin1II	CATG	4 cut(s)	37, 116, 201, 278
HinfI	GANTC	4 cut(s)	106, 169, 235, 445
HpaII	CCGG	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	1 cut(s)	244
Hpy8I	GTNNAC	1 cut(s)	194
HpyAV	CCTTC	1 cut(s)	337
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4V	TGCA	3 cut(s)	59, 112, 401
HpyF3I	CTNAG	5 cut(s)	130, 241, 307, 382, 426
Hsp92II	CATG	4 cut(s)	37, 116, 201, 278
LmnI	GCTCC	3 cut(s)	155, 416, 455
Lsp1109I	GCAGC	1 cut(s)	294
MaeI	CTAG	3 cut(s)	119, 173, 562
MaeIII	GTNAC	1 cut(s)	236
MboII	GAAGA	1 cut(s)	38
MhlI	GDGCHC	1 cut(s)	413
MluCI	AATT	1 cut(s)	402
MlyI	GAGTC	3 cut(s)	163, 244, 454
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	4 cut(s)	82, 85, 228, 525
MseI	TTAA	3 cut(s)	102, 140, 261
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	2 cut(s)	73, 296
MvaI	CCWGG	2 cut(s)	73, 296
NcoI	CCATGG	1 cut(s)	197
NlaIII	CATG	4 cut(s)	37, 116, 201, 278
NlaIV	GGNNCC	3 cut(s)	354, 412, 457
NmuCI	GTSAC	1 cut(s)	236
PfeI	GAWTC	1 cut(s)	106
PkrI	GCNGC	1 cut(s)	284
PleI	GAGTC	3 cut(s)	163, 243, 453
PpsI	GAGTC	3 cut(s)	163, 243, 453
PpuMI	RGGWCCY	1 cut(s)	353
PshAI	GACNNNNGTC	1 cut(s)	173
Psp5II	RGGWCCY	1 cut(s)	353
Psp6I	CCWGG	2 cut(s)	71, 294
PspGI	CCWGG	2 cut(s)	71, 294
PspN4I	GGNNCC	3 cut(s)	354, 412, 457
PspPI	GGNCC	3 cut(s)	182, 201, 353
PspPPI	RGGWCCY	1 cut(s)	353
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
SaqAI	TTAA	3 cut(s)	102, 140, 261
SatI	GCNGC	1 cut(s)	283
Sau96I	GGNCC	3 cut(s)	182, 201, 353
SchI	GAGTC	3 cut(s)	163, 244, 454
ScrFI	CCNGG	2 cut(s)	73, 296
SduI	GDGCHC	1 cut(s)	413
SetI	ASST	9 cut(s)	96, 129, 160, 258, 287, 358, 427, 441, 517
SfcI	CTRYAG	1 cut(s)	12
SinI	GGWCC	1 cut(s)	353
Sse9I	AATT	1 cut(s)	402
SspI	AATATT	1 cut(s)	165
SspMI	CTAG	3 cut(s)	119, 173, 562
StyD4I	CCNGG	2 cut(s)	71, 294
StyI	CCWWGG	1 cut(s)	197
TaaI	ACNGT	1 cut(s)	148
TasI	AATT	1 cut(s)	402
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	3 cut(s)	102, 140, 261
Tru9I	TTAA	3 cut(s)	102, 140, 261
TscAI	CASTG	1 cut(s)	457
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	1 cut(s)	282
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	3 cut(s)	17, 263, 365
TspRI	CASTG	1 cut(s)	457
VpaK11BI	GGWCC	1 cut(s)	353
XagI	CCTNNNNNAGG	2 cut(s)	122, 260
XspI	CTAG	3 cut(s)	119, 173, 562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.