Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Forward (+)

12930957 .. 12932576

Gene Structure 1620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017114

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGTTTATGGGGTTGATCCGCCGGGCAAAGCTTGTGTTAGCTGTGATTTTGGTGCAGCTCGGGTATGCTGGGCTTTCGATAATCTCAATGTTTGCTCTAAAGAAGGGAATGAGTCCTTACACATTCATCGTGTACCGAATGGCCATTGCCACTATTGTTCTAGCTCCATTTGCATTCATTTTGGAGAGGAATTCAAGACCTCAGATGACTTGGTCCATCACTGCAAAGATAATGTTGCTGAGCCTTTTCGACCCTGTGCTTGACCAGAACCTGTACTACATGGGAATGAAGAATTCGAGTGCAACGTTCACTTCTGCAATGTGCAATATGCTGCCTGCTTTTGCATTTTGTCTGGCCTGGATTTTTAGGTTTGAGAAGGTTAGCCTTAAGAAACTGCACAGCATAGCAAAGGTGATGGGGACGGTCATCACAGTCGGGGGAGCAACTATCTTGACTCTAGTTAGAGGTCCCTCTTTGTGTCTACCATGGGCCAATGAAGAAGAAATAAATCCTCATCAATCTGCGCAATACTGTTCGGGTCAGAGAGACCTTGTGAAAGGAGCTCTATTTATCTCAGGAGCTTGCTTCTGCTGGTCTTGGTTTGTCATTTTGCAAGCAATTATCTTAAGATCCTACCCTTGTCAGCTCTCTCTCACAGCAATGATATGCTTTTGGGGTATGGTGGAAGGAGCAATACTGGCTTTTGTAGTTGAAATGGGACATAGTGGAGCAATGCAATCTGTTGTTGCTTATTATGTGATGGGAATGGTAGTGAAGGAAAAGGGACCTGTTTTTTACTCGGCTTTTAATCCCTTGGCCACAGTAATGGTTGCAATCCTGGGTTCCTTTGTTTTAGCAGAACAATTGTACCTTGGGAGTGTTATCGGAGCTGTTGTAATCATCATTGGTCTGTATCTCATTCTCTGGGGAAAAGCAAAGGACCAGTCTCCTCCATCACAGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

322

Amino Acids

35.32

Weight (kDa)

9.19

Isoelectric Point (pI)

40.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	12 - 143	8.9e-16	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	525
AccI	GTMKAC	1 cut(s)	481
AciI	CCGC	1 cut(s)	19
AclI	AACGTT	1 cut(s)	305
AclWI	GGATC	2 cut(s)	10, 624
AcoI	YGGCCR	2 cut(s)	141, 816
AcsI	RAATTY	2 cut(s)	190, 292
AfaI	GTAC	3 cut(s)	134, 275, 869
AflII	CTTAAG	2 cut(s)	386, 625
AgsI	TTSAA	2 cut(s)	195, 713
AjnI	CCWGG	2 cut(s)	356, 837
AluBI	AGCT	8 cut(s)	31, 41, 58, 164, 563, 581, 646, 890
AluI	AGCT	8 cut(s)	31, 41, 58, 164, 563, 581, 646, 890
Alw21I	GWGCWC	1 cut(s)	565
Alw26I	GTCTC	2 cut(s)	540, 951
AlwI	GGATC	2 cut(s)	10, 624
AlwNI	CAGNNNCTG	1 cut(s)	271
Ama87I	CYCGRG	1 cut(s)	59
AoxI	GGCC	4 cut(s)	141, 354, 489, 816
ApeKI	GCWGC	2 cut(s)	55, 331
ApoI	RAATTY	2 cut(s)	190, 292
ArsI	GACNNNNNNTTYG	2 cut(s)	929, 961
AspLEI	GCGC	1 cut(s)	526
AspS9I	GGNCC	5 cut(s)	213, 467, 489, 785, 940
AsuC2I	CCSGG	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	424
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	4 cut(s)	213, 467, 785, 940
BaeI	ACNNNNGTAYC	2 cut(s)	851, 884
BalI	TGGCCA	2 cut(s)	143, 818
BanII	GRGCYC	1 cut(s)	565
BarI	GAAGNNNNNNTAC	2 cut(s)	678, 710
Bbv12I	GWGCWC	1 cut(s)	565
BbvI	GCAGC	2 cut(s)	67, 318
BccI	CCATC	4 cut(s)	224, 409, 754, 961
BciT130I	CCWGG	2 cut(s)	358, 839
BcnI	CCSGG	1 cut(s)	23
BcoDI	GTCTC	2 cut(s)	540, 951
BfaI	CTAG	2 cut(s)	161, 458
BfrI	CTTAAG	2 cut(s)	386, 625
BisI	GCNGC	2 cut(s)	56, 332
BlpI	GCTNAGC	1 cut(s)	239
BlsI	GCNGC	2 cut(s)	57, 333
Bme1390I	CCNGG	3 cut(s)	23, 358, 839
Bme18I	GGWCC	4 cut(s)	213, 467, 785, 940
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	5 cut(s)	213, 467, 489, 785, 940
BmiI	GGNNCC	3 cut(s)	469, 786, 844
BmrFI	CCNGG	3 cut(s)	23, 358, 839
Bpu1102I	GCTNAGC	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	540
BsaJI	CCNNGG	4 cut(s)	485, 813, 838, 871
BsaXI	ACNNNNNCTCC	2 cut(s)	879, 909
Bse1I	ACTGG	2 cut(s)	702, 943
Bse3DI	GCAATG	4 cut(s)	144, 324, 666, 738
BseBI	CCWGG	2 cut(s)	358, 839
BseDI	CCNNGG	4 cut(s)	485, 813, 838, 871
BseMI	GCAATG	4 cut(s)	144, 324, 666, 738
BseMII	CTCAG	3 cut(s)	215, 230, 588
BseNI	ACTGG	2 cut(s)	702, 943
BseRI	GAGGAG	1 cut(s)	939
BseXI	GCAGC	2 cut(s)	67, 318
BseYI	CCCAGC	1 cut(s)	68
BsgI	GTGCAG	2 cut(s)	74, 380
BshFI	GGCC	4 cut(s)	143, 356, 491, 818
BsiHKAI	GWGCWC	1 cut(s)	565
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	22
BslFI	GGGAC	4 cut(s)	433, 453, 732, 798
BsmAI	GTCTC	2 cut(s)	540, 951
BsmFI	GGGAC	4 cut(s)	433, 453, 732, 798
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	4 cut(s)	143, 356, 491, 818
Bso31I	GGTCTC	1 cut(s)	540
BsoBI	CYCGRG	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	565
Bsp143I	GATC	2 cut(s)	15, 629
Bsp1720I	GCTNAGC	1 cut(s)	239
Bsp19I	CCATGG	1 cut(s)	485
BspACI	CCGC	1 cut(s)	19
BspANI	GGCC	4 cut(s)	143, 356, 491, 818
BspCNI	CTCAG	3 cut(s)	214, 231, 587
BspLI	GGNNCC	3 cut(s)	469, 786, 844
BspPI	GGATC	2 cut(s)	10, 624
BspTI	CTTAAG	2 cut(s)	386, 625
BspTNI	GGTCTC	1 cut(s)	540
BsrDI	GCAATG	4 cut(s)	144, 324, 666, 738
BsrI	ACTGG	2 cut(s)	702, 943
BssECI	CCNNGG	4 cut(s)	485, 813, 838, 871
BssMI	GATC	2 cut(s)	15, 629
BssT1I	CCWWGG	3 cut(s)	485, 813, 871
Bst2UI	CCWGG	2 cut(s)	358, 839
Bst4CI	ACNGT	5 cut(s)	424, 433, 533, 823, 960
BstAFI	CTTAAG	2 cut(s)	386, 625
BstC8I	GCNNGC	3 cut(s)	336, 583, 615
BstDEI	CTNAG	3 cut(s)	201, 239, 574
BstDSI	CCRYGG	1 cut(s)	485
BstHHI	GCGC	1 cut(s)	526
BstKTI	GATC	2 cut(s)	18, 632
BstMAI	GTCTC	2 cut(s)	540, 951
BstMBI	GATC	2 cut(s)	15, 629
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 698
BstNI	CCWGG	2 cut(s)	358, 839
BstSCI	CCNGG	3 cut(s)	21, 356, 837
BstV1I	GCAGC	2 cut(s)	67, 318
BstX2I	RGATCY	1 cut(s)	629
BstXI	CCANNNNNNTGG	1 cut(s)	826
BstYI	RGATCY	1 cut(s)	629
BsuRI	GGCC	4 cut(s)	143, 356, 491, 818
BtgI	CCRYGG	1 cut(s)	485
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	2 cut(s)	219, 965
Cac8I	GCNNGC	3 cut(s)	336, 583, 615
CaiI	CAGNNNCTG	1 cut(s)	271
CfoI	GCGC	1 cut(s)	526
Cfr13I	GGNCC	5 cut(s)	213, 467, 489, 785, 940
Csp6I	GTAC	3 cut(s)	133, 274, 868
CviAII	CATG	2 cut(s)	280, 486
CviQI	GTAC	3 cut(s)	133, 274, 868
DdeI	CTNAG	3 cut(s)	201, 239, 574
DpnI	GATC	2 cut(s)	17, 631
DpnII	GATC	2 cut(s)	15, 629
EaeI	YGGCCR	2 cut(s)	141, 816
EciI	GGCGGA	1 cut(s)	8
Ecl136II	GAGCTC	1 cut(s)	563
Eco130I	CCWWGG	3 cut(s)	485, 813, 871
Eco24I	GRGCYC	1 cut(s)	565
Eco31I	GGTCTC	1 cut(s)	540
Eco47I	GGWCC	4 cut(s)	213, 467, 785, 940
Eco53kI	GAGCTC	1 cut(s)	563
Eco88I	CYCGRG	1 cut(s)	59
EcoICRI	GAGCTC	1 cut(s)	563
EcoO109I	RGGNCCY	2 cut(s)	467, 785
EcoRI	GAATTC	2 cut(s)	190, 292
EcoRII	CCWGG	2 cut(s)	356, 837
EcoT14I	CCWWGG	3 cut(s)	485, 813, 871
EcoT38I	GRGCYC	1 cut(s)	565
ErhI	CCWWGG	3 cut(s)	485, 813, 871
FaeI	CATG	2 cut(s)	283, 489
FaqI	GGGAC	4 cut(s)	433, 453, 732, 798
FatI	CATG	2 cut(s)	279, 485
FblI	GTMKAC	1 cut(s)	481
Fnu4HI	GCNGC	2 cut(s)	56, 332
FriOI	GRGCYC	1 cut(s)	565
Fsp4HI	GCNGC	2 cut(s)	56, 332
FspBI	CTAG	2 cut(s)	161, 458
FspI	TGCGCA	1 cut(s)	525
GlaI	GCGC	1 cut(s)	525
GluI	GCNGC	2 cut(s)	56, 332
GsaI	CCCAGC	1 cut(s)	72
HaeIII	GGCC	4 cut(s)	143, 356, 491, 818
HapII	CCGG	1 cut(s)	22
HhaI	GCGC	1 cut(s)	526
Hin1II	CATG	2 cut(s)	283, 489
Hin6I	GCGC	1 cut(s)	524
HinP1I	GCGC	1 cut(s)	524
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	2 cut(s)	112, 454
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	3 cut(s)	133, 309, 482
Hpy188I	TCNGA	3 cut(s)	204, 543, 887
Hpy188III	TCNNGA	3 cut(s)	195, 451, 576
Hpy8I	GTNNAC	3 cut(s)	133, 309, 482
HpyAV	CCTTC	4 cut(s)	97, 370, 680, 769
HpyCH4III	ACNGT	5 cut(s)	424, 433, 533, 823, 960
HpyCH4IV	ACGT	1 cut(s)	305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 698
HpyF3I	CTNAG	3 cut(s)	201, 239, 574
HpySE526I	ACGT	1 cut(s)	305
Hsp92II	CATG	2 cut(s)	283, 489
HspAI	GCGC	1 cut(s)	524
Kzo9I	GATC	2 cut(s)	15, 629
LmnI	GCTCC	7 cut(s)	169, 440, 560, 578, 689, 728, 887
Lsp1109I	GCAGC	2 cut(s)	67, 318
MaeI	CTAG	2 cut(s)	161, 458
MaeII	ACGT	1 cut(s)	305
MalI	GATC	2 cut(s)	17, 631
MboI	GATC	2 cut(s)	15, 629
MboII	GAAGA	3 cut(s)	301, 509, 512
MfeI	CAATTG	1 cut(s)	863
MflI	RGATCY	1 cut(s)	629
MhlI	GDGCHC	1 cut(s)	565
MlsI	TGGCCA	2 cut(s)	143, 818
MluCI	AATT	4 cut(s)	190, 292, 618, 863
MluNI	TGGCCA	2 cut(s)	143, 818
MlyI	GAGTC	2 cut(s)	121, 448
MnlI	CCTC	6 cut(s)	180, 210, 458, 481, 522, 960
Mox20I	TGGCCA	2 cut(s)	143, 818
MscI	TGGCCA	2 cut(s)	143, 818
MseI	TTAA	3 cut(s)	387, 626, 807
MslI	CAYNNNNRTG	4 cut(s)	284, 659, 824, 958
Msp20I	TGGCCA	2 cut(s)	143, 818
MspCI	CTTAAG	2 cut(s)	386, 625
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	3 cut(s)	23, 358, 839
MunI	CAATTG	1 cut(s)	863
Mva1269I	GAATGC	1 cut(s)	173
MvaI	CCWGG	2 cut(s)	358, 839
MwoI	GCNNNNNNNGC	2 cut(s)	170, 698
NciI	CCSGG	1 cut(s)	23
NcoI	CCATGG	1 cut(s)	485
NdeII	GATC	2 cut(s)	15, 629
NlaIII	CATG	2 cut(s)	283, 489
NlaIV	GGNNCC	3 cut(s)	469, 786, 844
NmeAIII	GCCGAG	1 cut(s)	779
NsbI	TGCGCA	1 cut(s)	525
PcsI	WCGNNNNNNNCGW	1 cut(s)	302
PctI	GAATGC	1 cut(s)	173
PflFI	GACNNNGTC	1 cut(s)	211
PkrI	GCNGC	2 cut(s)	57, 333
PleI	GAGTC	2 cut(s)	120, 448
PpsI	GAGTC	2 cut(s)	120, 448
PpuMI	RGGWCCY	2 cut(s)	467, 785
Psp124BI	GAGCTC	1 cut(s)	565
Psp1406I	AACGTT	1 cut(s)	305
Psp5II	RGGWCCY	2 cut(s)	467, 785
Psp6I	CCWGG	2 cut(s)	356, 837
PspFI	CCCAGC	1 cut(s)	68
PspGI	CCWGG	2 cut(s)	356, 837
PspN4I	GGNNCC	3 cut(s)	469, 786, 844
PspPI	GGNCC	5 cut(s)	213, 467, 489, 785, 940
PspPPI	RGGWCCY	2 cut(s)	467, 785
PsrI	GAACNNNNNNTAC	2 cut(s)	260, 292
PstNI	CAGNNNCTG	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	629
PsyI	GACNNNGTC	1 cut(s)	211
RsaI	GTAC	3 cut(s)	134, 275, 869
RsaNI	GTAC	3 cut(s)	133, 274, 868
RseI	CAYNNNNRTG	4 cut(s)	284, 659, 824, 958
SacI	GAGCTC	1 cut(s)	565
SaqAI	TTAA	3 cut(s)	387, 626, 807
SatI	GCNGC	2 cut(s)	56, 332
Sau3AI	GATC	2 cut(s)	15, 629
Sau96I	GGNCC	5 cut(s)	213, 467, 489, 785, 940
SchI	GAGTC	2 cut(s)	121, 448
ScrFI	CCNGG	3 cut(s)	23, 358, 839
SduI	GDGCHC	1 cut(s)	565
SinI	GGWCC	4 cut(s)	213, 467, 785, 940
SmiMI	CAYNNNNRTG	4 cut(s)	284, 659, 824, 958
SmlI	CTYRAG	2 cut(s)	386, 625
SmoI	CTYRAG	2 cut(s)	386, 625
Sse9I	AATT	4 cut(s)	190, 292, 618, 863
SsiI	CCGC	1 cut(s)	19
SspMI	CTAG	2 cut(s)	161, 458
SstI	GAGCTC	1 cut(s)	565
StyD4I	CCNGG	3 cut(s)	21, 356, 837
StyI	CCWWGG	3 cut(s)	485, 813, 871
TaaI	ACNGT	5 cut(s)	424, 433, 533, 823, 960
TaiI	ACGT	1 cut(s)	308
TaqI	TCGA	3 cut(s)	77, 249, 296
TasI	AATT	4 cut(s)	190, 292, 618, 863
TatI	WGTACW	1 cut(s)	273
Tru1I	TTAA	3 cut(s)	387, 626, 807
Tru9I	TTAA	3 cut(s)	387, 626, 807
TscAI	CASTG	2 cut(s)	226, 965
TseI	GCWGC	2 cut(s)	55, 331
TspDTI	ATGAA	4 cut(s)	115, 166, 302, 510
TspRI	CASTG	2 cut(s)	226, 965
Tth111I	GACNNNGTC	1 cut(s)	211
Vha464I	CTTAAG	2 cut(s)	386, 625
VpaK11BI	GGWCC	4 cut(s)	213, 467, 785, 940
XapI	RAATTY	2 cut(s)	190, 292
XmiI	GTMKAC	1 cut(s)	481
XspI	CTAG	2 cut(s)	161, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.