Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Forward (+)

44677839 .. 44680217

Gene Structure 2379 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0327300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2379 bp

ATGCGCCATGGAAGGCCTCTATTCCAACCCAAACCCCACATCGGCGCTGCTGCTTCTGAACTTGGAGACATACTCCTGGTGGCCTCCATCACCAAGACCCTCTCCCAGTCCGGCACCCGCAACCTCCCCCACCCTCCTCCTCCTCCTCTCTCCGACCCTCTCCTCCTCCAAATCCTCCGCACCCAATCCCTCCACCCCTCCAAGAAACTCGACTTCTTCAAATGGTCCTCTCTCACCCATTCCATCAAACACTCCCCCGCCACTTTCTCCCACATCCTCCGCACCGCCTGCCGCGCCGGGTTCCTCTCCGAAATCCCCGGACTACTCAACATCATGAAACGTCATGCTGTAATAGTCGATTCCGGAACCTTCAAGTCTTTGCTGGACGCCTTCATCAGGGCAGGTAAGTTTGACATGGCAATCGAAATTTTAGACATTATGCAAGAACTGGGTGCTGAGCTGAGTACGGATATGTACAACTCGGTGTTGGTTGCTTTGGTTAGGAAGGGTCAGTTGGGTTTGGCTATGTCTATTCTGGTTAAGCTTCTAGAAGGTGGGTCTTCTCAAGTACCCAATTGCATTGCCTGTAATGAGTTGTTGGTGGGTCTTAGGAAAGGTGACATGAGGGTAGAGTTTAAGCAGGTGTTTGATAAGCTTAGGGGGAATGAGTGGTTTGAGATGGATACTTGGGGTTATAACATATGTATTCATGCGTTTGGGTGTTGGGGTGATCTGGGTACTAGTTTGAGTCTGTTTAAAGAGATGAAAGAGTTGAACTCCGACTCGGTTTTCCCTGATTTGTCTACTTATAATAGCCTCATTCATGTGCTGTGTTTGGTTGGGAAGGTGGATGATGCAGTTACTGTGTGGGAGGAGTTGAAGTGTTCTGGTCATGAGCCGGATGCCATTACATATCGGATTCTTATTCAGGGGTGTTGCAAGTGTTATCGAATAGAGGAAGCTACCAAGATTTTTAGTGAAATGCAGAACAATGGGTACAATCCTGATACGGTTGTTTATAATTCGTTGATGGATGGGTTGTTCAAGGCGAGGAAAATTAATGAAGGGTGTCAGATGTTTGAGAGGATGGTTCAGTATGGGGTGAGAGCCTCGACGTGGACGTATAATATTCTGATTGATGGGTTGTTTAGGAATGCAAGGGTCGAGGCTGCTTACACTATATTTTGTGACTTGAAGAAGAAGGGTCAGTTTGTGGATGGTGTTACGTATAGCATTGTTGTTCTGCAACTTTGTAGGGAGGGTCTGCTCGAGGAGGCGCTAGAATTGGTGGAAGAAATGGAAATGCGAGGCTTTACTGTTGATTTGGTTACTATATCAACACTCATGATTGGGCTGTATAAGCATAGTCGATGGGATTGGACAGACAAGCTCATGAAGCGTATTAGGGATGGTAATCTGCTGCCTAGTGTTCTTAGATGGAAAGTCGATATGGAAGCTACAATGAAAGCTCCACAGAGCAAGAAAAAGGACCTTACACCACTGTTCCCAAGTAAAGGTGATTTCAGCGACGTTTTGAGTCTAATAAGTTCTGCTGCCTCGAAAATGGATGGAGACATTGAATCAGATGATGCTGGGGTTAAAGATGATAATACTTCGTCTACAGATATTGATCAGTGGTCATCATCTCCACATATGGATCACTTGGCCAATCAATTGAAGTCCATTGACCACGCCTCTCAGCTGTTTTCGCTATCTAGAGGGCAACGAGTTCAAGCCAAAGGAGAAAGCACTTTTGATATTGATATGGTAAATACTTTCTTATCCTTATTTTTGGCCAAGGGGAAGCTGAGCATAGCTTGCAAATTGTTTGAGATTTTCAGTGATGCGGGTGCAAACCCTGTGAGTTACACTTACAATTCCATCTTGAGTTCGTTTGTCAAGAAGGGCTACTTCAATGAGGCATGGGGTGTGCTCAGTGAAATGGGAGAAAAGGTTTGCCCCACAGATATAGCAACATACAATATGATAATTCAAGGTTTGGGGAAGATGGGAAGGGCTGATCTAGCCAGTAGTGTTCTGGATAAGCTAATGAAGCAGGGTGGTTATCTTGATGTTGTCATGTACAACACCTTGATTAATGCGCTGGGGAAGGCTAACCGGATTGACGAAGTAAACAAGCTATTTAAGCAGATGAAGAGTAGTGGAATAAATCCTGATGTTGTCACTTTCAATACGCTTATTGAAGTTCATAGTAAAGCAGGTCGACTGAAAGATGCGTATAAATTTCTGAAAATGATGCTGGATTCAGGCTGCACACCAAACCATGTCACTGACACCACTTTGGATTTTCTGGGGAAGGAGATTGAGAAATCGAGGTACCAAAAGGCATCATTTGTACGAAATAAGGATGACTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

792

Amino Acids

88.5

Weight (kDa)

6.64

Isoelectric Point (pI)

33.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	90 - 180	6.8e-07	Fungal tetratrico peptide repeats
TPR_24	PF23276	90 - 169	1.6e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	256 - 312	6.4e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	263 - 293	6e-09	PPR repeat
PPR_2	PF13041	265 - 314	4.1e-16	PPR repeat family
PPR_1	PF12854	297 - 329	7.1e-10	PPR repeat
PPR	PF01535	303 - 332	1.6e-06	PPR repeat
PPR_3	PF13812	323 - 380	1.4e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	331 - 364	3.9e-07	PPR repeat
PPR_2	PF13041	335 - 383	3.9e-14	PPR repeat family
PPR_2	PF13041	372 - 419	4.1e-11	PPR repeat family
PPR_1	PF12854	402 - 434	3e-07	PPR repeat
PPR	PF01535	408 - 438	8.1e-06	PPR repeat
PPR_2	PF13041	417 - 454	3.2e-06	PPR repeat family
PPR_2	PF13041	621 - 669	1.1e-11	PPR repeat family
PPR_3	PF13812	678 - 737	1.5e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	690 - 719	5e-07	PPR repeat
PPR_2	PF13041	691 - 734	1.8e-15	PPR repeat family
PPR	PF01535	693 - 723	3e-08	PPR repeat
PPR_3	PF13812	713 - 764	1.9e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	722 - 753	5.1e-10	PPR repeat
PPR_2	PF13041	725 - 768	3.3e-12	PPR repeat family
PPR	PF01535	728 - 758	3.1e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	696, 810, 1020
AarI	CACCTGC	1 cut(s)	631
Acc36I	ACCTGC	3 cut(s)	392, 631, 2210
Acc65I	GGTACC	1 cut(s)	2337
AccB1I	GGYRCC	2 cut(s)	113, 2337
AccI	GTMKAC	3 cut(s)	803, 1619, 2224
AccII	CGCG	1 cut(s)	294
AccIII	TCCGGA	1 cut(s)	362
AciI	CCGC	7 cut(s)	118, 178, 258, 280, 285, 292, 1847
AclWI	GGATC	1 cut(s)	1665
AcoI	YGGCCR	2 cut(s)	1665, 1794
AcsI	RAATTY	2 cut(s)	426, 2243
AcyI	GRCGYC	1 cut(s)	387
AfaI	GTAC	8 cut(s)	466, 476, 570, 739, 998, 2084, 2339, 2358
AfiI	CCNNNNNNNGG	4 cut(s)	41, 396, 1116, 1514
AhlI	ACTAGT	1 cut(s)	740
AjiI	CACGTC	1 cut(s)	1116
AjnI	CCWGG	1 cut(s)	75
AjuI	GAANNNNNNNTTGG	2 cut(s)	497, 529
AloI	GAACNNNNNNTCC	2 cut(s)	1025, 1057
Alw21I	GWGCWC	1 cut(s)	1935
Alw26I	GTCTC	2 cut(s)	60, 1566
AlwI	GGATC	1 cut(s)	1665
AlwNI	CAGNNNCTG	1 cut(s)	863
Ama87I	CYCGRG	1 cut(s)	1268
Aor13HI	TCCGGA	1 cut(s)	362
AoxI	GGCC	4 cut(s)	14, 81, 1665, 1794
ApeKI	GCWGC	6 cut(s)	47, 50, 1169, 1420, 1553, 2271
ApoI	RAATTY	2 cut(s)	426, 2243
AseI	ATTAAT	2 cut(s)	1059, 2097
Asp718I	GGTACC	1 cut(s)	2337
AspLEI	GCGC	5 cut(s)	6, 47, 296, 1279, 2104
AspS9I	GGNCC	2 cut(s)	225, 1489
AsuC2I	CCSGG	2 cut(s)	298, 318
AsuHPI	GGTGA	6 cut(s)	82, 226, 629, 740, 1114, 1529
AvaI	CYCGRG	1 cut(s)	1268
AvaII	GGWCC	2 cut(s)	225, 1489
BaeI	ACNNNNGTAYC	2 cut(s)	999, 1032
BalI	TGGCCA	2 cut(s)	1667, 1796
BanI	GGYRCC	2 cut(s)	113, 2337
BbsI	GAAGAC	1 cut(s)	552
Bbv12I	GWGCWC	1 cut(s)	1935
BbvI	GCAGC	6 cut(s)	34, 37, 1156, 1407, 1540, 2258
BciT130I	CCWGG	1 cut(s)	77
BciVI	GTATCC	1 cut(s)	676
BclI	TGATCA	1 cut(s)	1630
BcnI	CCSGG	2 cut(s)	298, 318
BcoDI	GTCTC	2 cut(s)	60, 1566
BcuI	ACTAGT	1 cut(s)	740
BfaI	CTAG	6 cut(s)	548, 741, 1280, 1425, 1716, 2024
BfmI	CTRYAG	1 cut(s)	1620
BfoI	RGCGCY	2 cut(s)	48, 1280
BfuAI	ACCTGC	3 cut(s)	392, 631, 2210
BfuI	GTATCC	1 cut(s)	676
BisI	GCNGC	7 cut(s)	48, 51, 292, 1170, 1421, 1554, 2272
BlpI	GCTNAGC	2 cut(s)	456, 1808
BlsI	GCNGC	7 cut(s)	49, 52, 293, 1171, 1422, 1555, 2273
Bme1390I	CCNGG	3 cut(s)	77, 298, 318
Bme18I	GGWCC	2 cut(s)	225, 1489
BmeT110I	CYCGRG	1 cut(s)	1268
BmgBI	CACGTC	1 cut(s)	1116
BmgT120I	GGNCC	2 cut(s)	225, 1489
BmiI	GGNNCC	4 cut(s)	115, 302, 367, 2339
BmrFI	CCNGG	3 cut(s)	77, 298, 318
BmrI	ACTGGG	2 cut(s)	100, 458
BmsI	GCATC	7 cut(s)	844, 892, 1579, 1834, 2224, 2247, 2357
BmuI	ACTGGG	2 cut(s)	100, 458
BpiI	GAAGAC	1 cut(s)	552
BplI	GAGNNNNNCTC	4 cut(s)	57, 89, 761, 793
Bpu10I	CCTNAGC	1 cut(s)	656
Bpu1102I	GCTNAGC	2 cut(s)	456, 1808
BpuEI	CTTGAG	2 cut(s)	549, 1906
BpuMI	CCSGG	2 cut(s)	298, 318
BsaAI	YACGTR	1 cut(s)	1227
BsaBI	GATNNNNATC	2 cut(s)	1413, 1629
BsaHI	GRCGYC	1 cut(s)	387
BsaJI	CCNNGG	3 cut(s)	7, 316, 1797
BsaWI	WCCGGW	2 cut(s)	362, 2118
BsaXI	ACNNNNNCTCC	4 cut(s)	866, 896, 1938, 1968
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 396, 1116, 1514
Bse1I	ACTGG	3 cut(s)	106, 453, 2028
Bse3DI	GCAATG	1 cut(s)	579
Bse8I	GATNNNNATC	2 cut(s)	1413, 1629
BseAI	TCCGGA	1 cut(s)	362
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	3 cut(s)	7, 316, 1797
BseGI	GGATG	9 cut(s)	273, 856, 907, 1039, 1092, 1222, 1414, 1573, 2374
BseJI	GATNNNNATC	2 cut(s)	1413, 1629
BseLI	CCNNNNNNNGG	4 cut(s)	41, 396, 1116, 1514
BseMI	GCAATG	1 cut(s)	579
BseMII	CTCAG	5 cut(s)	447, 452, 1712, 1799, 1948
BseNI	ACTGG	3 cut(s)	106, 453, 2028
BseRI	GAGGAG	8 cut(s)	126, 129, 132, 135, 152, 155, 887, 1286
BseXI	GCAGC	6 cut(s)	34, 37, 1156, 1407, 1540, 2258
BseYI	CCCAGC	2 cut(s)	1592, 2104
BsgI	GTGCAG	1 cut(s)	2257
Bsh1236I	CGCG	1 cut(s)	294
BshFI	GGCC	4 cut(s)	16, 83, 1667, 1796
BshNI	GGYRCC	2 cut(s)	113, 2337
BsiHKAI	GWGCWC	1 cut(s)	1935
BsiHKCI	CYCGRG	1 cut(s)	1268
BsiSI	CCGG	6 cut(s)	111, 297, 318, 363, 899, 2119
BslI	CCNNNNNNNGG	4 cut(s)	41, 396, 1116, 1514
BsmAI	GTCTC	2 cut(s)	60, 1566
BsmI	GAATGC	1 cut(s)	1159
BsnI	GGCC	4 cut(s)	16, 83, 1667, 1796
BsoBI	CYCGRG	1 cut(s)	1268
Bsp1286I	GDGCHC	1 cut(s)	1935
Bsp13I	TCCGGA	1 cut(s)	362
Bsp1407I	TGTACA	2 cut(s)	474, 2082
Bsp143I	GATC	4 cut(s)	730, 1630, 1657, 2020
Bsp1720I	GCTNAGC	2 cut(s)	456, 1808
Bsp19I	CCATGG	1 cut(s)	7
BspACI	CCGC	7 cut(s)	118, 178, 258, 280, 285, 292, 1847
BspANI	GGCC	4 cut(s)	16, 83, 1667, 1796
BspCNI	CTCAG	5 cut(s)	448, 453, 1711, 1800, 1947
BspEI	TCCGGA	1 cut(s)	362
BspFNI	CGCG	1 cut(s)	294
BspHI	TCATGA	4 cut(s)	333, 892, 1344, 1392
BspLI	GGNNCC	4 cut(s)	115, 302, 367, 2339
BspMI	ACCTGC	3 cut(s)	392, 631, 2210
BspPI	GGATC	1 cut(s)	1665
BspT107I	GGYRCC	2 cut(s)	113, 2337
BsrDI	GCAATG	1 cut(s)	579
BsrGI	TGTACA	2 cut(s)	474, 2082
BsrI	ACTGG	3 cut(s)	106, 453, 2028
BssECI	CCNNGG	3 cut(s)	7, 316, 1797
BssMI	GATC	4 cut(s)	730, 1630, 1657, 2020
BssNI	GRCGYC	1 cut(s)	387
BssT1I	CCWWGG	2 cut(s)	7, 1797
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	4 cut(s)	865, 1012, 1318, 1503
Bst6I	CTCTTC	1 cut(s)	2150
BstACI	GRCGYC	1 cut(s)	387
BstAPI	GCANNNNNTGC	2 cut(s)	288, 1818
BstAUI	TGTACA	2 cut(s)	474, 2082
BstBAI	YACGTR	1 cut(s)	1227
BstC8I	GCNNGC	2 cut(s)	289, 1819
BstDEI	CTNAG	8 cut(s)	456, 461, 608, 656, 1433, 1698, 1808, 1934
BstDSI	CCRYGG	1 cut(s)	7
BstENI	CCTNNNNNAGG	1 cut(s)	394
BstF5I	GGATG	9 cut(s)	273, 856, 907, 1039, 1092, 1222, 1414, 1573, 2374
BstFNI	CGCG	1 cut(s)	294
BstH2I	RGCGCY	2 cut(s)	48, 1280
BstHHI	GCGC	5 cut(s)	6, 47, 296, 1279, 2104
BstKTI	GATC	4 cut(s)	733, 1633, 1660, 2023
BstMAI	GTCTC	2 cut(s)	60, 1566
BstMBI	GATC	4 cut(s)	730, 1630, 1657, 2020
BstMWI	GCNNNNNNNGC	9 cut(s)	288, 293, 1360, 1396, 1708, 1818, 2024, 2053, 2146
BstNI	CCWGG	1 cut(s)	77
BstSCI	CCNGG	3 cut(s)	75, 296, 316
BstSFI	CTRYAG	1 cut(s)	1620
BstSNI	TACGTA	1 cut(s)	1227
BstUI	CGCG	1 cut(s)	294
BstV1I	GCAGC	6 cut(s)	34, 37, 1156, 1407, 1540, 2258
BstV2I	GAAGAC	1 cut(s)	552
BsuI	GTATCC	1 cut(s)	676
BsuRI	GGCC	4 cut(s)	16, 83, 1667, 1796
BtgI	CCRYGG	1 cut(s)	7
BtrI	CACGTC	1 cut(s)	1116
BtsCI	GGATG	9 cut(s)	273, 856, 907, 1039, 1092, 1222, 1414, 1573, 2374
BtsIMutI	CAGTG	5 cut(s)	1499, 1640, 1846, 1942, 2289
BveI	ACCTGC	3 cut(s)	392, 631, 2210
Cac8I	GCNNGC	2 cut(s)	289, 1819
CaiI	CAGNNNCTG	1 cut(s)	863
CciI	TCATGA	4 cut(s)	333, 892, 1344, 1392
CfoI	GCGC	5 cut(s)	6, 47, 296, 1279, 2104
Cfr13I	GGNCC	2 cut(s)	225, 1489
CseI	GACGC	1 cut(s)	395
Csp6I	GTAC	8 cut(s)	465, 475, 569, 738, 997, 2083, 2338, 2357
CviQI	GTAC	8 cut(s)	465, 475, 569, 738, 997, 2083, 2338, 2357
DdeI	CTNAG	8 cut(s)	456, 461, 608, 656, 1433, 1698, 1808, 1934
DpnI	GATC	4 cut(s)	732, 1632, 1659, 2022
DpnII	GATC	4 cut(s)	730, 1630, 1657, 2020
DraI	TTTAAA	1 cut(s)	757
EaeI	YGGCCR	2 cut(s)	1665, 1794
Eam1104I	CTCTTC	1 cut(s)	2150
EarI	CTCTTC	1 cut(s)	2150
Eco105I	TACGTA	1 cut(s)	1227
Eco130I	CCWWGG	2 cut(s)	7, 1797
Eco147I	AGGCCT	1 cut(s)	16
Eco47I	GGWCC	2 cut(s)	225, 1489
Eco88I	CYCGRG	1 cut(s)	1268
EcoNI	CCTNNNNNAGG	1 cut(s)	394
EcoO109I	RGGNCCY	1 cut(s)	1489
EcoRII	CCWGG	1 cut(s)	75
EcoT14I	CCWWGG	2 cut(s)	7, 1797
ErhI	CCWWGG	2 cut(s)	7, 1797
FalI	AAGNNNNNCTT	2 cut(s)	1895, 1927
FauI	CCCGC	3 cut(s)	125, 265, 1840
FauNDI	CATATG	2 cut(s)	701, 1653
FbaI	TGATCA	1 cut(s)	1630
FblI	GTMKAC	3 cut(s)	803, 1619, 2224
Fnu4HI	GCNGC	7 cut(s)	48, 51, 292, 1170, 1421, 1554, 2272
FokI	GGATG	8 cut(s)	260, 863, 914, 1046, 1099, 1229, 1421, 1580
Fsp4HI	GCNGC	7 cut(s)	48, 51, 292, 1170, 1421, 1554, 2272
FspBI	CTAG	6 cut(s)	548, 741, 1280, 1425, 1716, 2024
GlaI	GCGC	5 cut(s)	5, 46, 295, 1278, 2103
GluI	GCNGC	7 cut(s)	48, 51, 292, 1170, 1421, 1554, 2272
GsaI	CCCAGC	2 cut(s)	1596, 2108
HaeII	RGCGCY	2 cut(s)	48, 1280
HaeIII	GGCC	4 cut(s)	16, 83, 1667, 1796
HapII	CCGG	6 cut(s)	111, 297, 318, 363, 899, 2119
HgaI	GACGC	1 cut(s)	395
HhaI	GCGC	5 cut(s)	6, 47, 296, 1279, 2104
Hin1I	GRCGYC	1 cut(s)	387
Hin6I	GCGC	5 cut(s)	4, 45, 294, 1277, 2102
HinP1I	GCGC	5 cut(s)	4, 45, 294, 1277, 2102
HincII	GTYRAC	1 cut(s)	2225
HindII	GTYRAC	1 cut(s)	2225
HindIII	AAGCTT	2 cut(s)	542, 653
HinfI	GANTC	8 cut(s)	359, 748, 782, 919, 1537, 1580, 2264, 2372
HpaII	CCGG	6 cut(s)	111, 297, 318, 363, 899, 2119
HphI	GGTGA	6 cut(s)	82, 226, 629, 740, 1114, 1529
Hpy166II	GTNNAC	5 cut(s)	804, 1119, 1620, 2134, 2225
Hpy188I	TCNGA	9 cut(s)	58, 154, 310, 781, 918, 1074, 1134, 1585, 2250
Hpy8I	GTNNAC	5 cut(s)	804, 1119, 1620, 2134, 2225
Hpy99I	CGWCG	2 cut(s)	1117, 1532
HpyCH4III	ACNGT	4 cut(s)	865, 1012, 1318, 1503
HpyCH4IV	ACGT	5 cut(s)	340, 1115, 1121, 1226, 1530
HpyF10VI	GCNNNNNNNGC	9 cut(s)	288, 293, 1360, 1396, 1708, 1818, 2024, 2053, 2146
HpyF3I	CTNAG	8 cut(s)	456, 461, 608, 656, 1433, 1698, 1808, 1934
HpySE526I	ACGT	5 cut(s)	340, 1115, 1121, 1226, 1530
Hsp92I	GRCGYC	1 cut(s)	387
HspAI	GCGC	5 cut(s)	4, 45, 294, 1277, 2102
Kpn2I	TCCGGA	1 cut(s)	362
KpnI	GGTACC	1 cut(s)	2341
Ksp22I	TGATCA	1 cut(s)	1630
Kzo9I	GATC	4 cut(s)	730, 1630, 1657, 2020
LmnI	GCTCC	1 cut(s)	1474
Lsp1109I	GCAGC	6 cut(s)	34, 37, 1156, 1407, 1540, 2258
LweI	GCATC	7 cut(s)	844, 892, 1579, 1834, 2224, 2247, 2357
MaeI	CTAG	6 cut(s)	548, 741, 1280, 1425, 1716, 2024
MaeII	ACGT	5 cut(s)	340, 1115, 1121, 1226, 1530
MaeIII	GTNAC	8 cut(s)	617, 859, 1187, 1222, 1327, 1865, 2182, 2287
MalI	GATC	4 cut(s)	732, 1632, 1659, 2022
MboI	GATC	4 cut(s)	730, 1630, 1657, 2020
MboII	GAAGA	7 cut(s)	208, 552, 1207, 1210, 1304, 2017, 2167
MfeI	CAATTG	2 cut(s)	574, 1673
MhlI	GDGCHC	1 cut(s)	1935
MlsI	TGGCCA	2 cut(s)	1667, 1796
MluNI	TGGCCA	2 cut(s)	1667, 1796
MlyI	GAGTC	4 cut(s)	757, 776, 1546, 2366
MmeI	TCCRAC	3 cut(s)	49, 177, 804
Mox20I	TGGCCA	2 cut(s)	1667, 1796
MroI	TCCGGA	1 cut(s)	362
MscI	TGGCCA	2 cut(s)	1667, 1796
MseI	TTAA	7 cut(s)	540, 636, 756, 1059, 1599, 2097, 2145
MslI	CAYNNNNRTG	1 cut(s)	824
Msp20I	TGGCCA	2 cut(s)	1667, 1796
MspA1I	CMGCKG	1 cut(s)	1702
MspI	CCGG	6 cut(s)	111, 297, 318, 363, 899, 2119
MspR9I	CCNGG	3 cut(s)	77, 298, 318
MunI	CAATTG	2 cut(s)	574, 1673
Mva1269I	GAATGC	1 cut(s)	1159
MvaI	CCWGG	1 cut(s)	77
MvnI	CGCG	1 cut(s)	294
MwoI	GCNNNNNNNGC	9 cut(s)	288, 293, 1360, 1396, 1708, 1818, 2024, 2053, 2146
NciI	CCSGG	2 cut(s)	298, 318
NcoI	CCATGG	1 cut(s)	7
NdeI	CATATG	2 cut(s)	701, 1653
NdeII	GATC	4 cut(s)	730, 1630, 1657, 2020
NlaIV	GGNNCC	4 cut(s)	115, 302, 367, 2339
NmuCI	GTSAC	4 cut(s)	617, 1187, 2182, 2287
PaeR7I	CTCGAG	1 cut(s)	1268
PagI	TCATGA	4 cut(s)	333, 892, 1344, 1392
PaqCI	CACCTGC	1 cut(s)	631
PceI	AGGCCT	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	1 cut(s)	1118
PctI	GAATGC	1 cut(s)	1159
PfeI	GAWTC	4 cut(s)	359, 919, 1580, 2264
PkrI	GCNGC	7 cut(s)	49, 52, 293, 1171, 1422, 1555, 2273
PleI	GAGTC	4 cut(s)	756, 776, 1545, 2366
PpsI	GAGTC	4 cut(s)	756, 776, 1545, 2366
Ppu21I	YACGTR	1 cut(s)	1227
PpuMI	RGGWCCY	1 cut(s)	1489
PshBI	ATTAAT	2 cut(s)	1059, 2097
PsiI	TTATAA	3 cut(s)	696, 810, 1020
Psp5II	RGGWCCY	1 cut(s)	1489
Psp6I	CCWGG	1 cut(s)	75
PspFI	CCCAGC	2 cut(s)	1592, 2104
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	4 cut(s)	115, 302, 367, 2339
PspPI	GGNCC	2 cut(s)	225, 1489
PspPPI	RGGWCCY	1 cut(s)	1489
PspXI	VCTCGAGB	1 cut(s)	1268
PsrI	GAACNNNNNNTAC	2 cut(s)	980, 1012
PstNI	CAGNNNCTG	1 cut(s)	863
PvuII	CAGCTG	1 cut(s)	1702
RsaI	GTAC	8 cut(s)	466, 476, 570, 739, 998, 2084, 2339, 2358
RsaNI	GTAC	8 cut(s)	465, 475, 569, 738, 997, 2083, 2338, 2357
RseI	CAYNNNNRTG	1 cut(s)	824
SalI	GTCGAC	1 cut(s)	2223
SaqAI	TTAA	7 cut(s)	540, 636, 756, 1059, 1599, 2097, 2145
SatI	GCNGC	7 cut(s)	48, 51, 292, 1170, 1421, 1554, 2272
Sau3AI	GATC	4 cut(s)	730, 1630, 1657, 2020
Sau96I	GGNCC	2 cut(s)	225, 1489
SchI	GAGTC	4 cut(s)	757, 776, 1546, 2366
ScrFI	CCNGG	3 cut(s)	77, 298, 318
SduI	GDGCHC	1 cut(s)	1935
SfaNI	GCATC	7 cut(s)	844, 892, 1579, 1834, 2224, 2247, 2357
SfcI	CTRYAG	1 cut(s)	1620
Sfr274I	CTCGAG	1 cut(s)	1268
SinI	GGWCC	2 cut(s)	225, 1489
SlaI	CTCGAG	1 cut(s)	1268
SmiMI	CAYNNNNRTG	1 cut(s)	824
SmlI	CTYRAG	3 cut(s)	564, 1268, 1885
SmoI	CTYRAG	3 cut(s)	564, 1268, 1885
SnaBI	TACGTA	1 cut(s)	1227
SpeI	ACTAGT	1 cut(s)	740
SseBI	AGGCCT	1 cut(s)	16
SsiI	CCGC	7 cut(s)	118, 178, 258, 280, 285, 292, 1847
SspI	AATATT	1 cut(s)	1129
SspMI	CTAG	6 cut(s)	548, 741, 1280, 1425, 1716, 2024
StuI	AGGCCT	1 cut(s)	16
StyD4I	CCNGG	3 cut(s)	75, 296, 316
StyI	CCWWGG	2 cut(s)	7, 1797
TaaI	ACNGT	4 cut(s)	865, 1012, 1318, 1503
TaiI	ACGT	5 cut(s)	343, 1118, 1124, 1229, 1533
TatI	WGTACW	2 cut(s)	474, 2082
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	4 cut(s)	359, 919, 1580, 2264
Tru1I	TTAA	7 cut(s)	540, 636, 756, 1059, 1599, 2097, 2145
Tru9I	TTAA	7 cut(s)	540, 636, 756, 1059, 1599, 2097, 2145
TscAI	CASTG	5 cut(s)	1506, 1640, 1846, 1942, 2296
TseFI	GTSAC	4 cut(s)	617, 1187, 2182, 2287
TseI	GCWGC	6 cut(s)	47, 50, 1169, 1420, 1553, 2271
Tsp45I	GTSAC	4 cut(s)	617, 1187, 2182, 2287
TspGWI	ACGGA	1 cut(s)	482
TspRI	CASTG	5 cut(s)	1506, 1640, 1846, 1942, 2296
VpaK11BI	GGWCC	2 cut(s)	225, 1489
VspI	ATTAAT	2 cut(s)	1059, 2097
XagI	CCTNNNNNAGG	1 cut(s)	394
XapI	RAATTY	2 cut(s)	426, 2243
XbaI	TCTAGA	2 cut(s)	547, 1715
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2035
XhoI	CTCGAG	1 cut(s)	1268
XmiI	GTMKAC	3 cut(s)	803, 1619, 2224
XspI	CTAG	6 cut(s)	548, 741, 1280, 1425, 1716, 2024

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.