Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017606.1

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Forward (+)

38675 .. 39883

Gene Structure 1209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017606.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atgagttccatgactacaattcttgtcattgcagtgtgttttgttcaagccttgtatgcaggcctctccatcatctcaatccttgcactaaggcagggcatgagccactacacctttgtggtgtgtcgtatggccattgcaactgccttggcaagtccattggcatggtacctagagagacattctaggcctacaatgaccatcaaggtcatggcaaagatcatgctgctaagcatgtttgaccctgtaatggaccaaaacttatactatgtgggcatgaagaactccaatgccacattcacatcggccatgtgcaacatgcttccggtgtttgcatttgtcatggcctggattttcaggctggagaatgtggactacagacacccgagaggattggccaaggttgtaggaaccttgattactgtggtaggagcaatcctccttaccatggtcaaggggccttcccttaacttgccatgggcaagggaccaggaagcatggtccatagacttggactacaagttgctcgcagctgtatatggggctcttctatcgggggctgcatattatgtcatgggactggttgtgaagaagaagggaccagttttctactcggcctttaaccccttggccactctgcttgtggcgattttggggtcattttttctggcagaacagttgtatactgggagtctcatcggagctgtaaccattatgggaggcctctatcttgttctttggggaaaagcaagagatcagcctccctccgattcaaagaaggccaatgtggaagaaccaactggaaccccagcgcaagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

273

Amino Acids

29.87

Weight (kDa)

9.28

Isoelectric Point (pI)

31.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	168
AccB1I	GGYRCC	1 cut(s)	168
AccI	GTMKAC	1 cut(s)	683
AcoI	YGGCCR	4 cut(s)	132, 306, 396, 630
AfaI	GTAC	1 cut(s)	170
AfiI	CCNNNNNNNGG	2 cut(s)	250, 448
AgsI	TTSAA	2 cut(s)	47, 774
AjnI	CCWGG	2 cut(s)	347, 489
AjuI	GAANNNNNNNTTGG	2 cut(s)	281, 313
AleI	CACNNNNGTG	1 cut(s)	116
AluBI	AGCT	2 cut(s)	533, 704
AluI	AGCT	2 cut(s)	533, 704
Alw26I	GTCTC	2 cut(s)	172, 698
Ama87I	CYCGRG	1 cut(s)	385
ApeKI	GCWGC	3 cut(s)	226, 530, 560
Asp718I	GGTACC	1 cut(s)	168
AspLEI	GCGC	1 cut(s)	814
AspS9I	GGNCC	5 cut(s)	253, 458, 487, 501, 599
AvaI	CYCGRG	1 cut(s)	385
AvaII	GGWCC	4 cut(s)	253, 487, 501, 599
BalI	TGGCCA	3 cut(s)	134, 398, 632
BanI	GGYRCC	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	547
BbvI	GCAGC	3 cut(s)	213, 542, 547
BccI	CCATC	2 cut(s)	77, 209
BciT130I	CCWGG	2 cut(s)	349, 491
BcoDI	GTCTC	2 cut(s)	172, 698
BfaI	CTAG	2 cut(s)	173, 186
BfmI	CTRYAG	1 cut(s)	376
BisI	GCNGC	3 cut(s)	227, 531, 561
BlpI	GCTNAGC	1 cut(s)	230
BlsI	GCNGC	3 cut(s)	228, 532, 562
Bme1390I	CCNGG	2 cut(s)	349, 491
Bme18I	GGWCC	4 cut(s)	253, 487, 501, 599
BmeT110I	CYCGRG	1 cut(s)	385
BmgT120I	GGNCC	5 cut(s)	253, 458, 487, 501, 599
BmiI	GGNNCC	6 cut(s)	170, 412, 459, 488, 600, 805
BmrFI	CCNGG	2 cut(s)	349, 491
BmrI	ACTGGG	1 cut(s)	696
BmuI	ACTGGG	1 cut(s)	696
BplI	GAGNNNNNCTC	2 cut(s)	423, 455
BpmI	CTGGAG	1 cut(s)	383
Bpu1102I	GCTNAGC	1 cut(s)	230
BsaJI	CCNNGG	5 cut(s)	147, 399, 447, 476, 627
BsaWI	WCCGGW	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 448
Bse1I	ACTGG	4 cut(s)	585, 602, 691, 805
Bse3DI	GCAATG	2 cut(s)	27, 135
BseBI	CCWGG	2 cut(s)	349, 491
BseDI	CCNNGG	5 cut(s)	147, 399, 447, 476, 627
BseLI	CCNNNNNNNGG	2 cut(s)	250, 448
BseMI	GCAATG	2 cut(s)	27, 135
BseNI	ACTGG	4 cut(s)	585, 602, 691, 805
BseXI	GCAGC	3 cut(s)	213, 542, 547
BseYI	CCCAGC	1 cut(s)	808
BshNI	GGYRCC	1 cut(s)	168
BsiHKCI	CYCGRG	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	326
BslFI	GGGAC	3 cut(s)	500, 591, 612
BslI	CCNNNNNNNGG	2 cut(s)	250, 448
BsmAI	GTCTC	2 cut(s)	172, 698
BsmFI	GGGAC	3 cut(s)	500, 591, 612
BsoBI	CYCGRG	1 cut(s)	385
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp143I	GATC	2 cut(s)	219, 754
Bsp1720I	GCTNAGC	1 cut(s)	230
Bsp19I	CCATGG	2 cut(s)	447, 476
BspLI	GGNNCC	6 cut(s)	170, 412, 459, 488, 600, 805
BspQI	GCTCTTC	1 cut(s)	552
BspT107I	GGYRCC	1 cut(s)	168
BsrDI	GCAATG	2 cut(s)	27, 135
BsrI	ACTGG	4 cut(s)	585, 602, 691, 805
BssECI	CCNNGG	5 cut(s)	147, 399, 447, 476, 627
BssMI	GATC	2 cut(s)	219, 754
BssNAI	GTATAC	1 cut(s)	684
BssT1I	CCWWGG	5 cut(s)	147, 399, 447, 476, 627
Bst1107I	GTATAC	1 cut(s)	684
Bst2UI	CCWGG	2 cut(s)	349, 491
Bst4CI	ACNGT	2 cut(s)	424, 678
Bst6I	CTCTTC	1 cut(s)	552
BstC8I	GCNNGC	2 cut(s)	61, 528
BstDEI	CTNAG	2 cut(s)	89, 230
BstDSI	CCRYGG	2 cut(s)	447, 476
BstHHI	GCGC	1 cut(s)	814
BstKTI	GATC	2 cut(s)	222, 757
BstMAI	GTCTC	2 cut(s)	172, 698
BstMBI	GATC	2 cut(s)	219, 754
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	2 cut(s)	349, 491
BstNSI	RCATGY	2 cut(s)	238, 322
BstSCI	CCNGG	2 cut(s)	347, 489
BstSFI	CTRYAG	1 cut(s)	376
BstV1I	GCAGC	3 cut(s)	213, 542, 547
BstXI	CCANNNNNNTGG	2 cut(s)	165, 511
BstZ17I	GTATAC	1 cut(s)	684
BtgI	CCRYGG	2 cut(s)	447, 476
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	2 cut(s)	61, 528
CfoI	GCGC	1 cut(s)	814
Cfr13I	GGNCC	5 cut(s)	253, 458, 487, 501, 599
Csp6I	GTAC	1 cut(s)	169
CspCI	CAANNNNNGTGG	2 cut(s)	622, 657
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	2 cut(s)	89, 230
DpnI	GATC	2 cut(s)	221, 756
DpnII	GATC	2 cut(s)	219, 754
EaeI	YGGCCR	4 cut(s)	132, 306, 396, 630
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
Eco130I	CCWWGG	5 cut(s)	147, 399, 447, 476, 627
Eco147I	AGGCCT	3 cut(s)	63, 190, 723
Eco24I	GRGCYC	1 cut(s)	547
Eco47I	GGWCC	4 cut(s)	253, 487, 501, 599
Eco88I	CYCGRG	1 cut(s)	385
EcoO109I	RGGNCCY	1 cut(s)	458
EcoRII	CCWGG	2 cut(s)	347, 489
EcoT14I	CCWWGG	5 cut(s)	147, 399, 447, 476, 627
EcoT38I	GRGCYC	1 cut(s)	547
ErhI	CCWWGG	5 cut(s)	147, 399, 447, 476, 627
FaqI	GGGAC	3 cut(s)	500, 591, 612
FblI	GTMKAC	1 cut(s)	683
Fnu4HI	GCNGC	3 cut(s)	227, 531, 561
FriOI	GRGCYC	1 cut(s)	547
Fsp4HI	GCNGC	3 cut(s)	227, 531, 561
FspBI	CTAG	2 cut(s)	173, 186
GlaI	GCGC	1 cut(s)	813
GluI	GCNGC	3 cut(s)	227, 531, 561
GsaI	CCCAGC	1 cut(s)	812
GsuI	CTGGAG	1 cut(s)	383
HapII	CCGG	1 cut(s)	326
HhaI	GCGC	1 cut(s)	814
Hin6I	GCGC	1 cut(s)	812
HinP1I	GCGC	1 cut(s)	812
HinfI	GANTC	2 cut(s)	691, 770
HpaII	CCGG	1 cut(s)	326
Hpy166II	GTNNAC	2 cut(s)	373, 684
Hpy188I	TCNGA	2 cut(s)	701, 769
Hpy8I	GTNNAC	2 cut(s)	373, 684
HpyAV	CCTTC	3 cut(s)	471, 589, 772
HpyCH4III	ACNGT	2 cut(s)	424, 678
HpyCH4V	TGCA	7 cut(s)	32, 59, 86, 140, 315, 335, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	2 cut(s)	89, 230
HspAI	GCGC	1 cut(s)	812
KpnI	GGTACC	1 cut(s)	172
Kzo9I	GATC	2 cut(s)	219, 754
LguI	GCTCTTC	1 cut(s)	552
LmnI	GCTCC	2 cut(s)	431, 701
Lsp1109I	GCAGC	3 cut(s)	213, 542, 547
MaeI	CTAG	2 cut(s)	173, 186
MaeIII	GTNAC	1 cut(s)	706
MalI	GATC	2 cut(s)	221, 756
MboI	GATC	2 cut(s)	219, 754
MboII	GAAGA	5 cut(s)	292, 539, 601, 604, 803
MhlI	GDGCHC	1 cut(s)	547
MlsI	TGGCCA	3 cut(s)	134, 398, 632
MluCI	AATT	1 cut(s)	18
MluNI	TGGCCA	3 cut(s)	134, 398, 632
MlyI	GAGTC	1 cut(s)	700
MnlI	CCTC	7 cut(s)	74, 383, 449, 713, 734, 771, 775
Mox20I	TGGCCA	3 cut(s)	134, 398, 632
MscI	TGGCCA	3 cut(s)	134, 398, 632
MseI	TTAA	3 cut(s)	468, 621, 820
MslI	CAYNNNNRTG	3 cut(s)	32, 116, 163
Msp20I	TGGCCA	3 cut(s)	134, 398, 632
MspA1I	CMGCKG	1 cut(s)	533
MspI	CCGG	1 cut(s)	326
MspR9I	CCNGG	2 cut(s)	349, 491
MvaI	CCWGG	2 cut(s)	349, 491
MwoI	GCNNNNNNNGC	1 cut(s)	56
NcoI	CCATGG	2 cut(s)	447, 476
NdeII	GATC	2 cut(s)	219, 754
NlaIV	GGNNCC	6 cut(s)	170, 412, 459, 488, 600, 805
NmeAIII	GCCGAG	1 cut(s)	593
NspI	RCATGY	2 cut(s)	238, 322
OliI	CACNNNNGTG	1 cut(s)	116
PceI	AGGCCT	3 cut(s)	63, 190, 723
PciSI	GCTCTTC	1 cut(s)	552
PfeI	GAWTC	1 cut(s)	770
PkrI	GCNGC	3 cut(s)	228, 532, 562
PleI	GAGTC	1 cut(s)	699
PpsI	GAGTC	1 cut(s)	699
Psp6I	CCWGG	2 cut(s)	347, 489
PspFI	CCCAGC	1 cut(s)	808
PspGI	CCWGG	2 cut(s)	347, 489
PspN4I	GGNNCC	6 cut(s)	170, 412, 459, 488, 600, 805
PspPI	GGNCC	5 cut(s)	253, 458, 487, 501, 599
PsrI	GAACNNNNNNTAC	2 cut(s)	403, 435
PvuII	CAGCTG	1 cut(s)	533
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
RseI	CAYNNNNRTG	3 cut(s)	32, 116, 163
SapI	GCTCTTC	1 cut(s)	552
SaqAI	TTAA	3 cut(s)	468, 621, 820
SatI	GCNGC	3 cut(s)	227, 531, 561
Sau3AI	GATC	2 cut(s)	219, 754
Sau96I	GGNCC	5 cut(s)	253, 458, 487, 501, 599
SchI	GAGTC	1 cut(s)	700
ScrFI	CCNGG	2 cut(s)	349, 491
SduI	GDGCHC	1 cut(s)	547
SetI	ASST	7 cut(s)	116, 174, 210, 405, 416, 535, 706
SfcI	CTRYAG	1 cut(s)	376
SinI	GGWCC	4 cut(s)	253, 487, 501, 599
SmiMI	CAYNNNNRTG	3 cut(s)	32, 116, 163
Sse9I	AATT	1 cut(s)	18
SseBI	AGGCCT	3 cut(s)	63, 190, 723
SspMI	CTAG	2 cut(s)	173, 186
StuI	AGGCCT	3 cut(s)	63, 190, 723
StyD4I	CCNGG	2 cut(s)	347, 489
StyI	CCWWGG	5 cut(s)	147, 399, 447, 476, 627
TaaI	ACNGT	2 cut(s)	424, 678
TasI	AATT	1 cut(s)	18
TfiI	GAWTC	1 cut(s)	770
Tru1I	TTAA	3 cut(s)	468, 621, 820
Tru9I	TTAA	3 cut(s)	468, 621, 820
TscAI	CASTG	1 cut(s)	39
TseI	GCWGC	3 cut(s)	226, 530, 560
TspDTI	ATGAA	1 cut(s)	293
TspRI	CASTG	1 cut(s)	39
VpaK11BI	GGWCC	4 cut(s)	253, 487, 501, 599
XceI	RCATGY	2 cut(s)	238, 322
XcmI	CCANNNNNNNNNTGG	2 cut(s)	208, 640
XmiI	GTMKAC	1 cut(s)	683
XspI	CTAG	2 cut(s)	173, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.