Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Forward (+)

17350636 .. 17353445

Gene Structure 2810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g21790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGCCTAAGGAGTCAGTTTCTCAGATGCTCACACAAGCAAAGCCATTTGTGGCTGTGATTTTCTTGCAATTTGGGTTTGCCGGAATGTCCATAATAACAAAGTTTGCTCTAAACCAAGGGATGAGCCAACATGTATTAGTTGTCTATAGGAATGCTGTTGCCTTTGTTTTCATAGCTCCTTTTGCCCTTGTCTTTGATAGGAAATTAAGGCCAAAGATGACCCTTTCAGTCTTTGTGAAGATTCTGTTACTTGGCCTATTAGAACCTGTAATCGACGGGAACTTGTTCTACACGGGGATGAAGCTGACAACAGCAACATTTACAACTGCTATGTGCAATGTTCTTCCTGCCTTTGCATTCATCATGGCTTGGATTTTCAGGCTTGAGATGGTTAATATTAGAAAACTGCACAGCCAGGCAAAGATATTGGGAACCATAGTGACTGTGGGAGGAGCTATGCTTATGACTCTAGTCAATGGACCCATGTTGACTCTTCCATGGACAAGAAGCACTAGCCATCATCAATATACAGGTTCCACAGCTAGCCAAGATCCCATAAAGGGTGCTCTCATGATCACTGCTGGATGTTTCTGCTGGGCTAGTTTCATGATTCTTCAAGCAGTTACTCTAAAAGTGTACCCTGCTGAACTCTCCCTAACAGCTTGGATATGTTTGATGGGTACGTTGGAAGGAACTGTGGCTGCTGTAGCTATCGAATGGCATAACACTGCAGCTTGGGCCATACATTTGGATTATAAGTTGTTACCTGCTGTTTATGGTGGAGTAATATGTTCCGGAGTGGCTTATTATATTCAGGGGATTGTAATGAAGGAAAGAGGACCTGTTTTTGTGACTGCATTCAATCCCCTAAGCATGGTCATTGTAGCCATTTTGAGCTCCATCGCCTTGTCCGAAATACTGTACTTGGGAAGGGTAATGGGAGCAATGGTTATAATAATTGGCCTGTATATGGTTCTCTGGGGTAAAAGTAAGGATCATCATTCACAAACAGATTCAGAAGCAGCTGACGATAAAGTAGCTACAACAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032870 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:0099568 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

351

Amino Acids

38.26

Weight (kDa)

9.13

Isoelectric Point (pI)

31.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	19 - 156	4.3e-09	EamA-like transporter family
EamA	PF00892	187 - 326	2.4e-10	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	756, 953
Acc36I	ACCTGC	1 cut(s)	775
AccIII	TCCGGA	1 cut(s)	794
AclWI	GGATC	2 cut(s)	545, 1002
AfaI	GTAC	3 cut(s)	638, 682, 923
AfiI	CCNNNNNNNGG	3 cut(s)	560, 874, 970
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	2 cut(s)	617, 862
AjnI	CCWGG	1 cut(s)	414
Alw21I	GWGCWC	2 cut(s)	568, 899
AlwI	GGATC	2 cut(s)	545, 1002
Aor13HI	TCCGGA	1 cut(s)	794
AoxI	GGCC	4 cut(s)	209, 253, 738, 961
ApeKI	GCWGC	3 cut(s)	701, 731, 1022
Asp700I	GAANNNNTTC	1 cut(s)	284
AspS9I	GGNCC	3 cut(s)	479, 738, 839
AsuNHI	GCTAGC	1 cut(s)	542
AvaII	GGWCC	2 cut(s)	479, 839
AxyI	CCTNAGG	1 cut(s)	6
BanII	GRGCYC	1 cut(s)	899
Bbv12I	GWGCWC	2 cut(s)	568, 899
BbvI	GCAGC	3 cut(s)	688, 743, 1034
BccI	CCATC	4 cut(s)	382, 525, 670, 908
BciT130I	CCWGG	1 cut(s)	416
BclI	TGATCA	1 cut(s)	573
BfaI	CTAG	4 cut(s)	470, 513, 543, 600
BfmI	CTRYAG	3 cut(s)	145, 705, 729
BfuAI	ACCTGC	1 cut(s)	775
BisI	GCNGC	3 cut(s)	702, 732, 1023
BlsI	GCNGC	3 cut(s)	703, 733, 1024
Bme1390I	CCNGG	1 cut(s)	416
Bme18I	GGWCC	2 cut(s)	479, 839
BmgT120I	GGNCC	3 cut(s)	479, 738, 839
BmiI	GGNNCC	3 cut(s)	433, 481, 535
BmrFI	CCNGG	1 cut(s)	416
BmsI	GCATC	1 cut(s)	15
BmtI	GCTAGC	1 cut(s)	546
BoxI	GACNNNNGTC	1 cut(s)	470
Bpu10I	CCTNAGC	1 cut(s)	869
BpuEI	CTTGAG	1 cut(s)	404
BsaJI	CCNNGG	2 cut(s)	115, 497
BsaWI	WCCGGW	1 cut(s)	794
BsaXI	ACNNNNNCTCC	2 cut(s)	933, 963
Bsc4I	CCNNNNNNNGG	3 cut(s)	560, 874, 970
Bse21I	CCTNAGG	1 cut(s)	6
Bse3DI	GCAATG	2 cut(s)	343, 951
BseAI	TCCGGA	1 cut(s)	794
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	2 cut(s)	115, 497
BseGI	GGATG	3 cut(s)	126, 303, 590
BseLI	CCNNNNNNNGG	3 cut(s)	560, 874, 970
BseMI	GCAATG	2 cut(s)	343, 951
BseMII	CTCAG	1 cut(s)	35
BseRI	GAGGAG	1 cut(s)	465
BseXI	GCAGC	3 cut(s)	688, 743, 1034
BseYI	CCCAGC	1 cut(s)	594
BsgI	GTGCAG	1 cut(s)	392
BshFI	GGCC	4 cut(s)	211, 255, 740, 963
BsiHKAI	GWGCWC	2 cut(s)	568, 899
BsiSI	CCGG	2 cut(s)	81, 795
BslI	CCNNNNNNNGG	3 cut(s)	560, 874, 970
BsmI	GAATGC	3 cut(s)	157, 356, 857
BsnI	GGCC	4 cut(s)	211, 255, 740, 963
Bsp1286I	GDGCHC	2 cut(s)	568, 899
Bsp13I	TCCGGA	1 cut(s)	794
Bsp143I	GATC	3 cut(s)	550, 573, 994
Bsp19I	CCATGG	1 cut(s)	497
BspANI	GGCC	4 cut(s)	211, 255, 740, 963
BspCNI	CTCAG	1 cut(s)	34
BspEI	TCCGGA	1 cut(s)	794
BspHI	TCATGA	2 cut(s)	570, 606
BspLI	GGNNCC	3 cut(s)	433, 481, 535
BspMAI	CTGCAG	1 cut(s)	733
BspMI	ACCTGC	1 cut(s)	775
BspOI	GCTAGC	1 cut(s)	546
BspPI	GGATC	2 cut(s)	545, 1002
BsrDI	GCAATG	2 cut(s)	343, 951
BssECI	CCNNGG	2 cut(s)	115, 497
BssMI	GATC	3 cut(s)	550, 573, 994
BssT1I	CCWWGG	2 cut(s)	115, 497
Bst2UI	CCWGG	1 cut(s)	416
Bst4CI	ACNGT	4 cut(s)	445, 697, 921, 1048
Bst6I	CTCTTC	1 cut(s)	498
BstC8I	GCNNGC	1 cut(s)	544
BstDEI	CTNAG	3 cut(s)	6, 21, 869
BstDSI	CCRYGG	1 cut(s)	497
BstF5I	GGATG	3 cut(s)	126, 303, 590
BstKTI	GATC	3 cut(s)	553, 576, 997
BstMBI	GATC	3 cut(s)	550, 573, 994
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 707, 737
BstNI	CCWGG	1 cut(s)	416
BstNSI	RCATGY	1 cut(s)	134
BstPAI	GACNNNNGTC	1 cut(s)	470
BstSCI	CCNGG	1 cut(s)	414
BstSFI	CTRYAG	3 cut(s)	145, 705, 729
BstV1I	GCAGC	3 cut(s)	688, 743, 1034
BstX2I	RGATCY	1 cut(s)	550
BstXI	CCANNNNNNTGG	1 cut(s)	748
BstYI	RGATCY	1 cut(s)	550
Bsu36I	CCTNAGG	1 cut(s)	6
BsuRI	GGCC	4 cut(s)	211, 255, 740, 963
BtgI	CCRYGG	1 cut(s)	497
BtgZI	GCGATG	1 cut(s)	886
BtsCI	GGATG	3 cut(s)	126, 303, 590
BtsI	GCAGTG	2 cut(s)	576, 726
BtsIMutI	CAGTG	2 cut(s)	576, 726
BveI	ACCTGC	1 cut(s)	775
Cac8I	GCNNGC	1 cut(s)	544
CciI	TCATGA	2 cut(s)	570, 606
Cfr13I	GGNCC	3 cut(s)	479, 738, 839
Csp6I	GTAC	3 cut(s)	637, 681, 922
CviAII	CATG	7 cut(s)	131, 364, 484, 498, 571, 607, 874
CviQI	GTAC	3 cut(s)	637, 681, 922
DdeI	CTNAG	3 cut(s)	6, 21, 869
DpnI	GATC	3 cut(s)	552, 575, 996
DpnII	GATC	3 cut(s)	550, 573, 994
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
Ecl136II	GAGCTC	1 cut(s)	897
Eco130I	CCWWGG	2 cut(s)	115, 497
Eco24I	GRGCYC	1 cut(s)	899
Eco47I	GGWCC	2 cut(s)	479, 839
Eco53kI	GAGCTC	1 cut(s)	897
Eco81I	CCTNAGG	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	897
EcoO109I	RGGNCCY	1 cut(s)	839
EcoRII	CCWGG	1 cut(s)	414
EcoT14I	CCWWGG	2 cut(s)	115, 497
EcoT38I	GRGCYC	1 cut(s)	899
ErhI	CCWWGG	2 cut(s)	115, 497
FaeI	CATG	7 cut(s)	134, 367, 487, 501, 574, 610, 877
FatI	CATG	7 cut(s)	130, 363, 483, 497, 570, 606, 873
FbaI	TGATCA	1 cut(s)	573
Fnu4HI	GCNGC	3 cut(s)	702, 732, 1023
FokI	GGATG	3 cut(s)	133, 310, 597
FriOI	GRGCYC	1 cut(s)	899
Fsp4HI	GCNGC	3 cut(s)	702, 732, 1023
FspBI	CTAG	4 cut(s)	470, 513, 543, 600
GluI	GCNGC	3 cut(s)	702, 732, 1023
GsaI	CCCAGC	1 cut(s)	598
HaeIII	GGCC	4 cut(s)	211, 255, 740, 963
HapII	CCGG	2 cut(s)	81, 795
Hin1II	CATG	7 cut(s)	134, 367, 487, 501, 574, 610, 877
HincII	GTYRAC	1 cut(s)	489
HindII	GTYRAC	1 cut(s)	489
HinfI	GANTC	6 cut(s)	11, 241, 466, 490, 610, 1013
HpaII	CCGG	2 cut(s)	81, 795
Hpy166II	GTNNAC	2 cut(s)	489, 637
Hpy188I	TCNGA	3 cut(s)	24, 913, 1018
Hpy188III	TCNNGA	3 cut(s)	571, 607, 795
Hpy8I	GTNNAC	2 cut(s)	489, 637
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	3 cut(s)	683, 823, 924
HpyCH4III	ACNGT	4 cut(s)	445, 697, 921, 1048
HpyCH4IV	ACGT	1 cut(s)	683
HpyCH4V	TGCA	6 cut(s)	67, 336, 356, 409, 731, 857
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 707, 737
HpyF3I	CTNAG	3 cut(s)	6, 21, 869
HpySE526I	ACGT	1 cut(s)	683
Hsp92II	CATG	7 cut(s)	134, 367, 487, 501, 574, 610, 877
Kpn2I	TCCGGA	1 cut(s)	794
Ksp22I	TGATCA	1 cut(s)	573
Kzo9I	GATC	3 cut(s)	550, 573, 994
LmnI	GCTCC	4 cut(s)	181, 452, 902, 941
Lsp1109I	GCAGC	3 cut(s)	688, 743, 1034
LweI	GCATC	1 cut(s)	15
MaeI	CTAG	4 cut(s)	470, 513, 543, 600
MaeII	ACGT	1 cut(s)	683
MaeIII	GTNAC	5 cut(s)	246, 439, 622, 762, 850
MalI	GATC	3 cut(s)	552, 575, 996
MboI	GATC	3 cut(s)	550, 573, 994
MboII	GAAGA	4 cut(s)	250, 335, 485, 605
MflI	RGATCY	1 cut(s)	550
MhlI	GDGCHC	2 cut(s)	568, 899
MluCI	AATT	3 cut(s)	68, 203, 957
MlyI	GAGTC	3 cut(s)	20, 460, 484
MmeI	TCCRAC	1 cut(s)	666
MnlI	CCTC	2 cut(s)	443, 830
MroI	TCCGGA	1 cut(s)	794
MroXI	GAANNNNTTC	1 cut(s)	284
MseI	TTAA	3 cut(s)	206, 393, 1051
MslI	CAYNNNNRTG	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	1025
MspI	CCGG	2 cut(s)	81, 795
MspR9I	CCNGG	1 cut(s)	416
Mva1269I	GAATGC	3 cut(s)	157, 356, 857
MvaI	CCWGG	1 cut(s)	416
MwoI	GCNNNNNNNGC	3 cut(s)	182, 707, 737
NcoI	CCATGG	1 cut(s)	497
NdeII	GATC	3 cut(s)	550, 573, 994
NheI	GCTAGC	1 cut(s)	542
NlaIII	CATG	7 cut(s)	134, 367, 487, 501, 574, 610, 877
NlaIV	GGNNCC	3 cut(s)	433, 481, 535
NmuCI	GTSAC	2 cut(s)	439, 850
NspI	RCATGY	1 cut(s)	134
PagI	TCATGA	2 cut(s)	570, 606
PciI	ACATGT	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	909
PctI	GAATGC	3 cut(s)	157, 356, 857
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	3 cut(s)	241, 610, 1013
PkrI	GCNGC	3 cut(s)	703, 733, 1024
PleI	GAGTC	3 cut(s)	19, 460, 484
PpsI	GAGTC	3 cut(s)	19, 460, 484
PpuMI	RGGWCCY	1 cut(s)	839
PscI	ACATGT	1 cut(s)	130
PshAI	GACNNNNGTC	1 cut(s)	470
PsiI	TTATAA	2 cut(s)	756, 953
Psp124BI	GAGCTC	1 cut(s)	899
Psp5II	RGGWCCY	1 cut(s)	839
Psp6I	CCWGG	1 cut(s)	414
PspFI	CCCAGC	1 cut(s)	594
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	3 cut(s)	433, 481, 535
PspPI	GGNCC	3 cut(s)	479, 738, 839
PspPPI	RGGWCCY	1 cut(s)	839
PsrI	GAACNNNNNNTAC	2 cut(s)	272, 304
PstI	CTGCAG	1 cut(s)	733
PsuI	RGATCY	1 cut(s)	550
PvuII	CAGCTG	1 cut(s)	1025
RsaI	GTAC	3 cut(s)	638, 682, 923
RsaNI	GTAC	3 cut(s)	637, 681, 922
RseI	CAYNNNNRTG	1 cut(s)	296
SacI	GAGCTC	1 cut(s)	899
SaqAI	TTAA	3 cut(s)	206, 393, 1051
SatI	GCNGC	3 cut(s)	702, 732, 1023
Sau3AI	GATC	3 cut(s)	550, 573, 994
Sau96I	GGNCC	3 cut(s)	479, 738, 839
SchI	GAGTC	3 cut(s)	20, 460, 484
ScrFI	CCNGG	1 cut(s)	416
SduI	GDGCHC	2 cut(s)	568, 899
SfaNI	GCATC	1 cut(s)	15
SfcI	CTRYAG	3 cut(s)	145, 705, 729
SinI	GGWCC	2 cut(s)	479, 839
SmiMI	CAYNNNNRTG	1 cut(s)	296
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	3 cut(s)	68, 203, 957
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	4 cut(s)	470, 513, 543, 600
SstI	GAGCTC	1 cut(s)	899
StyD4I	CCNGG	1 cut(s)	414
StyI	CCWWGG	2 cut(s)	115, 497
TaaI	ACNGT	4 cut(s)	445, 697, 921, 1048
TaiI	ACGT	1 cut(s)	686
TaqI	TCGA	2 cut(s)	273, 714
TasI	AATT	3 cut(s)	68, 203, 957
TatI	WGTACW	1 cut(s)	921
TfiI	GAWTC	3 cut(s)	241, 610, 1013
Tru1I	TTAA	3 cut(s)	206, 393, 1051
Tru9I	TTAA	3 cut(s)	206, 393, 1051
TscAI	CASTG	2 cut(s)	583, 733
TseFI	GTSAC	2 cut(s)	439, 850
TseI	GCWGC	3 cut(s)	701, 731, 1022
Tsp45I	GTSAC	2 cut(s)	439, 850
TspDTI	ATGAA	5 cut(s)	160, 314, 349, 595, 842
TspRI	CASTG	2 cut(s)	583, 733
VpaK11BI	GGWCC	2 cut(s)	479, 839
XceI	RCATGY	1 cut(s)	134
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	4 cut(s)	470, 513, 543, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.