Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Reverse (-)

56974420 .. 56975143

Gene Structure 724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG335500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGTGGAAGGAGCAGTGGTGGCTGTTGTGGTTGAAAGGGGGAATTTGGAAGCATGGTCCATACACTTGGACTTGAAGTTGCTCGCAGCTGTTTATGGGGCTCTTGTATCGGGGGCTGCATATTATGTCATGGGACTGGTTGTGAAGAAGAAGGGACCAGTTTTCTACTCGGCCTTTAACCCCTTGGCCACTCTACTTGTGGCGATTTTGGGCTCATTTTTTCTGCATGAACAATTGTATACTGGGAGTCTCATCGGAGCTGTAACCATTGTGGGAGGCCTCTATCTTGTTCTTTGGGGAAAAGCAAGAGATCAGCCTCCCTCCGATTCAAAGAATGCCAATGTGGAAGAACCAACTGGAACCCCAGCAATAGACGATCGTGAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032870 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:0099568 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

129

Amino Acids

13.7

Weight (kDa)

5.23

Isoelectric Point (pI)

18.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	18 - 98	1.7e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	239
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	43
AgsI	TTSAA	3 cut(s)	35, 76, 330
AluBI	AGCT	2 cut(s)	89, 260
AluI	AGCT	2 cut(s)	89, 260
Alw26I	GTCTC	1 cut(s)	254
AoxI	GGCC	3 cut(s)	171, 186, 277
ApeKI	GCWGC	2 cut(s)	86, 116
ApoI	RAATTY	1 cut(s)	43
AspS9I	GGNCC	2 cut(s)	57, 155
AvaII	GGWCC	2 cut(s)	57, 155
BalI	TGGCCA	1 cut(s)	188
BanII	GRGCYC	2 cut(s)	103, 215
BbvI	GCAGC	2 cut(s)	98, 103
BcoDI	GTCTC	1 cut(s)	254
BisI	GCNGC	2 cut(s)	87, 117
BlsI	GCNGC	2 cut(s)	88, 118
Bme18I	GGWCC	2 cut(s)	57, 155
BmgT120I	GGNCC	2 cut(s)	57, 155
BmiI	GGNNCC	2 cut(s)	156, 361
BmrI	ACTGGG	1 cut(s)	252
BmuI	ACTGGG	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	183
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bse1I	ACTGG	4 cut(s)	141, 158, 247, 361
BseDI	CCNNGG	1 cut(s)	183
BseNI	ACTGG	4 cut(s)	141, 158, 247, 361
BseXI	GCAGC	2 cut(s)	98, 103
BseYI	CCCAGC	1 cut(s)	364
Bsh1285I	CGRYCG	1 cut(s)	379
BshFI	GGCC	3 cut(s)	173, 188, 279
BsiEI	CGRYCG	1 cut(s)	379
BslFI	GGGAC	2 cut(s)	147, 168
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	2 cut(s)	147, 168
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	3 cut(s)	173, 188, 279
Bsp1286I	GDGCHC	2 cut(s)	103, 215
Bsp143I	GATC	2 cut(s)	310, 376
BspANI	GGCC	3 cut(s)	173, 188, 279
BspLI	GGNNCC	2 cut(s)	156, 361
BsrI	ACTGG	4 cut(s)	141, 158, 247, 361
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	2 cut(s)	310, 376
BssNAI	GTATAC	1 cut(s)	240
BssT1I	CCWWGG	1 cut(s)	183
Bst1107I	GTATAC	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	84
BstKTI	GATC	2 cut(s)	313, 379
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	2 cut(s)	310, 376
BstMCI	CGRYCG	1 cut(s)	379
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstV1I	GCAGC	2 cut(s)	98, 103
BstXI	CCANNNNNNTGG	1 cut(s)	67
BstZ17I	GTATAC	1 cut(s)	240
BsuRI	GGCC	3 cut(s)	173, 188, 279
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	21
Cac8I	GCNNGC	1 cut(s)	84
Cfr13I	GGNCC	2 cut(s)	57, 155
CspCI	CAANNNNNGTGG	2 cut(s)	178, 213
CviAII	CATG	3 cut(s)	54, 130, 227
DpnI	GATC	2 cut(s)	312, 378
DpnII	GATC	2 cut(s)	310, 376
EaeI	YGGCCR	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	183
Eco147I	AGGCCT	1 cut(s)	279
Eco24I	GRGCYC	2 cut(s)	103, 215
Eco47I	GGWCC	2 cut(s)	57, 155
EcoT14I	CCWWGG	1 cut(s)	183
EcoT38I	GRGCYC	2 cut(s)	103, 215
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	3 cut(s)	57, 133, 230
FaiI	YATR	8 cut(s)	55, 62, 96, 121, 126, 131, 228, 240
FaqI	GGGAC	2 cut(s)	147, 168
FatI	CATG	3 cut(s)	53, 129, 226
FblI	GTMKAC	1 cut(s)	239
Fnu4HI	GCNGC	2 cut(s)	87, 117
FriOI	GRGCYC	2 cut(s)	103, 215
Fsp4HI	GCNGC	2 cut(s)	87, 117
GluI	GCNGC	2 cut(s)	87, 117
GsaI	CCCAGC	1 cut(s)	368
HaeIII	GGCC	3 cut(s)	173, 188, 279
Hin1II	CATG	3 cut(s)	57, 133, 230
HinfI	GANTC	2 cut(s)	247, 326
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188I	TCNGA	2 cut(s)	257, 325
Hpy188III	TCNNGA	1 cut(s)	380
Hpy8I	GTNNAC	1 cut(s)	240
HpyAV	CCTTC	1 cut(s)	145
HpyCH4V	TGCA	2 cut(s)	119, 226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
Hsp92II	CATG	3 cut(s)	57, 133, 230
Kzo9I	GATC	2 cut(s)	310, 376
LmnI	GCTCC	2 cut(s)	11, 257
LpnPI	CCDG	5 cut(s)	122, 171, 228, 342, 378
Lsp1109I	GCAGC	2 cut(s)	98, 103
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	2 cut(s)	312, 378
MboI	GATC	2 cut(s)	310, 376
MboII	GAAGA	3 cut(s)	157, 160, 359
MfeI	CAATTG	1 cut(s)	233
MhlI	GDGCHC	2 cut(s)	103, 215
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	2 cut(s)	43, 233
MluNI	TGGCCA	1 cut(s)	188
MlyI	GAGTC	1 cut(s)	256
MnlI	CCTC	4 cut(s)	269, 290, 327, 331
Mox20I	TGGCCA	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	2 cut(s)	177, 388
Msp20I	TGGCCA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	89
MunI	CAATTG	1 cut(s)	233
Mva1269I	GAATGC	1 cut(s)	340
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeII	GATC	2 cut(s)	310, 376
NlaIII	CATG	3 cut(s)	57, 133, 230
NlaIV	GGNNCC	2 cut(s)	156, 361
NmeAIII	GCCGAG	1 cut(s)	149
PceI	AGGCCT	1 cut(s)	279
PctI	GAATGC	1 cut(s)	340
PfeI	GAWTC	1 cut(s)	326
PkrI	GCNGC	2 cut(s)	88, 118
Ple19I	CGATCG	1 cut(s)	379
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
PspFI	CCCAGC	1 cut(s)	364
PspN4I	GGNNCC	2 cut(s)	156, 361
PspPI	GGNCC	2 cut(s)	57, 155
PvuI	CGATCG	1 cut(s)	379
PvuII	CAGCTG	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	177, 388
SatI	GCNGC	2 cut(s)	87, 117
Sau3AI	GATC	2 cut(s)	310, 376
Sau96I	GGNCC	2 cut(s)	57, 155
SchI	GAGTC	1 cut(s)	256
SduI	GDGCHC	2 cut(s)	103, 215
SetI	ASST	2 cut(s)	91, 262
SinI	GGWCC	2 cut(s)	57, 155
Sse9I	AATT	2 cut(s)	43, 233
SseBI	AGGCCT	1 cut(s)	279
StuI	AGGCCT	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	183
TasI	AATT	2 cut(s)	43, 233
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	2 cut(s)	177, 388
Tru9I	TTAA	2 cut(s)	177, 388
TscAI	CASTG	1 cut(s)	21
TseI	GCWGC	2 cut(s)	86, 116
TspDTI	ATGAA	1 cut(s)	243
TspRI	CASTG	1 cut(s)	21
VpaK11BI	GGWCC	2 cut(s)	57, 155
XapI	RAATTY	1 cut(s)	43
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.