Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Forward (+)

23623712 .. 23625076

Gene Structure 1365 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1123000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTTTAGTGAGTCTTTGGTTAACCTAATCTGTCGGGCAAAGCTACTCATAGCTGTGATTCTCTTGCAGTGTGGCTATGCAGGTCAGAATGTAATTGCTAGTCCTGCTCTAAACCAGGGAATGAGCCATTATGTGTTCTTAGTCTATAGAATGGCTATTGCAACTGTTCTCATTTCTCCTTTTGCTCTTATTTTGGATAGGCTTGAGAAAGTGAACATTAGGAAACTTCATAGCCAAGCAAAGGTAGTGGGGACTATAGTCATAGTTGAGGGAGCTATTATATTGACTCTGGTGAAGGGACCGAAACTTAATTTTCCATGGACAAAGGGCAAACGTCTAAACTATGTTCATCACCAATTGCGAAGTGATTCAAACCATAAAGACCTCATTAAGAGTGCCCTCGTGACTGCAGCATCTTGTTTCTTCTGGTTTTGTTTCATCATTTTGCAAGCAATACTCTCTGGGGATAATTATTATATCATGGGAGCGGTAAACAAAGAAAAGGGACGTATTTACCATTCTTCTTTTAACCCCTTAGGCACAGTAACTACTGCAATTATGGGTTCCCTTGTTTTAGCTGAGCAGATGTATTTCAAAATGAGACCCATAAATTTCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

207

Amino Acids

23.08

Weight (kDa)

9.83

Isoelectric Point (pI)

37.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	71
AccBSI	CCGCTC	1 cut(s)	488
AciI	CCGC	1 cut(s)	488
AcsI	RAATTY	1 cut(s)	610
AfiI	CCNNNNNNNGG	1 cut(s)	241
AgsI	TTSAA	2 cut(s)	372, 595
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	4 cut(s)	43, 53, 275, 578
AluI	AGCT	4 cut(s)	43, 53, 275, 578
Alw26I	GTCTC	1 cut(s)	595
ApeKI	GCWGC	1 cut(s)	410
ApoI	RAATTY	1 cut(s)	610
Asp700I	GAANNNNTTC	1 cut(s)	367
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	2 cut(s)	304, 344
AvaII	GGWCC	1 cut(s)	299
AxyI	CCTNAGG	1 cut(s)	535
BaeGI	GKGCMC	1 cut(s)	400
BauI	CACGAG	1 cut(s)	401
BbvI	GCAGC	1 cut(s)	422
BciT130I	CCWGG	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	595
BfaI	CTAG	1 cut(s)	99
BfmI	CTRYAG	3 cut(s)	145, 255, 408
BfuAI	ACCTGC	1 cut(s)	71
BisI	GCNGC	1 cut(s)	411
BlpI	GCTNAGC	1 cut(s)	579
BlsI	GCNGC	1 cut(s)	412
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	2 cut(s)	300, 565
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	1 cut(s)	422
BoxI	GACNNNNGTC	1 cut(s)	257
Bpu1102I	GCTNAGC	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	224
BsaI	GGTCTC	1 cut(s)	595
BsaJI	CCNNGG	2 cut(s)	115, 317
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse21I	CCTNAGG	1 cut(s)	535
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	115, 317
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMII	CTCAG	1 cut(s)	570
BseSI	GKGCMC	1 cut(s)	400
BseXI	GCAGC	1 cut(s)	422
BslFI	GGGAC	3 cut(s)	265, 312, 519
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmAI	GTCTC	1 cut(s)	595
BsmFI	GGGAC	3 cut(s)	265, 312, 519
Bso31I	GGTCTC	1 cut(s)	595
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp1720I	GCTNAGC	1 cut(s)	579
Bsp19I	CCATGG	1 cut(s)	317
BspACI	CCGC	1 cut(s)	488
BspCNI	CTCAG	1 cut(s)	571
BspLI	GGNNCC	2 cut(s)	300, 565
BspMAI	CTGCAG	1 cut(s)	412
BspMI	ACCTGC	1 cut(s)	71
BspTNI	GGTCTC	1 cut(s)	595
BsrBI	CCGCTC	1 cut(s)	488
BssECI	CCNNGG	2 cut(s)	115, 317
BssSI	CACGAG	1 cut(s)	401
BssT1I	CCWWGG	1 cut(s)	317
Bst2BI	CACGAG	1 cut(s)	401
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	2 cut(s)	166, 544
BstC8I	GCNNGC	1 cut(s)	450
BstDEI	CTNAG	3 cut(s)	139, 535, 579
BstDSI	CCRYGG	1 cut(s)	317
BstMAI	GTCTC	1 cut(s)	595
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNI	CCWGG	1 cut(s)	116
BstPAI	GACNNNNGTC	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	3 cut(s)	145, 255, 408
BstSLI	GKGCMC	1 cut(s)	400
BstV1I	GCAGC	1 cut(s)	422
Bsu36I	CCTNAGG	1 cut(s)	535
BtgI	CCRYGG	1 cut(s)	317
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	1 cut(s)	74
BveI	ACCTGC	1 cut(s)	71
Cac8I	GCNNGC	1 cut(s)	450
Cfr13I	GGNCC	1 cut(s)	299
CspCI	CAANNNNNGTGG	2 cut(s)	228, 263
CviAII	CATG	2 cut(s)	318, 481
CviJI	RGCY	9 cut(s)	43, 53, 75, 126, 155, 202, 234, 275, 578
CviKI_1	RGCY	9 cut(s)	43, 53, 75, 126, 155, 202, 234, 275, 578
DdeI	CTNAG	3 cut(s)	139, 535, 579
Eco130I	CCWWGG	1 cut(s)	317
Eco31I	GGTCTC	1 cut(s)	595
Eco47I	GGWCC	1 cut(s)	299
Eco81I	CCTNAGG	1 cut(s)	535
EcoRII	CCWGG	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	317
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	2 cut(s)	321, 484
FaqI	GGGAC	3 cut(s)	265, 312, 519
FatI	CATG	2 cut(s)	317, 480
Fnu4HI	GCNGC	1 cut(s)	411
Fsp4HI	GCNGC	1 cut(s)	411
FspBI	CTAG	1 cut(s)	99
GluI	GCNGC	1 cut(s)	411
Hin1II	CATG	2 cut(s)	321, 484
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HinfI	GANTC	4 cut(s)	11, 58, 286, 368
HpaI	GTTAAC	1 cut(s)	22
HphI	GGTGA	2 cut(s)	304, 344
Hpy166II	GTNNAC	3 cut(s)	22, 214, 493
Hpy188I	TCNGA	2 cut(s)	87, 617
Hpy188III	TCNNGA	1 cut(s)	403
Hpy8I	GTNNAC	3 cut(s)	22, 214, 493
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	2 cut(s)	166, 544
HpyCH4IV	ACGT	2 cut(s)	334, 508
HpyCH4V	TGCA	6 cut(s)	67, 80, 161, 410, 448, 554
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	3 cut(s)	139, 535, 579
HpySE526I	ACGT	2 cut(s)	334, 508
Hsp92II	CATG	2 cut(s)	321, 484
KspAI	GTTAAC	1 cut(s)	22
LmnI	GCTCC	2 cut(s)	272, 485
LpnPI	CCDG	7 cut(s)	66, 101, 117, 128, 275, 412, 447
Lsp1109I	GCAGC	1 cut(s)	422
LweI	GCATC	1 cut(s)	422
MaeI	CTAG	1 cut(s)	99
MaeII	ACGT	2 cut(s)	334, 508
MaeIII	GTNAC	2 cut(s)	403, 544
MbiI	CCGCTC	1 cut(s)	488
MboII	GAAGA	2 cut(s)	415, 513
MfeI	CAATTG	1 cut(s)	356
MhlI	GDGCHC	1 cut(s)	400
MluCI	AATT	6 cut(s)	93, 310, 356, 469, 555, 610
MlyI	GAGTC	2 cut(s)	20, 280
MnlI	CCTC	3 cut(s)	262, 395, 410
MroXI	GAANNNNTTC	1 cut(s)	367
MseI	TTAA	4 cut(s)	21, 309, 390, 528
MslI	CAYNNNNRTG	1 cut(s)	53
MspR9I	CCNGG	1 cut(s)	116
MunI	CAATTG	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	104
NcoI	CCATGG	1 cut(s)	317
NlaIII	CATG	2 cut(s)	321, 484
NlaIV	GGNNCC	2 cut(s)	300, 565
NmuCI	GTSAC	1 cut(s)	403
PdmI	GAANNNNTTC	1 cut(s)	367
PfeI	GAWTC	2 cut(s)	58, 368
PkrI	GCNGC	1 cut(s)	412
PleI	GAGTC	2 cut(s)	19, 280
PpsI	GAGTC	2 cut(s)	19, 280
PshAI	GACNNNNGTC	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	2 cut(s)	300, 565
PspPI	GGNCC	1 cut(s)	299
PstI	CTGCAG	1 cut(s)	412
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	4 cut(s)	21, 309, 390, 528
SatI	GCNGC	1 cut(s)	411
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	2 cut(s)	20, 280
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	400
SfaNI	GCATC	1 cut(s)	422
SfcI	CTRYAG	3 cut(s)	145, 255, 408
SinI	GGWCC	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	6 cut(s)	93, 310, 356, 469, 555, 610
SsiI	CCGC	1 cut(s)	488
SspMI	CTAG	1 cut(s)	99
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	2 cut(s)	166, 544
TaiI	ACGT	2 cut(s)	337, 511
TaqII	GACCGA	1 cut(s)	316
TasI	AATT	6 cut(s)	93, 310, 356, 469, 555, 610
TfiI	GAWTC	2 cut(s)	58, 368
Tru1I	TTAA	4 cut(s)	21, 309, 390, 528
Tru9I	TTAA	4 cut(s)	21, 309, 390, 528
TscAI	CASTG	1 cut(s)	74
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	1 cut(s)	410
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	3 cut(s)	218, 338, 427
TspRI	CASTG	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	299
XapI	RAATTY	1 cut(s)	610
XmnI	GAANNNNTTC	1 cut(s)	367
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.