Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Forward (+)

20725566 .. 20727203

Gene Structure 1638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG122400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAGTTCCATGACTACAATTCTTGTCATTTCAGTGTGTTTTGTTCAAGCCTTGTATGCAGGCCTCTCCATCATCTCAATCCTTGCACTAAGGCAGGGCATGAGCCACTACACCTTTGTGGTGTATCGTATGGCCATTGCAACTGCCTTGGCAAGTCCATTGGCATGGTACCTAGAGAGACATTCTAGGCCTACAATGACCATCAAGGTCATGGCAAAGATCATGCTGCTAAGCATGTTTGACCCTGTAATGGACCAAAACTTATACTATGTGGGCATGAAGAACTCCAATGCCACATTCACATCGGCCATGTGCAACATGCTTCCGGTGTTTGCATTTGTCATGGCCTGGATTTTCAGGCTGGAGAATGTGGACTACAGACACCCGAGAGGATTGGCCAAGATTGTAGGAACCTTGGTTACTGTGGTAGGAGCAATCCTCCTTACCATGGTCAAGGGGCCTTCCCTCAACTTGCCATGGGCAAGGGACCACAAGAAAAATCATTCTTCACAGCCCGAAGTCAAGGGTGCTTTCTTCCTAACACTAGCCTGCTTCTGCTGGTCCTGTTTCATGATCCTACAAGCCAATGTACTCAAGTCCTACCCCTGCAAGCTCTCTCTCACCGCTTTGATTTGCTTCTGGGGTATGGTGGAAGGAGCAGTGGTGGCTGTTGTGGTTGAAAGGGGGAACTCGGAAGCATGGTCCATACACTTGGACTACAAGTTGCTCGCAGCTGTATATGGGGTGAAGAAAATTTTTAATGGTCTTTTACTTCTAATGCTACACTTTATAAGTTTTTATATGAGTTTGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

271

Amino Acids

30.37

Weight (kDa)

9.41

Isoelectric Point (pI)

33.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	10 - 149	3.7e-12	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	791
Acc65I	GGTACC	1 cut(s)	168
AccB1I	GGYRCC	1 cut(s)	168
AciI	CCGC	1 cut(s)	624
AclWI	GGATC	1 cut(s)	568
AcoI	YGGCCR	3 cut(s)	132, 306, 396
AcsI	RAATTY	1 cut(s)	753
AfaI	GTAC	2 cut(s)	170, 591
AfiI	CCNNNNNNNGG	2 cut(s)	250, 448
AgsI	TTSAA	2 cut(s)	47, 680
AjnI	CCWGG	1 cut(s)	347
AjuI	GAANNNNNNNTTGG	2 cut(s)	281, 313
AleI	CACNNNNGTG	1 cut(s)	116
AluBI	AGCT	2 cut(s)	613, 734
AluI	AGCT	2 cut(s)	613, 734
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	1 cut(s)	568
Ama87I	CYCGRG	1 cut(s)	385
AoxI	GGCC	7 cut(s)	61, 132, 188, 306, 345, 396, 458
ApeKI	GCWGC	2 cut(s)	226, 731
ApoI	RAATTY	1 cut(s)	753
Asp718I	GGTACC	1 cut(s)	168
AspS9I	GGNCC	5 cut(s)	253, 458, 487, 561, 702
AsuHPI	GGTGA	2 cut(s)	613, 757
AvaI	CYCGRG	1 cut(s)	385
AvaII	GGWCC	4 cut(s)	253, 487, 561, 702
BalI	TGGCCA	2 cut(s)	134, 398
BanI	GGYRCC	1 cut(s)	168
BbvI	GCAGC	2 cut(s)	213, 743
BccI	CCATC	2 cut(s)	77, 209
BciT130I	CCWGG	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	3 cut(s)	173, 186, 545
BfmI	CTRYAG	1 cut(s)	376
BisI	GCNGC	2 cut(s)	227, 732
BlpI	GCTNAGC	1 cut(s)	230
BlsI	GCNGC	2 cut(s)	228, 733
Bme1390I	CCNGG	1 cut(s)	349
Bme18I	GGWCC	4 cut(s)	253, 487, 561, 702
BmeT110I	CYCGRG	1 cut(s)	385
BmgT120I	GGNCC	5 cut(s)	253, 458, 487, 561, 702
BmiI	GGNNCC	4 cut(s)	170, 412, 459, 488
BmrFI	CCNGG	1 cut(s)	349
BplI	GAGNNNNNCTC	2 cut(s)	423, 455
BpmI	CTGGAG	1 cut(s)	383
Bpu1102I	GCTNAGC	1 cut(s)	230
BpuEI	CTTGAG	1 cut(s)	578
BsaJI	CCNNGG	4 cut(s)	147, 414, 447, 476
BsaWI	WCCGGW	1 cut(s)	325
BsaXI	ACNNNNNCTCC	2 cut(s)	648, 678
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 448
Bse3DI	GCAATG	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	349
BseDI	CCNNGG	4 cut(s)	147, 414, 447, 476
BseLI	CCNNNNNNNGG	2 cut(s)	250, 448
BseMI	GCAATG	1 cut(s)	135
BseXI	GCAGC	2 cut(s)	213, 743
BshFI	GGCC	7 cut(s)	63, 134, 190, 308, 347, 398, 460
BshNI	GGYRCC	1 cut(s)	168
BsiHKCI	CYCGRG	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	326
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	2 cut(s)	250, 448
BsmAI	GTCTC	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	500
BsnI	GGCC	7 cut(s)	63, 134, 190, 308, 347, 398, 460
BsoBI	CYCGRG	1 cut(s)	385
Bsp143I	GATC	2 cut(s)	219, 573
Bsp1720I	GCTNAGC	1 cut(s)	230
Bsp19I	CCATGG	2 cut(s)	447, 476
BspACI	CCGC	1 cut(s)	624
BspANI	GGCC	7 cut(s)	63, 134, 190, 308, 347, 398, 460
BspHI	TCATGA	1 cut(s)	570
BspLI	GGNNCC	4 cut(s)	170, 412, 459, 488
BspPI	GGATC	1 cut(s)	568
BspT107I	GGYRCC	1 cut(s)	168
BsrDI	GCAATG	1 cut(s)	135
BssECI	CCNNGG	4 cut(s)	147, 414, 447, 476
BssMI	GATC	2 cut(s)	219, 573
BssT1I	CCWWGG	4 cut(s)	147, 414, 447, 476
Bst2UI	CCWGG	1 cut(s)	349
Bst4CI	ACNGT	1 cut(s)	424
BstC8I	GCNNGC	4 cut(s)	61, 550, 611, 729
BstDEI	CTNAG	2 cut(s)	89, 230
BstDSI	CCRYGG	2 cut(s)	447, 476
BstKTI	GATC	2 cut(s)	222, 576
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	2 cut(s)	219, 573
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 665
BstNI	CCWGG	1 cut(s)	349
BstNSI	RCATGY	2 cut(s)	238, 322
BstSCI	CCNGG	1 cut(s)	347
BstSFI	CTRYAG	1 cut(s)	376
BstV1I	GCAGC	2 cut(s)	213, 743
BstXI	CCANNNNNNTGG	2 cut(s)	165, 712
BsuRI	GGCC	7 cut(s)	63, 134, 190, 308, 347, 398, 460
BtgI	CCRYGG	2 cut(s)	447, 476
BtsI	GCAGTG	1 cut(s)	666
BtsIMutI	CAGTG	2 cut(s)	39, 666
Cac8I	GCNNGC	4 cut(s)	61, 550, 611, 729
CciI	TCATGA	1 cut(s)	570
Cfr13I	GGNCC	5 cut(s)	253, 458, 487, 561, 702
Csp6I	GTAC	2 cut(s)	169, 590
CviQI	GTAC	2 cut(s)	169, 590
DdeI	CTNAG	2 cut(s)	89, 230
DpnI	GATC	2 cut(s)	221, 575
DpnII	GATC	2 cut(s)	219, 573
EaeI	YGGCCR	3 cut(s)	132, 306, 396
Eco130I	CCWWGG	4 cut(s)	147, 414, 447, 476
Eco147I	AGGCCT	2 cut(s)	63, 190
Eco47I	GGWCC	4 cut(s)	253, 487, 561, 702
Eco88I	CYCGRG	1 cut(s)	385
EcoO109I	RGGNCCY	1 cut(s)	458
EcoRII	CCWGG	1 cut(s)	347
EcoT14I	CCWWGG	4 cut(s)	147, 414, 447, 476
ErhI	CCWWGG	4 cut(s)	147, 414, 447, 476
FaqI	GGGAC	1 cut(s)	500
Fnu4HI	GCNGC	2 cut(s)	227, 732
Fsp4HI	GCNGC	2 cut(s)	227, 732
FspBI	CTAG	3 cut(s)	173, 186, 545
GluI	GCNGC	2 cut(s)	227, 732
GsuI	CTGGAG	1 cut(s)	383
HaeIII	GGCC	7 cut(s)	63, 134, 190, 308, 347, 398, 460
HapII	CCGG	1 cut(s)	326
HpaII	CCGG	1 cut(s)	326
HphI	GGTGA	2 cut(s)	613, 757
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	1 cut(s)	694
Hpy188III	TCNNGA	1 cut(s)	571
Hpy8I	GTNNAC	1 cut(s)	373
HpyAV	CCTTC	2 cut(s)	471, 647
HpyCH4III	ACNGT	1 cut(s)	424
HpyCH4V	TGCA	6 cut(s)	59, 86, 140, 315, 335, 609
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 665
HpyF3I	CTNAG	2 cut(s)	89, 230
KpnI	GGTACC	1 cut(s)	172
Kzo9I	GATC	2 cut(s)	219, 573
LmnI	GCTCC	2 cut(s)	431, 656
Lsp1109I	GCAGC	2 cut(s)	213, 743
MaeI	CTAG	3 cut(s)	173, 186, 545
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	2 cut(s)	221, 575
MboI	GATC	2 cut(s)	219, 573
MboII	GAAGA	4 cut(s)	292, 498, 526, 760
MlsI	TGGCCA	2 cut(s)	134, 398
MluCI	AATT	2 cut(s)	18, 753
MluNI	TGGCCA	2 cut(s)	134, 398
MnlI	CCTC	4 cut(s)	74, 383, 449, 476
Mox20I	TGGCCA	2 cut(s)	134, 398
MscI	TGGCCA	2 cut(s)	134, 398
MseI	TTAA	1 cut(s)	759
MslI	CAYNNNNRTG	3 cut(s)	32, 116, 163
Msp20I	TGGCCA	2 cut(s)	134, 398
MspA1I	CMGCKG	1 cut(s)	734
MspI	CCGG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	349
MvaI	CCWGG	1 cut(s)	349
MwoI	GCNNNNNNNGC	2 cut(s)	56, 665
NcoI	CCATGG	2 cut(s)	447, 476
NdeII	GATC	2 cut(s)	219, 573
NlaIV	GGNNCC	4 cut(s)	170, 412, 459, 488
NspI	RCATGY	2 cut(s)	238, 322
OliI	CACNNNNGTG	1 cut(s)	116
PagI	TCATGA	1 cut(s)	570
PceI	AGGCCT	2 cut(s)	63, 190
PkrI	GCNGC	2 cut(s)	228, 733
PsiI	TTATAA	1 cut(s)	791
Psp6I	CCWGG	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	347
PspN4I	GGNNCC	4 cut(s)	170, 412, 459, 488
PspPI	GGNCC	5 cut(s)	253, 458, 487, 561, 702
PsrI	GAACNNNNNNTAC	2 cut(s)	403, 435
PvuII	CAGCTG	1 cut(s)	734
RsaI	GTAC	2 cut(s)	170, 591
RsaNI	GTAC	2 cut(s)	169, 590
RseI	CAYNNNNRTG	3 cut(s)	32, 116, 163
SaqAI	TTAA	1 cut(s)	759
SatI	GCNGC	2 cut(s)	227, 732
Sau3AI	GATC	2 cut(s)	219, 573
Sau96I	GGNCC	5 cut(s)	253, 458, 487, 561, 702
ScrFI	CCNGG	1 cut(s)	349
SetI	ASST	6 cut(s)	116, 174, 210, 416, 615, 736
SfcI	CTRYAG	1 cut(s)	376
SinI	GGWCC	4 cut(s)	253, 487, 561, 702
SmiMI	CAYNNNNRTG	3 cut(s)	32, 116, 163
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
Sse9I	AATT	2 cut(s)	18, 753
SseBI	AGGCCT	2 cut(s)	63, 190
SsiI	CCGC	1 cut(s)	624
SspMI	CTAG	3 cut(s)	173, 186, 545
StuI	AGGCCT	2 cut(s)	63, 190
StyD4I	CCNGG	1 cut(s)	347
StyI	CCWWGG	4 cut(s)	147, 414, 447, 476
TaaI	ACNGT	1 cut(s)	424
TasI	AATT	2 cut(s)	18, 753
TatI	WGTACW	1 cut(s)	589
Tru1I	TTAA	1 cut(s)	759
Tru9I	TTAA	1 cut(s)	759
TscAI	CASTG	2 cut(s)	39, 666
TseI	GCWGC	2 cut(s)	226, 731
TspDTI	ATGAA	2 cut(s)	293, 559
TspRI	CASTG	2 cut(s)	39, 666
VpaK11BI	GGWCC	4 cut(s)	253, 487, 561, 702
XapI	RAATTY	1 cut(s)	753
XceI	RCATGY	2 cut(s)	238, 322
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XspI	CTAG	3 cut(s)	173, 186, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.