Rroxscaffold_4G00290500

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
11003994 .. 11005683
1690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00290500.1

Sequence Viewer

Length: 1095 bp
ATGTTTATGGGGTTGATCCGCCAGACCAAGCTTGTGTTAGCAGTGATTTTGGTGCAGCTCGGGTATGCTGGGCTTTCGATAATCTCTGTGTTTGCTCTAAAGAAGGGAATGAGTCCTTACACATTCATCGTGTACCGAATGGCCATTGCCACTATTGTTCTAGCTCCATTTGCTTTCATTTTGGAGAGGAATTCAAGACCTCCGATGACTTGGTCCATCACTGCAAAGATAATGTTGCTGAGCCTTTTCGACCCTGTGCTTGACCAGAACCTCTACTACATGGGAATGAAGAATTCGAGTGCAACGTTCACTTCTGCAATGTGCAATATGCTGCCTGCTTTTGCATTTTGTCTAGCCTGGATTTTTAGGTTTGAGAAGGTTAGCCTTAAGAAACTGCACAGCATAGCAAAGGTCATGGGGACGATCATCACAGTTGGGGGAGCAATAGTCTTGACTCTAGTTAGAGGTCCTTCATTGTGTCTACCATGGGCCATTGAAGAACAAATTGATCCTCATCAATCTGCGCAATGCTATTCGGGTCAGGCAGACCTCGTGAAAGGAGCTCTATTTATCACAGGAGCTTGTTTCTGCTGGTCTTGGTTTGTCATTTTGCAAGCGATTACCTTAAAATCCTACCCTTGTCAGCTCTCTCTCACAGCAATGATATGCTTTTGGGGTATGGTGGAAGGAGCAATACTGGCTTTTGTAGTTGAAAGGGGACACAGTGGAGTCTGGTCCATACAATTCAACATCAAACTTGTAGCAGCATTTTATGGGGTAGGTAATCCAAAAGTTTCAACTGCAATGCAATCTGGTGTTGCTTATTATGTGATGGGAATGGTAGTGAAGGAAAAGGGACCTGTTTTTTACTCGGCTTTTAATCCCTTGGCCACAGTAATGGTTGCAATCCTGGGTTCCTTTGTTTTAGCAGAACAATTGTACCTTGGGAGTGTTATCGGAGCAGCTGTAATCATCATTGGTCTGTATCTCGTTCTCTGGGGAAAAGCAAAGGACCAGTCTCCTCCATCACAGAGCTGCATGATCGATGAAGTAGCACCACTAACACAAAGATTAATAGATGATCAACAATGTTAA

Protein Analysis

364

Amino Acids

39.88

Weight (kDa)

8.94

Isoelectric Point (pI)

35.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 12 - 143 7.2e-16 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000617)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39510
fragaria_vesca FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 525
AccI GTMKAC 1 cut(s) 481
AciI CCGC 1 cut(s) 19
AclI AACGTT 1 cut(s) 305
AclWI GGATC 2 cut(s) 10, 503
AcoI YGGCCR 2 cut(s) 141, 888
AcsI RAATTY 2 cut(s) 190, 292
AfaI GTAC 2 cut(s) 134, 941
AflII CTTAAG 1 cut(s) 386
AgsI TTSAA 5 cut(s) 195, 497, 713, 748, 798
AjnI CCWGG 2 cut(s) 356, 909
AluBI AGCT 8 cut(s) 31, 58, 164, 563, 581, 646, 965, 1035
AluI AGCT 8 cut(s) 31, 58, 164, 563, 581, 646, 965, 1035
Alw21I GWGCWC 1 cut(s) 565
Alw26I GTCTC 1 cut(s) 1023
AlwI GGATC 2 cut(s) 10, 503
Ama87I CYCGRG 1 cut(s) 59
AoxI GGCC 3 cut(s) 141, 489, 888
ApeKI GCWGC 5 cut(s) 55, 331, 764, 962, 1035
ApoI RAATTY 2 cut(s) 190, 292
ArsI GACNNNNNNTTYG 2 cut(s) 1001, 1033
AseI ATTAAT 1 cut(s) 1073
AspLEI GCGC 1 cut(s) 526
AspS9I GGNCC 6 cut(s) 213, 467, 489, 735, 857, 1012
AvaI CYCGRG 1 cut(s) 59
AvaII GGWCC 5 cut(s) 213, 467, 735, 857, 1012
BaeI ACNNNNGTAYC 2 cut(s) 923, 956
BalI TGGCCA 2 cut(s) 143, 890
BanII GRGCYC 1 cut(s) 565
BarI GAAGNNNNNNTAC 2 cut(s) 678, 710
BauI CACGAG 1 cut(s) 551
Bbv12I GWGCWC 1 cut(s) 565
BbvI GCAGC 5 cut(s) 67, 318, 776, 974, 1022
BccI CCATC 3 cut(s) 224, 826, 1033
BciT130I CCWGG 2 cut(s) 358, 911
BclI TGATCA 1 cut(s) 1081
BcoDI GTCTC 1 cut(s) 1023
BfaI CTAG 3 cut(s) 161, 353, 458
BfrI CTTAAG 1 cut(s) 386
BisI GCNGC 5 cut(s) 56, 332, 765, 963, 1036
BlpI GCTNAGC 1 cut(s) 239
BlsI GCNGC 5 cut(s) 57, 333, 766, 964, 1037
Bme1390I CCNGG 2 cut(s) 358, 911
Bme18I GGWCC 5 cut(s) 213, 467, 735, 857, 1012
BmeT110I CYCGRG 1 cut(s) 59
BmgT120I GGNCC 6 cut(s) 213, 467, 489, 735, 857, 1012
BmiI GGNNCC 2 cut(s) 858, 916
BmrFI CCNGG 2 cut(s) 358, 911
Bpu1102I GCTNAGC 1 cut(s) 239
Bsa29I ATCGAT 1 cut(s) 1044
BsaBI GATNNNNATC 1 cut(s) 513
BsaJI CCNNGG 4 cut(s) 485, 885, 910, 943
BsaXI ACNNNNNCTCC 4 cut(s) 432, 462, 951, 981
Bse1I ACTGG 2 cut(s) 702, 1015
Bse3DI GCAATG 5 cut(s) 144, 324, 533, 666, 810
Bse8I GATNNNNATC 1 cut(s) 513
BseBI CCWGG 2 cut(s) 358, 911
BseCI ATCGAT 1 cut(s) 1044
BseDI CCNNGG 4 cut(s) 485, 885, 910, 943
BseJI GATNNNNATC 1 cut(s) 513
BseMI GCAATG 5 cut(s) 144, 324, 533, 666, 810
BseMII CTCAG 1 cut(s) 230
BseNI ACTGG 2 cut(s) 702, 1015
BseRI GAGGAG 1 cut(s) 1011
BseXI GCAGC 5 cut(s) 67, 318, 776, 974, 1022
BseYI CCCAGC 1 cut(s) 68
BsgI GTGCAG 2 cut(s) 74, 380
BshFI GGCC 3 cut(s) 143, 491, 890
BshVI ATCGAT 1 cut(s) 1044
BsiHKAI GWGCWC 1 cut(s) 565
BsiHKCI CYCGRG 1 cut(s) 59
BslFI GGGAC 3 cut(s) 433, 732, 870
BsmAI GTCTC 1 cut(s) 1023
BsmFI GGGAC 3 cut(s) 433, 732, 870
BsnI GGCC 3 cut(s) 143, 491, 890
BsoBI CYCGRG 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 565
Bsp143I GATC 5 cut(s) 15, 423, 508, 1041, 1081
Bsp1720I GCTNAGC 1 cut(s) 239
Bsp19I CCATGG 1 cut(s) 485
BspACI CCGC 1 cut(s) 19
BspANI GGCC 3 cut(s) 143, 491, 890
BspCNI CTCAG 1 cut(s) 231
BspDI ATCGAT 1 cut(s) 1044
BspLI GGNNCC 2 cut(s) 858, 916
BspPI GGATC 2 cut(s) 10, 503
BspTI CTTAAG 1 cut(s) 386
BsrDI GCAATG 5 cut(s) 144, 324, 533, 666, 810
BsrI ACTGG 2 cut(s) 702, 1015
BssECI CCNNGG 4 cut(s) 485, 885, 910, 943
BssMI GATC 5 cut(s) 15, 423, 508, 1041, 1081
BssSI CACGAG 1 cut(s) 551
BssT1I CCWWGG 3 cut(s) 485, 885, 943
Bst2BI CACGAG 1 cut(s) 551
Bst2UI CCWGG 2 cut(s) 358, 911
Bst4CI ACNGT 3 cut(s) 433, 725, 895
BstAFI CTTAAG 1 cut(s) 386
BstC8I GCNNGC 2 cut(s) 336, 615
BstDEI CTNAG 1 cut(s) 239
BstDSI CCRYGG 1 cut(s) 485
BstHHI GCGC 1 cut(s) 526
BstKTI GATC 5 cut(s) 18, 426, 511, 1044, 1084
BstMAI GTCTC 1 cut(s) 1023
BstMBI GATC 5 cut(s) 15, 423, 508, 1041, 1081
BstMWI GCNNNNNNNGC 2 cut(s) 170, 698
BstNI CCWGG 2 cut(s) 358, 911
BstSCI CCNGG 2 cut(s) 356, 909
BstV1I GCAGC 5 cut(s) 67, 318, 776, 974, 1022
BstXI CCANNNNNNTGG 1 cut(s) 898
Bsu15I ATCGAT 1 cut(s) 1044
BsuRI GGCC 3 cut(s) 143, 491, 890
BsuTUI ATCGAT 1 cut(s) 1044
BtgI CCRYGG 1 cut(s) 485
BtsI GCAGTG 2 cut(s) 48, 219
BtsIMutI CAGTG 3 cut(s) 48, 219, 730
Cac8I GCNNGC 2 cut(s) 336, 615
CfoI GCGC 1 cut(s) 526
Cfr13I GGNCC 6 cut(s) 213, 467, 489, 735, 857, 1012
ClaI ATCGAT 1 cut(s) 1044
Csp6I GTAC 2 cut(s) 133, 940
CviAII CATG 4 cut(s) 280, 415, 486, 1039
CviQI GTAC 2 cut(s) 133, 940
DdeI CTNAG 1 cut(s) 239
DpnI GATC 5 cut(s) 17, 425, 510, 1043, 1083
DpnII GATC 5 cut(s) 15, 423, 508, 1041, 1081
EaeI YGGCCR 2 cut(s) 141, 888
EciI GGCGGA 1 cut(s) 8
Ecl136II GAGCTC 1 cut(s) 563
Eco130I CCWWGG 3 cut(s) 485, 885, 943
Eco24I GRGCYC 1 cut(s) 565
Eco47I GGWCC 5 cut(s) 213, 467, 735, 857, 1012
Eco53kI GAGCTC 1 cut(s) 563
Eco88I CYCGRG 1 cut(s) 59
EcoICRI GAGCTC 1 cut(s) 563
EcoO109I RGGNCCY 2 cut(s) 467, 857
EcoRI GAATTC 2 cut(s) 190, 292
EcoRII CCWGG 2 cut(s) 356, 909
EcoT14I CCWWGG 3 cut(s) 485, 885, 943
EcoT38I GRGCYC 1 cut(s) 565
ErhI CCWWGG 3 cut(s) 485, 885, 943
FaeI CATG 4 cut(s) 283, 418, 489, 1042
FaqI GGGAC 3 cut(s) 433, 732, 870
FatI CATG 4 cut(s) 279, 414, 485, 1038
FbaI TGATCA 1 cut(s) 1081
FblI GTMKAC 1 cut(s) 481
Fnu4HI GCNGC 5 cut(s) 56, 332, 765, 963, 1036
FriOI GRGCYC 1 cut(s) 565
Fsp4HI GCNGC 5 cut(s) 56, 332, 765, 963, 1036
FspBI CTAG 3 cut(s) 161, 353, 458
FspI TGCGCA 1 cut(s) 525
GlaI GCGC 1 cut(s) 525
GluI GCNGC 5 cut(s) 56, 332, 765, 963, 1036
GsaI CCCAGC 1 cut(s) 72
HaeIII GGCC 3 cut(s) 143, 491, 890
HhaI GCGC 1 cut(s) 526
Hin1II CATG 4 cut(s) 283, 418, 489, 1042
Hin6I GCGC 1 cut(s) 524
HinP1I GCGC 1 cut(s) 524
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 3 cut(s) 112, 454, 729
Hpy166II GTNNAC 3 cut(s) 133, 309, 482
Hpy188I TCNGA 2 cut(s) 204, 959
Hpy188III TCNNGA 3 cut(s) 195, 451, 553
Hpy8I GTNNAC 3 cut(s) 133, 309, 482
HpyAV CCTTC 5 cut(s) 97, 370, 480, 680, 841
HpyCH4III ACNGT 3 cut(s) 433, 725, 895
HpyCH4IV ACGT 1 cut(s) 305
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 698
HpyF3I CTNAG 1 cut(s) 239
HpySE526I ACGT 1 cut(s) 305
Hsp92II CATG 4 cut(s) 283, 418, 489, 1042
HspAI GCGC 1 cut(s) 524
Ksp22I TGATCA 1 cut(s) 1081
Kzo9I GATC 5 cut(s) 15, 423, 508, 1041, 1081
LmnI GCTCC 6 cut(s) 169, 440, 560, 578, 689, 959
Lsp1109I GCAGC 5 cut(s) 67, 318, 776, 974, 1022
MaeI CTAG 3 cut(s) 161, 353, 458
MaeII ACGT 1 cut(s) 305
MalI GATC 5 cut(s) 17, 425, 510, 1043, 1083
MboI GATC 5 cut(s) 15, 423, 508, 1041, 1081
MboII GAAGA 2 cut(s) 301, 509
MfeI CAATTG 1 cut(s) 935
MhlI GDGCHC 1 cut(s) 565
MlsI TGGCCA 2 cut(s) 143, 890
MluCI AATT 5 cut(s) 190, 292, 504, 743, 935
MluNI TGGCCA 2 cut(s) 143, 890
MlyI GAGTC 3 cut(s) 121, 448, 738
MnlI CCTC 7 cut(s) 180, 210, 281, 458, 522, 560, 1032
Mox20I TGGCCA 2 cut(s) 143, 890
MscI TGGCCA 2 cut(s) 143, 890
MseI TTAA 5 cut(s) 387, 626, 879, 1073, 1093
MslI CAYNNNNRTG 3 cut(s) 284, 659, 896
Msp20I TGGCCA 2 cut(s) 143, 890
MspA1I CMGCKG 1 cut(s) 965
MspCI CTTAAG 1 cut(s) 386
MspR9I CCNGG 2 cut(s) 358, 911
MunI CAATTG 1 cut(s) 935
MvaI CCWGG 2 cut(s) 358, 911
MwoI GCNNNNNNNGC 2 cut(s) 170, 698
NcoI CCATGG 1 cut(s) 485
NdeII GATC 5 cut(s) 15, 423, 508, 1041, 1081
NlaIII CATG 4 cut(s) 283, 418, 489, 1042
NlaIV GGNNCC 2 cut(s) 858, 916
NmeAIII GCCGAG 1 cut(s) 851
NsbI TGCGCA 1 cut(s) 525
PcsI WCGNNNNNNNCGW 1 cut(s) 302
PflFI GACNNNGTC 1 cut(s) 211
PkrI GCNGC 5 cut(s) 57, 333, 766, 964, 1037
PleI GAGTC 3 cut(s) 120, 448, 737
PpsI GAGTC 3 cut(s) 120, 448, 737
PpuMI RGGWCCY 2 cut(s) 467, 857
PshBI ATTAAT 1 cut(s) 1073
Psp124BI GAGCTC 1 cut(s) 565
Psp1406I AACGTT 1 cut(s) 305
Psp5II RGGWCCY 2 cut(s) 467, 857
Psp6I CCWGG 2 cut(s) 356, 909
PspFI CCCAGC 1 cut(s) 68
PspGI CCWGG 2 cut(s) 356, 909
PspN4I GGNNCC 2 cut(s) 858, 916
PspPI GGNCC 6 cut(s) 213, 467, 489, 735, 857, 1012
PspPPI RGGWCCY 2 cut(s) 467, 857
PsrI GAACNNNNNNTAC 2 cut(s) 260, 292
PsyI GACNNNGTC 1 cut(s) 211
PvuII CAGCTG 1 cut(s) 965
RsaI GTAC 2 cut(s) 134, 941
RsaNI GTAC 2 cut(s) 133, 940
RseI CAYNNNNRTG 3 cut(s) 284, 659, 896
SacI GAGCTC 1 cut(s) 565
SaqAI TTAA 5 cut(s) 387, 626, 879, 1073, 1093
SatI GCNGC 5 cut(s) 56, 332, 765, 963, 1036
Sau3AI GATC 5 cut(s) 15, 423, 508, 1041, 1081
Sau96I GGNCC 6 cut(s) 213, 467, 489, 735, 857, 1012
SchI GAGTC 3 cut(s) 121, 448, 738
ScrFI CCNGG 2 cut(s) 358, 911
SduI GDGCHC 1 cut(s) 565
SinI GGWCC 5 cut(s) 213, 467, 735, 857, 1012
SmiMI CAYNNNNRTG 3 cut(s) 284, 659, 896
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 5 cut(s) 190, 292, 504, 743, 935
SsiI CCGC 1 cut(s) 19
SspMI CTAG 3 cut(s) 161, 353, 458
SstI GAGCTC 1 cut(s) 565
StyD4I CCNGG 2 cut(s) 356, 909
StyI CCWWGG 3 cut(s) 485, 885, 943
TaaI ACNGT 3 cut(s) 433, 725, 895
TaiI ACGT 1 cut(s) 308
TaqI TCGA 4 cut(s) 77, 249, 296, 1044
TasI AATT 5 cut(s) 190, 292, 504, 743, 935
Tru1I TTAA 5 cut(s) 387, 626, 879, 1073, 1093
Tru9I TTAA 5 cut(s) 387, 626, 879, 1073, 1093
TscAI CASTG 3 cut(s) 48, 226, 730
TseI GCWGC 5 cut(s) 55, 331, 764, 962, 1035
TspDTI ATGAA 5 cut(s) 115, 166, 302, 462, 1062
TspRI CASTG 3 cut(s) 48, 226, 730
Tth111I GACNNNGTC 1 cut(s) 211
Vha464I CTTAAG 1 cut(s) 386
VpaK11BI GGWCC 5 cut(s) 213, 467, 735, 857, 1012
VspI ATTAAT 1 cut(s) 1073
XapI RAATTY 2 cut(s) 190, 292
XmiI GTMKAC 1 cut(s) 481
XspI CTAG 3 cut(s) 161, 353, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.