Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Reverse (-)

43198730 .. 43199197

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG296600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAGTTGCATGACTGTAATTCTTGTAATTGCAATCTGTTTTGTTCAAGCCTTGTATGCAGGCCTCTCCATCACCACAATCCTTGCACTAGGGCAGTGCAAGAGCCACTACACCTCTGTGGTGTATCGTATGGCCATTACAACTGCCCTGTCAAGTCCATTGGCATGGTATCTAGAGAGAAATTCTAGGCCTACAATGACCATCAAGGTCATGGCAAAGATCATGCTGCTAAGCATGTTTGACCCTGTAATGAACTTAAACTTATACTATGCGGGCATGGATAACTCCAATGCCACATTCACATCTGCCATGTGCAACATGCTTCCGGTGTTAGCATTTGTCATGGCCTGGATTTTCAGGTATGAATCTGCGAGTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

126

Amino Acids

14.05

Weight (kDa)

8.76

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	11 - 123	4.5e-08	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	272
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	47
AjnI	CCWGG	1 cut(s)	347
AjuI	GAANNNNNNNTTGG	2 cut(s)	281, 313
AleI	CACNNNNGTG	1 cut(s)	116
AoxI	GGCC	4 cut(s)	61, 132, 188, 345
ApeKI	GCWGC	1 cut(s)	226
ApoI	RAATTY	1 cut(s)	181
AsuHPI	GGTGA	1 cut(s)	64
BalI	TGGCCA	1 cut(s)	134
BbvI	GCAGC	1 cut(s)	213
BccI	CCATC	2 cut(s)	77, 209
BciT130I	CCWGG	1 cut(s)	349
BfaI	CTAG	3 cut(s)	89, 173, 186
BisI	GCNGC	1 cut(s)	227
BlpI	GCTNAGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	228
Bme1390I	CCNGG	1 cut(s)	349
BmrFI	CCNGG	1 cut(s)	349
Bpu1102I	GCTNAGC	1 cut(s)	230
BsaWI	WCCGGW	1 cut(s)	325
BseBI	CCWGG	1 cut(s)	349
BseXI	GCAGC	1 cut(s)	213
BshFI	GGCC	4 cut(s)	63, 134, 190, 347
BsiSI	CCGG	1 cut(s)	326
BsnI	GGCC	4 cut(s)	63, 134, 190, 347
Bsp143I	GATC	1 cut(s)	219
Bsp1720I	GCTNAGC	1 cut(s)	230
BspACI	CCGC	1 cut(s)	272
BspANI	GGCC	4 cut(s)	63, 134, 190, 347
BssMI	GATC	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	349
Bst4CI	ACNGT	1 cut(s)	16
BstC8I	GCNNGC	2 cut(s)	61, 274
BstDEI	CTNAG	1 cut(s)	230
BstKTI	GATC	1 cut(s)	222
BstMBI	GATC	1 cut(s)	219
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	1 cut(s)	349
BstNSI	RCATGY	2 cut(s)	238, 322
BstSCI	CCNGG	1 cut(s)	347
BstV1I	GCAGC	1 cut(s)	213
BstXI	CCANNNNNNTGG	1 cut(s)	165
BsuRI	GGCC	4 cut(s)	63, 134, 190, 347
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	1 cut(s)	101
Cac8I	GCNNGC	2 cut(s)	61, 274
CspCI	CAANNNNNGTGG	2 cut(s)	64, 99
CviAII	CATG	9 cut(s)	10, 165, 211, 223, 235, 277, 310, 319, 343
CviJI	RGCY	6 cut(s)	50, 63, 105, 134, 190, 347
CviKI_1	RGCY	6 cut(s)	50, 63, 105, 134, 190, 347
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	1 cut(s)	221
DpnII	GATC	1 cut(s)	219
EaeI	YGGCCR	1 cut(s)	132
Eco147I	AGGCCT	2 cut(s)	63, 190
EcoRII	CCWGG	1 cut(s)	347
FaeI	CATG	9 cut(s)	13, 168, 214, 226, 238, 280, 313, 322, 346
FatI	CATG	9 cut(s)	9, 164, 210, 222, 234, 276, 309, 318, 342
FauI	CCCGC	1 cut(s)	265
Fnu4HI	GCNGC	1 cut(s)	227
Fsp4HI	GCNGC	1 cut(s)	227
FspBI	CTAG	3 cut(s)	89, 173, 186
GluI	GCNGC	1 cut(s)	227
HaeIII	GGCC	4 cut(s)	63, 134, 190, 347
HapII	CCGG	1 cut(s)	326
Hin1II	CATG	9 cut(s)	13, 168, 214, 226, 238, 280, 313, 322, 346
HinfI	GANTC	2 cut(s)	365, 373
HpaII	CCGG	1 cut(s)	326
HphI	GGTGA	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	173
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4V	TGCA	6 cut(s)	9, 32, 59, 86, 99, 315
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	1 cut(s)	230
Hsp92II	CATG	9 cut(s)	13, 168, 214, 226, 238, 280, 313, 322, 346
Kzo9I	GATC	1 cut(s)	219
LpnPI	CCDG	7 cut(s)	45, 161, 258, 334, 339, 343, 361
Lsp1109I	GCAGC	1 cut(s)	213
MaeI	CTAG	3 cut(s)	89, 173, 186
MalI	GATC	1 cut(s)	221
MboI	GATC	1 cut(s)	219
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	3 cut(s)	18, 27, 181
MluNI	TGGCCA	1 cut(s)	134
MnlI	CCTC	2 cut(s)	74, 124
Mox20I	TGGCCA	1 cut(s)	134
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	1 cut(s)	257
MslI	CAYNNNNRTG	2 cut(s)	116, 163
Msp20I	TGGCCA	1 cut(s)	134
MspI	CCGG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	349
MvaI	CCWGG	1 cut(s)	349
MwoI	GCNNNNNNNGC	1 cut(s)	56
NdeII	GATC	1 cut(s)	219
NlaIII	CATG	9 cut(s)	13, 168, 214, 226, 238, 280, 313, 322, 346
NspI	RCATGY	2 cut(s)	238, 322
OliI	CACNNNNGTG	1 cut(s)	116
PceI	AGGCCT	2 cut(s)	63, 190
PfeI	GAWTC	1 cut(s)	365
PkrI	GCNGC	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	347
RseI	CAYNNNNRTG	2 cut(s)	116, 163
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	1 cut(s)	227
Sau3AI	GATC	1 cut(s)	219
ScrFI	CCNGG	1 cut(s)	349
SetI	ASST	3 cut(s)	116, 210, 362
SmiMI	CAYNNNNRTG	2 cut(s)	116, 163
Sse9I	AATT	3 cut(s)	18, 27, 181
SseBI	AGGCCT	2 cut(s)	63, 190
SsiI	CCGC	1 cut(s)	272
SspMI	CTAG	3 cut(s)	89, 173, 186
StuI	AGGCCT	2 cut(s)	63, 190
StyD4I	CCNGG	1 cut(s)	347
TaaI	ACNGT	1 cut(s)	16
TasI	AATT	3 cut(s)	18, 27, 181
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TscAI	CASTG	1 cut(s)	101
TseI	GCWGC	1 cut(s)	226
TspDTI	ATGAA	2 cut(s)	266, 378
TspRI	CASTG	1 cut(s)	101
XapI	RAATTY	1 cut(s)	181
XbaI	TCTAGA	1 cut(s)	172
XceI	RCATGY	2 cut(s)	238, 322
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XspI	CTAG	3 cut(s)	89, 173, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.