Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Reverse (-)

43206224 .. 43209334

Gene Structure 3111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG296700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGTTTATGGGGTTGATCCGCCAGACAAAGCTTGTGTTAGCGGTGATTTTGGTGCAGCTCGGGTATGCTGGGCTTTCGATAATCTCTGTGTTTGCTCTAAAGAAGGGAATGAGTCCTTACACATTCATCGTGTACCGAATGGCCATTGCCACTATTGTTCTAGCTCCATTTGTATTCATTTTGGAGAGGAATTCAAGACCTCCGATGACTTGGTCCATCACTGCAAAGATAATGTTGCTGAGCCTTTTCGACCCTGTGCTTGACCAGAACCTCTACTACATGGGAATGAAGAATTCGAGTGCAACGTTCACTTCTGCAATGTGCAATATGCTGCCTGCTTTTGCATTTTGTCTAGCCTGGATTTTTAGGTTTGAGAAGGTTAGCCTTAAGAAACTGCACAGCATAGCAAAGGTCATGGGGACGATCATCACAGTTGGAGGAGCAATAGTCTTGACTCTAGTTAGAGGTCCCTCATTGTGTCTACCATGGGCCATTGAAGAACAAATTGATCCTCATCAATCTGCGCAATGTTACTCGGGTCAGTCAGACCTCGTGAAAGGAGCTCTATTTATCACAGGAGCTTGTTTCTGCTGGTCTTTAGGGATGGCATTAAAACCCATGGGTACGGGTACCCGCGGATCCTACCCTTGTCAGCTCTGTCTCACAGCAATGATATGCTTTTGGGGTATGGTGGAAGGAGCAATACTGGCTTTTGTAGTTGAAAGGGGACATAGTGGAGTCTGGTCCATACAATTCAACATCAAACTTGTAGCAGCATTTTATGGGGCAATGCAATCTGGTGTTGCTTATTATGTGATGGGAATGGTAGTGAAGGAAAAGGGACCTGTTTTAAACTGTTTTTTACTCGGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

291

Amino Acids

31.94

Weight (kDa)

9.25

Isoelectric Point (pI)

30.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	12 - 143	9.9e-16	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	525
Acc65I	GGTACC	1 cut(s)	629
AccB1I	GGYRCC	1 cut(s)	629
AccI	GTMKAC	1 cut(s)	481
AccII	CGCG	1 cut(s)	636
AciI	CCGC	4 cut(s)	19, 41, 634, 636
AclI	AACGTT	1 cut(s)	305
AclWI	GGATC	4 cut(s)	10, 503, 633, 646
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	2 cut(s)	190, 292
AfaI	GTAC	3 cut(s)	134, 625, 631
AflII	CTTAAG	1 cut(s)	386
AgsI	TTSAA	4 cut(s)	195, 497, 722, 757
AjnI	CCWGG	1 cut(s)	356
AluBI	AGCT	6 cut(s)	31, 58, 164, 563, 581, 655
AluI	AGCT	6 cut(s)	31, 58, 164, 563, 581, 655
Alw21I	GWGCWC	1 cut(s)	565
Alw26I	GTCTC	1 cut(s)	665
AlwI	GGATC	4 cut(s)	10, 503, 633, 646
Ama87I	CYCGRG	2 cut(s)	59, 535
AoxI	GGCC	2 cut(s)	141, 489
ApeKI	GCWGC	3 cut(s)	55, 331, 773
ApoI	RAATTY	2 cut(s)	190, 292
Asp718I	GGTACC	1 cut(s)	629
AspLEI	GCGC	1 cut(s)	526
AspS9I	GGNCC	5 cut(s)	213, 467, 489, 744, 842
AsuHPI	GGTGA	1 cut(s)	55
AvaI	CYCGRG	2 cut(s)	59, 535
AvaII	GGWCC	4 cut(s)	213, 467, 744, 842
BalI	TGGCCA	1 cut(s)	143
BamHI	GGATCC	1 cut(s)	638
BanI	GGYRCC	1 cut(s)	629
BanII	GRGCYC	1 cut(s)	565
BarI	GAAGNNNNNNTAC	2 cut(s)	687, 719
BauI	CACGAG	1 cut(s)	551
Bbv12I	GWGCWC	1 cut(s)	565
BbvI	GCAGC	3 cut(s)	67, 318, 785
BccI	CCATC	3 cut(s)	224, 598, 811
BciT130I	CCWGG	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	665
BfaI	CTAG	3 cut(s)	161, 353, 458
BfrI	CTTAAG	1 cut(s)	386
BisI	GCNGC	3 cut(s)	56, 332, 774
BlpI	GCTNAGC	1 cut(s)	239
BlsI	GCNGC	3 cut(s)	57, 333, 775
Bme1390I	CCNGG	1 cut(s)	358
Bme18I	GGWCC	4 cut(s)	213, 467, 744, 842
BmeT110I	CYCGRG	2 cut(s)	59, 535
BmgT120I	GGNCC	5 cut(s)	213, 467, 489, 744, 842
BmiI	GGNNCC	4 cut(s)	469, 631, 640, 843
BmrFI	CCNGG	1 cut(s)	358
Bpu1102I	GCTNAGC	1 cut(s)	239
BsaBI	GATNNNNATC	1 cut(s)	513
BsaJI	CCNNGG	3 cut(s)	485, 618, 634
BsaXI	ACNNNNNCTCC	2 cut(s)	432, 462
Bse1I	ACTGG	1 cut(s)	711
Bse3DI	GCAATG	5 cut(s)	144, 324, 533, 675, 795
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	1 cut(s)	358
BseDI	CCNNGG	3 cut(s)	485, 618, 634
BseGI	GGATG	1 cut(s)	609
BseJI	GATNNNNATC	1 cut(s)	513
BseMI	GCAATG	5 cut(s)	144, 324, 533, 675, 795
BseMII	CTCAG	1 cut(s)	230
BseNI	ACTGG	1 cut(s)	711
BseRI	GAGGAG	1 cut(s)	453
BseXI	GCAGC	3 cut(s)	67, 318, 785
BseYI	CCCAGC	1 cut(s)	68
BsgI	GTGCAG	2 cut(s)	74, 380
Bsh1236I	CGCG	1 cut(s)	636
BshFI	GGCC	2 cut(s)	143, 491
BshNI	GGYRCC	1 cut(s)	629
BsiHKAI	GWGCWC	1 cut(s)	565
BsiHKCI	CYCGRG	2 cut(s)	59, 535
BslFI	GGGAC	4 cut(s)	433, 453, 741, 855
BsmAI	GTCTC	1 cut(s)	665
BsmFI	GGGAC	4 cut(s)	433, 453, 741, 855
BsnI	GGCC	2 cut(s)	143, 491
BsoBI	CYCGRG	2 cut(s)	59, 535
Bsp1286I	GDGCHC	1 cut(s)	565
Bsp143I	GATC	4 cut(s)	15, 423, 508, 638
Bsp1720I	GCTNAGC	1 cut(s)	239
Bsp19I	CCATGG	2 cut(s)	485, 618
BspACI	CCGC	4 cut(s)	19, 41, 634, 636
BspANI	GGCC	2 cut(s)	143, 491
BspCNI	CTCAG	1 cut(s)	231
BspFNI	CGCG	1 cut(s)	636
BspLI	GGNNCC	4 cut(s)	469, 631, 640, 843
BspPI	GGATC	4 cut(s)	10, 503, 633, 646
BspT107I	GGYRCC	1 cut(s)	629
BspTI	CTTAAG	1 cut(s)	386
BsrDI	GCAATG	5 cut(s)	144, 324, 533, 675, 795
BsrI	ACTGG	1 cut(s)	711
BssECI	CCNNGG	3 cut(s)	485, 618, 634
BssMI	GATC	4 cut(s)	15, 423, 508, 638
BssSI	CACGAG	1 cut(s)	551
BssT1I	CCWWGG	2 cut(s)	485, 618
Bst2BI	CACGAG	1 cut(s)	551
Bst2UI	CCWGG	1 cut(s)	358
Bst4CI	ACNGT	2 cut(s)	433, 857
BstAFI	CTTAAG	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	1 cut(s)	239
BstDSI	CCRYGG	3 cut(s)	485, 618, 634
BstF5I	GGATG	1 cut(s)	609
BstFNI	CGCG	1 cut(s)	636
BstHHI	GCGC	1 cut(s)	526
BstKTI	GATC	4 cut(s)	18, 426, 511, 641
BstMAI	GTCTC	1 cut(s)	665
BstMBI	GATC	4 cut(s)	15, 423, 508, 638
BstMWI	GCNNNNNNNGC	1 cut(s)	707
BstNI	CCWGG	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	356
BstUI	CGCG	1 cut(s)	636
BstV1I	GCAGC	3 cut(s)	67, 318, 785
BstX2I	RGATCY	1 cut(s)	638
BstYI	RGATCY	1 cut(s)	638
BsuRI	GGCC	2 cut(s)	143, 491
BtgI	CCRYGG	3 cut(s)	485, 618, 634
BtsCI	GGATG	1 cut(s)	609
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	336
CfoI	GCGC	1 cut(s)	526
Cfr13I	GGNCC	5 cut(s)	213, 467, 489, 744, 842
Cfr42I	CCGCGG	1 cut(s)	637
Csp6I	GTAC	3 cut(s)	133, 624, 630
CviAII	CATG	4 cut(s)	280, 415, 486, 619
CviQI	GTAC	3 cut(s)	133, 624, 630
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	4 cut(s)	17, 425, 510, 640
DpnII	GATC	4 cut(s)	15, 423, 508, 638
DraI	TTTAAA	1 cut(s)	852
EaeI	YGGCCR	1 cut(s)	141
EciI	GGCGGA	1 cut(s)	8
Ecl136II	GAGCTC	1 cut(s)	563
Eco130I	CCWWGG	2 cut(s)	485, 618
Eco24I	GRGCYC	1 cut(s)	565
Eco47I	GGWCC	4 cut(s)	213, 467, 744, 842
Eco53kI	GAGCTC	1 cut(s)	563
Eco88I	CYCGRG	2 cut(s)	59, 535
EcoICRI	GAGCTC	1 cut(s)	563
EcoO109I	RGGNCCY	2 cut(s)	467, 842
EcoRI	GAATTC	2 cut(s)	190, 292
EcoRII	CCWGG	1 cut(s)	356
EcoT14I	CCWWGG	2 cut(s)	485, 618
EcoT38I	GRGCYC	1 cut(s)	565
ErhI	CCWWGG	2 cut(s)	485, 618
FaeI	CATG	4 cut(s)	283, 418, 489, 622
FaqI	GGGAC	4 cut(s)	433, 453, 741, 855
FatI	CATG	4 cut(s)	279, 414, 485, 618
FauI	CCCGC	1 cut(s)	641
FblI	GTMKAC	1 cut(s)	481
Fnu4HI	GCNGC	3 cut(s)	56, 332, 774
FokI	GGATG	1 cut(s)	616
FriOI	GRGCYC	1 cut(s)	565
Fsp4HI	GCNGC	3 cut(s)	56, 332, 774
FspBI	CTAG	3 cut(s)	161, 353, 458
FspI	TGCGCA	1 cut(s)	525
GlaI	GCGC	1 cut(s)	525
GluI	GCNGC	3 cut(s)	56, 332, 774
GsaI	CCCAGC	1 cut(s)	72
HaeIII	GGCC	2 cut(s)	143, 491
HhaI	GCGC	1 cut(s)	526
Hin1II	CATG	4 cut(s)	283, 418, 489, 622
Hin6I	GCGC	1 cut(s)	524
HinP1I	GCGC	1 cut(s)	524
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	3 cut(s)	112, 454, 738
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	3 cut(s)	133, 309, 482
Hpy188I	TCNGA	2 cut(s)	204, 547
Hpy188III	TCNNGA	3 cut(s)	195, 451, 553
Hpy8I	GTNNAC	3 cut(s)	133, 309, 482
HpyAV	CCTTC	4 cut(s)	97, 370, 689, 826
HpyCH4III	ACNGT	2 cut(s)	433, 857
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	8 cut(s)	55, 224, 302, 317, 324, 344, 397, 793
HpyF10VI	GCNNNNNNNGC	1 cut(s)	707
HpyF3I	CTNAG	1 cut(s)	239
HpySE526I	ACGT	1 cut(s)	305
Hsp92II	CATG	4 cut(s)	283, 418, 489, 622
HspAI	GCGC	1 cut(s)	524
KpnI	GGTACC	1 cut(s)	633
KspI	CCGCGG	1 cut(s)	637
Kzo9I	GATC	4 cut(s)	15, 423, 508, 638
LmnI	GCTCC	5 cut(s)	169, 440, 560, 578, 698
Lsp1109I	GCAGC	3 cut(s)	67, 318, 785
MaeI	CTAG	3 cut(s)	161, 353, 458
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	1 cut(s)	530
MalI	GATC	4 cut(s)	17, 425, 510, 640
MboI	GATC	4 cut(s)	15, 423, 508, 638
MboII	GAAGA	2 cut(s)	301, 509
MflI	RGATCY	1 cut(s)	638
MhlI	GDGCHC	1 cut(s)	565
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	4 cut(s)	190, 292, 504, 752
MluNI	TGGCCA	1 cut(s)	143
MlyI	GAGTC	3 cut(s)	121, 448, 747
MmeI	TCCRAC	1 cut(s)	415
MnlI	CCTC	8 cut(s)	180, 210, 281, 431, 458, 481, 522, 560
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	4 cut(s)	387, 611, 851, 874
MslI	CAYNNNNRTG	2 cut(s)	284, 668
Msp20I	TGGCCA	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	636
MspCI	CTTAAG	1 cut(s)	386
MspR9I	CCNGG	1 cut(s)	358
MvaI	CCWGG	1 cut(s)	358
MvnI	CGCG	1 cut(s)	636
MwoI	GCNNNNNNNGC	1 cut(s)	707
NcoI	CCATGG	2 cut(s)	485, 618
NdeII	GATC	4 cut(s)	15, 423, 508, 638
NlaIII	CATG	4 cut(s)	283, 418, 489, 622
NlaIV	GGNNCC	4 cut(s)	469, 631, 640, 843
NmeAIII	GCCGAG	1 cut(s)	846
NsbI	TGCGCA	1 cut(s)	525
PcsI	WCGNNNNNNNCGW	1 cut(s)	302
PflFI	GACNNNGTC	1 cut(s)	211
PkrI	GCNGC	3 cut(s)	57, 333, 775
PleI	GAGTC	3 cut(s)	120, 448, 746
PpsI	GAGTC	3 cut(s)	120, 448, 746
PpuMI	RGGWCCY	2 cut(s)	467, 842
Psp124BI	GAGCTC	1 cut(s)	565
Psp1406I	AACGTT	1 cut(s)	305
Psp5II	RGGWCCY	2 cut(s)	467, 842
Psp6I	CCWGG	1 cut(s)	356
PspFI	CCCAGC	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	356
PspN4I	GGNNCC	4 cut(s)	469, 631, 640, 843
PspPI	GGNCC	5 cut(s)	213, 467, 489, 744, 842
PspPPI	RGGWCCY	2 cut(s)	467, 842
PsrI	GAACNNNNNNTAC	2 cut(s)	260, 292
PsuI	RGATCY	1 cut(s)	638
PsyI	GACNNNGTC	1 cut(s)	211
RsaI	GTAC	3 cut(s)	134, 625, 631
RsaNI	GTAC	3 cut(s)	133, 624, 630
RseI	CAYNNNNRTG	2 cut(s)	284, 668
SacI	GAGCTC	1 cut(s)	565
SacII	CCGCGG	1 cut(s)	637
SaqAI	TTAA	4 cut(s)	387, 611, 851, 874
SatI	GCNGC	3 cut(s)	56, 332, 774
Sau3AI	GATC	4 cut(s)	15, 423, 508, 638
Sau96I	GGNCC	5 cut(s)	213, 467, 489, 744, 842
SchI	GAGTC	3 cut(s)	121, 448, 747
ScrFI	CCNGG	1 cut(s)	358
SduI	GDGCHC	1 cut(s)	565
Sfr303I	CCGCGG	1 cut(s)	637
SgrBI	CCGCGG	1 cut(s)	637
SinI	GGWCC	4 cut(s)	213, 467, 744, 842
SmiMI	CAYNNNNRTG	2 cut(s)	284, 668
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	4 cut(s)	190, 292, 504, 752
SsiI	CCGC	4 cut(s)	19, 41, 634, 636
SspMI	CTAG	3 cut(s)	161, 353, 458
SstI	GAGCTC	1 cut(s)	565
StyD4I	CCNGG	1 cut(s)	356
StyI	CCWWGG	2 cut(s)	485, 618
TaaI	ACNGT	2 cut(s)	433, 857
TaiI	ACGT	1 cut(s)	308
TaqI	TCGA	3 cut(s)	77, 249, 296
TasI	AATT	4 cut(s)	190, 292, 504, 752
Tru1I	TTAA	4 cut(s)	387, 611, 851, 874
Tru9I	TTAA	4 cut(s)	387, 611, 851, 874
TscAI	CASTG	1 cut(s)	226
TseI	GCWGC	3 cut(s)	55, 331, 773
TspDTI	ATGAA	3 cut(s)	115, 166, 302
TspRI	CASTG	1 cut(s)	226
Tth111I	GACNNNGTC	1 cut(s)	211
Vha464I	CTTAAG	1 cut(s)	386
VpaK11BI	GGWCC	4 cut(s)	213, 467, 744, 842
XapI	RAATTY	2 cut(s)	190, 292
XmiI	GTMKAC	1 cut(s)	481
XspI	CTAG	3 cut(s)	161, 353, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.