Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Reverse (-)

12156470 .. 12157769

Gene Structure 1300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00227880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCAAAAGCAGGCAGCGCATTGCAGAAGTGAACGTTGCACTCGAATCCTTTGTCATTTGGAAATGGCAATTATCTTAAGATCCTACCCTTGTCAGCTCTCTCTCACAGCAATGATATGCTTTTGGGGTATGGTGGAAGGAGCAATACTGGCTTTTGTAGTTGAAAGGGGACATAGTGGAGTCTGGTCCATACAATTCAACATCAAACTTGTAGCAGCATTTTATGGGGCAATGCAATCTGTTGTTGCTTATTATGTGATGGGAATGGTAGTGAAGGAAAAGGGACCTGTTTTTTACTCGGCTTTTAATCCCTTGGCCACAGTAATGGTTGCAATCCTGGGTTCCTTTGTTTTGGCAGAACAATTGTACCTTGAGAGTGTTATCGGAGCTGCTGTAATCATCATTGGTCTGTATCTCATTCTCTGGGGAAAAGCAAAGGACCAGTCTCCTCCATCACAGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

154

Amino Acids

16.99

Weight (kDa)

8.55

Isoelectric Point (pI)

47.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	38 - 141	3.3e-08	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	34
AclWI	GGATC	1 cut(s)	75
AcoI	YGGCCR	1 cut(s)	315
AfaI	GTAC	1 cut(s)	368
AflII	CTTAAG	1 cut(s)	76
AgsI	TTSAA	2 cut(s)	164, 199
AjnI	CCWGG	1 cut(s)	336
AluBI	AGCT	2 cut(s)	97, 389
AluI	AGCT	2 cut(s)	97, 389
Alw26I	GTCTC	1 cut(s)	450
AlwI	GGATC	1 cut(s)	75
AoxI	GGCC	1 cut(s)	315
ApeKI	GCWGC	3 cut(s)	14, 215, 389
ArsI	GACNNNNNNTTYG	4 cut(s)	37, 69, 428, 460
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	3 cut(s)	186, 284, 439
AvaII	GGWCC	3 cut(s)	186, 284, 439
BaeI	ACNNNNGTAYC	2 cut(s)	350, 383
BalI	TGGCCA	1 cut(s)	317
BarI	GAAGNNNNNNTAC	2 cut(s)	129, 161
BbvI	GCAGC	3 cut(s)	26, 227, 376
BccI	CCATC	2 cut(s)	253, 460
BciT130I	CCWGG	1 cut(s)	338
BcoDI	GTCTC	1 cut(s)	450
BfrI	CTTAAG	1 cut(s)	76
BisI	GCNGC	3 cut(s)	15, 216, 390
BlsI	GCNGC	3 cut(s)	16, 217, 391
Bme1390I	CCNGG	1 cut(s)	338
Bme18I	GGWCC	3 cut(s)	186, 284, 439
BmgT120I	GGNCC	3 cut(s)	186, 284, 439
BmiI	GGNNCC	2 cut(s)	285, 343
BmrFI	CCNGG	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	392
BsaJI	CCNNGG	2 cut(s)	312, 337
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bse1I	ACTGG	2 cut(s)	153, 442
Bse3DI	GCAATG	3 cut(s)	19, 117, 237
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	2 cut(s)	312, 337
BseMI	GCAATG	3 cut(s)	19, 117, 237
BseNI	ACTGG	2 cut(s)	153, 442
BseRI	GAGGAG	1 cut(s)	438
BseXI	GCAGC	3 cut(s)	26, 227, 376
BshFI	GGCC	1 cut(s)	317
BslFI	GGGAC	2 cut(s)	183, 297
BsmAI	GTCTC	1 cut(s)	450
BsmFI	GGGAC	2 cut(s)	183, 297
BsnI	GGCC	1 cut(s)	317
Bsp143I	GATC	1 cut(s)	80
BspANI	GGCC	1 cut(s)	317
BspLI	GGNNCC	2 cut(s)	285, 343
BspPI	GGATC	1 cut(s)	75
BspTI	CTTAAG	1 cut(s)	76
BsrDI	GCAATG	3 cut(s)	19, 117, 237
BsrI	ACTGG	2 cut(s)	153, 442
BssECI	CCNNGG	2 cut(s)	312, 337
BssMI	GATC	1 cut(s)	80
BssT1I	CCWWGG	1 cut(s)	312
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	2 cut(s)	322, 459
BstAFI	CTTAAG	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	1 cut(s)	83
BstMAI	GTCTC	1 cut(s)	450
BstMBI	GATC	1 cut(s)	80
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 149
BstNI	CCWGG	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	336
BstV1I	GCAGC	3 cut(s)	26, 227, 376
BstX2I	RGATCY	1 cut(s)	80
BstXI	CCANNNNNNTGG	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	317
BtsIMutI	CAGTG	1 cut(s)	464
Cac8I	GCNNGC	1 cut(s)	12
CfoI	GCGC	1 cut(s)	19
Cfr13I	GGNCC	3 cut(s)	186, 284, 439
Csp6I	GTAC	1 cut(s)	367
CviJI	RGCY	5 cut(s)	97, 152, 302, 317, 389
CviKI_1	RGCY	5 cut(s)	97, 152, 302, 317, 389
CviQI	GTAC	1 cut(s)	367
DpnI	GATC	1 cut(s)	82
DpnII	GATC	1 cut(s)	80
EaeI	YGGCCR	1 cut(s)	315
Eco130I	CCWWGG	1 cut(s)	312
Eco47I	GGWCC	3 cut(s)	186, 284, 439
EcoO109I	RGGNCCY	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	312
FaiI	YATR	6 cut(s)	118, 131, 174, 191, 225, 255
FaqI	GGGAC	2 cut(s)	183, 297
Fnu4HI	GCNGC	3 cut(s)	15, 216, 390
Fsp4HI	GCNGC	3 cut(s)	15, 216, 390
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	3 cut(s)	15, 216, 390
HaeIII	GGCC	1 cut(s)	317
HhaI	GCGC	1 cut(s)	19
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HinfI	GANTC	2 cut(s)	45, 180
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	1 cut(s)	386
Hpy8I	GTNNAC	1 cut(s)	32
HpyAV	CCTTC	2 cut(s)	131, 268
HpyCH4III	ACNGT	2 cut(s)	322, 459
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	5 cut(s)	4, 24, 39, 235, 332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 149
HpySE526I	ACGT	1 cut(s)	34
HspAI	GCGC	1 cut(s)	17
Kzo9I	GATC	1 cut(s)	80
LmnI	GCTCC	2 cut(s)	140, 386
LpnPI	CCDG	7 cut(s)	134, 169, 300, 323, 350, 409, 455
Lsp1109I	GCAGC	3 cut(s)	26, 227, 376
MaeII	ACGT	1 cut(s)	34
MalI	GATC	1 cut(s)	82
MboI	GATC	1 cut(s)	80
MfeI	CAATTG	1 cut(s)	362
MflI	RGATCY	1 cut(s)	80
MlsI	TGGCCA	1 cut(s)	317
MluCI	AATT	3 cut(s)	69, 194, 362
MluNI	TGGCCA	1 cut(s)	317
MlyI	GAGTC	1 cut(s)	189
MnlI	CCTC	1 cut(s)	459
Mox20I	TGGCCA	1 cut(s)	317
MscI	TGGCCA	1 cut(s)	317
MseI	TTAA	2 cut(s)	77, 306
MslI	CAYNNNNRTG	3 cut(s)	110, 323, 457
Msp20I	TGGCCA	1 cut(s)	317
MspCI	CTTAAG	1 cut(s)	76
MspR9I	CCNGG	1 cut(s)	338
MunI	CAATTG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	2 cut(s)	16, 149
NdeII	GATC	1 cut(s)	80
NlaIV	GGNNCC	2 cut(s)	285, 343
NmeAIII	GCCGAG	1 cut(s)	278
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	45
PkrI	GCNGC	3 cut(s)	16, 217, 391
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PpuMI	RGGWCCY	1 cut(s)	284
Psp1406I	AACGTT	1 cut(s)	34
Psp5II	RGGWCCY	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	336
PspN4I	GGNNCC	2 cut(s)	285, 343
PspPI	GGNCC	3 cut(s)	186, 284, 439
PspPPI	RGGWCCY	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	80
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
RseI	CAYNNNNRTG	3 cut(s)	110, 323, 457
SaqAI	TTAA	2 cut(s)	77, 306
SatI	GCNGC	3 cut(s)	15, 216, 390
Sau3AI	GATC	1 cut(s)	80
Sau96I	GGNCC	3 cut(s)	186, 284, 439
SchI	GAGTC	1 cut(s)	189
ScrFI	CCNGG	1 cut(s)	338
SetI	ASST	5 cut(s)	37, 99, 289, 372, 391
SinI	GGWCC	3 cut(s)	186, 284, 439
SmiMI	CAYNNNNRTG	3 cut(s)	110, 323, 457
SmlI	CTYRAG	2 cut(s)	76, 371
SmoI	CTYRAG	2 cut(s)	76, 371
Sse9I	AATT	3 cut(s)	69, 194, 362
StyD4I	CCNGG	1 cut(s)	336
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	2 cut(s)	322, 459
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	1 cut(s)	43
TasI	AATT	3 cut(s)	69, 194, 362
TfiI	GAWTC	1 cut(s)	45
Tru1I	TTAA	2 cut(s)	77, 306
Tru9I	TTAA	2 cut(s)	77, 306
TscAI	CASTG	1 cut(s)	464
TseI	GCWGC	3 cut(s)	14, 215, 389
TspRI	CASTG	1 cut(s)	464
Vha464I	CTTAAG	1 cut(s)	76
VpaK11BI	GGWCC	3 cut(s)	186, 284, 439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.