Rorug01G0327100

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
44647465 .. 44664059
16595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0327100.1

Sequence Viewer

Length: 1059 bp
ATGGTGAATTGCTATGGACAATGGAAGCCAGTGGTTGCCATGATTGGCATCAACCTTGCTTTGGCCATAGTCAACGTGCTTCTTAAGTTAACTCTGGATAAAGGAGTGCACAATTTGGTTGTAGTTACTTATAGACAGTCAATTTCTTGTGTCCTCTTGACACCCATTGCCTTCTTTTGGGAAAGAAAAAGTAGACATGAACTTACAGCTCCACTCATATGCCACCTTTTTTTCAGTGCTCTAATTGGGGTAACATTCGCACAATACATGTTTCTTCTTGGACTCCAGTACACCTCAGCTACATATTCTTCTGCCTTCATCAACATGGTGCCTGTTAACACTTACCTGTTGGCACTACCATTTGGTCTAGAGAAAGTAAACATTAAGAGCAAGGGAGGCAGAGCAAAGATCTTGGGTGCTCTGATATGTATTGGTGGAGCTTTGTCACTGACATTATACAAAGGAACGCCACTAACCAATCAACATTCCCATGCCACATCTCAAAACGAAGACCATGATTATATGAGGAGAGCAGCAAAGGATAAAGAGAAGTGGGCAGTTGGTTCCCTGCTTTTAGCAGCAGGTTGCTTCTTGTGGGCTTCATGGTTTCTCATACAAGCCAAGATTGGCAAGAGCTACCCATTTCAGTACTCTAGCACAGCTATCTTGTCCTTCTTCGGTGCCATTCAATCAGCCATCTTGAGCTTGGTTACCGAGAGAGACATGAACATGTCAATGTGGGTTTTGAAGGGGAAGTTGGAGATATTAGGTGTCCTATATGCTGGAGCAATTGGATCTGGGTTGTGCTATGTAGGGATGTCATGGTGTGTGAAACAAAAGGGTCCATTGTTTACAGCAGCATTTACCCCCTTAACCCAGATTTTTGTGGCTATGTTTGACTTCTCAACCTTGAAAGAACAAATCTATCTTGGAAGTGTGGTGGGATCTGTCCTAGTCATAGTGGGAATGTATGTTGTACTGTGGGGGAAAAGCAATGATGCAAAGGAAACTGTGATGAAGCAGACACAAGCAGCTGAAGAAGGTGCGGATGTCCCTTGA

Protein Analysis

352

Amino Acids

38.62

Weight (kDa)

9.18

Isoelectric Point (pI)

28.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 11 - 147 4.7e-11 EamA-like transporter family
EamA PF00892 188 - 327 1.5e-11 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000617)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39510
fragaria_vesca FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 572
AccB1I GGYRCC 2 cut(s) 328, 680
AccI GTMKAC 1 cut(s) 193
AciI CCGC 1 cut(s) 1046
AclWI GGATC 2 cut(s) 802, 952
AcoI YGGCCR 1 cut(s) 63
AcuI CTGAAG 1 cut(s) 1056
AfaI GTAC 3 cut(s) 290, 650, 978
AfiI CCNNNNNNNGG 2 cut(s) 61, 177
AflII CTTAAG 1 cut(s) 83
AflIII ACRYGT 2 cut(s) 267, 729
AgsI TTSAA 3 cut(s) 689, 748, 913
AjuI GAANNNNNNNTTGG 2 cut(s) 740, 772
AluBI AGCT 7 cut(s) 209, 299, 440, 636, 662, 705, 1034
AluI AGCT 7 cut(s) 209, 299, 440, 636, 662, 705, 1034
Alw21I GWGCWC 3 cut(s) 111, 241, 421
Alw26I GTCTC 1 cut(s) 714
Alw44I GTGCAC 1 cut(s) 107
AlwI GGATC 2 cut(s) 802, 952
AoxI GGCC 1 cut(s) 63
ApaLI GTGCAC 1 cut(s) 107
ApeKI GCWGC 4 cut(s) 533, 578, 857, 1031
AspS9I GGNCC 1 cut(s) 842
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 842
BaeGI GKGCMC 1 cut(s) 111
BalI TGGCCA 1 cut(s) 65
BanI GGYRCC 2 cut(s) 328, 680
BbsI GAAGAC 1 cut(s) 516
Bbv12I GWGCWC 3 cut(s) 111, 241, 421
BbvCI CCTCAGC 1 cut(s) 295
BbvI GCAGC 4 cut(s) 545, 590, 869, 1043
BccI CCATC 1 cut(s) 704
BcoDI GTCTC 1 cut(s) 714
BfaI CTAG 3 cut(s) 368, 654, 953
BfrI CTTAAG 1 cut(s) 83
BfuAI ACCTGC 1 cut(s) 572
BglII AGATCT 1 cut(s) 408
BisI GCNGC 4 cut(s) 534, 579, 858, 1032
BlsI GCNGC 4 cut(s) 535, 580, 859, 1033
BmcAI AGTACT 1 cut(s) 650
Bme18I GGWCC 1 cut(s) 842
BmgT120I GGNCC 1 cut(s) 842
BmiI GGNNCC 4 cut(s) 330, 565, 682, 843
BmsI GCATC 2 cut(s) 57, 988
BpiI GAAGAC 1 cut(s) 516
BpmI CTGGAG 2 cut(s) 269, 804
Bpu10I CCTNAGC 1 cut(s) 295
BpuEI CTTGAG 1 cut(s) 721
BsaBI GATNNNNATC 1 cut(s) 47
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 177
Bse1I ACTGG 2 cut(s) 29, 286
Bse3DI GCAATG 2 cut(s) 165, 1000
Bse8I GATNNNNATC 1 cut(s) 47
BseGI GGATG 2 cut(s) 822, 1054
BseJI GATNNNNATC 1 cut(s) 47
BseLI CCNNNNNNNGG 2 cut(s) 61, 177
BseMI GCAATG 2 cut(s) 165, 1000
BseMII CTCAG 1 cut(s) 309
BseNI ACTGG 2 cut(s) 29, 286
BseRI GAGGAG 1 cut(s) 541
BseSI GKGCMC 1 cut(s) 111
BseXI GCAGC 4 cut(s) 545, 590, 869, 1043
BshFI GGCC 1 cut(s) 65
BshNI GGYRCC 2 cut(s) 328, 680
BsiHKAI GWGCWC 3 cut(s) 111, 241, 421
BslFI GGGAC 1 cut(s) 1037
BslI CCNNNNNNNGG 2 cut(s) 61, 177
BsmAI GTCTC 1 cut(s) 714
BsmFI GGGAC 1 cut(s) 1037
BsnI GGCC 1 cut(s) 65
Bsp1286I GDGCHC 3 cut(s) 111, 241, 421
Bsp143I GATC 3 cut(s) 408, 794, 944
BspACI CCGC 1 cut(s) 1046
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 308
BspLI GGNNCC 4 cut(s) 330, 565, 682, 843
BspMI ACCTGC 1 cut(s) 572
BspPI GGATC 2 cut(s) 802, 952
BspT107I GGYRCC 2 cut(s) 328, 680
BspTI CTTAAG 1 cut(s) 83
BsrDI GCAATG 2 cut(s) 165, 1000
BsrI ACTGG 2 cut(s) 29, 286
BssMI GATC 3 cut(s) 408, 794, 944
Bst4CI ACNGT 3 cut(s) 138, 981, 1012
BstAFI CTTAAG 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 295
BstEII GGTNACC 1 cut(s) 709
BstF5I GGATG 2 cut(s) 822, 1054
BstKTI GATC 3 cut(s) 411, 797, 947
BstMAI GTCTC 1 cut(s) 714
BstMBI GATC 3 cut(s) 408, 794, 944
BstMWI GCNNNNNNNGC 1 cut(s) 396
BstNSI RCATGY 2 cut(s) 271, 733
BstPI GGTNACC 1 cut(s) 709
BstSLI GKGCMC 1 cut(s) 111
BstV1I GCAGC 4 cut(s) 545, 590, 869, 1043
BstV2I GAAGAC 1 cut(s) 516
BstX2I RGATCY 3 cut(s) 408, 794, 944
BstYI RGATCY 3 cut(s) 408, 794, 944
BsuRI GGCC 1 cut(s) 65
BtsCI GGATG 2 cut(s) 822, 1054
BtsIMutI CAGTG 3 cut(s) 36, 241, 446
BveI ACCTGC 1 cut(s) 572
Cfr13I GGNCC 1 cut(s) 842
Csp6I GTAC 3 cut(s) 289, 649, 977
CviQI GTAC 3 cut(s) 289, 649, 977
DdeI CTNAG 1 cut(s) 295
DpnI GATC 3 cut(s) 410, 796, 946
DpnII GATC 3 cut(s) 408, 794, 944
EaeI YGGCCR 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 842
Eco57I CTGAAG 1 cut(s) 1056
Eco91I GGTNACC 1 cut(s) 709
EcoO65I GGTNACC 1 cut(s) 709
FaqI GGGAC 1 cut(s) 1037
FauNDI CATATG 1 cut(s) 218
FblI GTMKAC 1 cut(s) 193
Fnu4HI GCNGC 4 cut(s) 534, 579, 858, 1032
FokI GGATG 1 cut(s) 829
Fsp4HI GCNGC 4 cut(s) 534, 579, 858, 1032
FspBI CTAG 3 cut(s) 368, 654, 953
GluI GCNGC 4 cut(s) 534, 579, 858, 1032
GsuI CTGGAG 2 cut(s) 269, 804
HaeIII GGCC 1 cut(s) 65
HincII GTYRAC 3 cut(s) 73, 90, 337
HindII GTYRAC 3 cut(s) 73, 90, 337
HinfI GANTC 1 cut(s) 282
HpaI GTTAAC 2 cut(s) 90, 337
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 8 cut(s) 73, 90, 109, 194, 291, 337, 379, 852
Hpy188I TCNGA 1 cut(s) 423
Hpy188III TCNNGA 4 cut(s) 95, 157, 368, 700
Hpy8I GTNNAC 8 cut(s) 73, 90, 109, 194, 291, 337, 379, 852
HpyAV CCTTC 5 cut(s) 181, 325, 682, 742, 1034
HpyCH4III ACNGT 3 cut(s) 138, 981, 1012
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 2 cut(s) 109, 1001
HpyF10VI GCNNNNNNNGC 1 cut(s) 396
HpyF3I CTNAG 1 cut(s) 295
HpySE526I ACGT 1 cut(s) 75
KspAI GTTAAC 2 cut(s) 90, 337
Kzo9I GATC 3 cut(s) 408, 794, 944
LmnI GCTCC 3 cut(s) 214, 437, 785
Lsp1109I GCAGC 4 cut(s) 545, 590, 869, 1043
LweI GCATC 2 cut(s) 57, 988
MaeI CTAG 3 cut(s) 368, 654, 953
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 4 cut(s) 124, 250, 444, 709
MalI GATC 3 cut(s) 410, 796, 946
MboI GATC 3 cut(s) 408, 794, 944
MboII GAAGA 5 cut(s) 266, 300, 521, 667, 1049
MfeI CAATTG 1 cut(s) 789
MflI RGATCY 3 cut(s) 408, 794, 944
MhlI GDGCHC 3 cut(s) 111, 241, 421
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 5 cut(s) 7, 112, 141, 243, 789
MluNI TGGCCA 1 cut(s) 65
MlyI GAGTC 1 cut(s) 276
MmeI TCCRAC 1 cut(s) 738
MnlI CCTC 4 cut(s) 164, 304, 389, 519
Mox20I TGGCCA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 65
MseI TTAA 5 cut(s) 84, 89, 336, 384, 872
MslI CAYNNNNRTG 5 cut(s) 217, 323, 489, 728, 734
Msp20I TGGCCA 1 cut(s) 65
MspA1I CMGCKG 1 cut(s) 1034
MspCI CTTAAG 1 cut(s) 83
MunI CAATTG 1 cut(s) 789
MwoI GCNNNNNNNGC 1 cut(s) 396
NdeI CATATG 1 cut(s) 218
NdeII GATC 3 cut(s) 408, 794, 944
NlaIV GGNNCC 4 cut(s) 330, 565, 682, 843
NmuCI GTSAC 1 cut(s) 444
NspI RCATGY 2 cut(s) 271, 733
PciI ACATGT 2 cut(s) 267, 729
PkrI GCNGC 4 cut(s) 535, 580, 859, 1033
PleI GAGTC 1 cut(s) 276
PpsI GAGTC 1 cut(s) 276
PscI ACATGT 2 cut(s) 267, 729
PspEI GGTNACC 1 cut(s) 709
PspN4I GGNNCC 4 cut(s) 330, 565, 682, 843
PspPI GGNCC 1 cut(s) 842
PsuI RGATCY 3 cut(s) 408, 794, 944
PvuII CAGCTG 1 cut(s) 1034
RsaI GTAC 3 cut(s) 290, 650, 978
RsaNI GTAC 3 cut(s) 289, 649, 977
RseI CAYNNNNRTG 5 cut(s) 217, 323, 489, 728, 734
SaqAI TTAA 5 cut(s) 84, 89, 336, 384, 872
SatI GCNGC 4 cut(s) 534, 579, 858, 1032
Sau3AI GATC 3 cut(s) 408, 794, 944
Sau96I GGNCC 1 cut(s) 842
ScaI AGTACT 1 cut(s) 650
SchI GAGTC 1 cut(s) 276
SduI GDGCHC 3 cut(s) 111, 241, 421
SfaNI GCATC 2 cut(s) 57, 988
SinI GGWCC 1 cut(s) 842
SmiMI CAYNNNNRTG 5 cut(s) 217, 323, 489, 728, 734
SmlI CTYRAG 2 cut(s) 83, 700
SmoI CTYRAG 2 cut(s) 83, 700
Sse9I AATT 5 cut(s) 7, 112, 141, 243, 789
SsiI CCGC 1 cut(s) 1046
SspMI CTAG 3 cut(s) 368, 654, 953
TaaI ACNGT 3 cut(s) 138, 981, 1012
TaiI ACGT 1 cut(s) 78
TasI AATT 5 cut(s) 7, 112, 141, 243, 789
TatI WGTACW 3 cut(s) 288, 648, 976
Tru1I TTAA 5 cut(s) 84, 89, 336, 384, 872
Tru9I TTAA 5 cut(s) 84, 89, 336, 384, 872
TscAI CASTG 3 cut(s) 36, 241, 453
TseFI GTSAC 1 cut(s) 444
TseI GCWGC 4 cut(s) 533, 578, 857, 1031
Tsp45I GTSAC 1 cut(s) 444
TspDTI ATGAA 5 cut(s) 213, 307, 591, 740, 1031
TspRI CASTG 3 cut(s) 36, 241, 453
Vha464I CTTAAG 1 cut(s) 83
VneI GTGCAC 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 842
XbaI TCTAGA 1 cut(s) 367
XceI RCATGY 2 cut(s) 271, 733
XcmI CCANNNNNNNNNTGG 1 cut(s) 703
XmiI GTMKAC 1 cut(s) 193
XspI CTAG 3 cut(s) 368, 654, 953
ZrmI AGTACT 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.