Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Reverse (-)

20083529 .. 20084881

Gene Structure 1353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG117400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGACTTGGTCCATCACTGCAAAGATAATGTTGCTGAGCCTTTTCGATCCTGTGCTTGACCAGAACCTCTACTACATGGGAATGAAGAATTCGAGTGCAACGTTCACTTCTGCAATGTTGAATATGCTGCCTGCTTTTGCATTTTGTCTAGCCTGGATTTTTAGGTTTGAGAAGGTTAGCCTTAAGAAACTGCACAGCATAGCAAAGGTGATGGGGACGGTCATCACAGTCGGGGAGCAAGTCTTGACTGTAGTTAAAGCAATGACATGCTTTTGGGGTATGGTGGATGGCGCAATACTGGCTTTTGTAGTTGAAAGGGGACATGGTGGAGTCTGGTCCATACAATTCAACATCGAACTTGTAGCAGCATTTTATGGGATAGGCAGTGCAATCTGGTGTTGCTTATTATGTGATGGGAATGGTAGTGAAGGAAAAGGGACCTGTTTTTCACTCGGCTTTTCATCCCTTGGCCACATGTTATCGGAGCAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

164

Amino Acids

17.93

Weight (kDa)

6.8

Isoelectric Point (pI)

24.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	7 - 75	1e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	101
AclWI	GGATC	1 cut(s)	41
AcoI	YGGCCR	1 cut(s)	469
AcsI	RAATTY	1 cut(s)	88
AflII	CTTAAG	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	474
AgsI	TTSAA	3 cut(s)	121, 314, 349
AjnI	CCWGG	1 cut(s)	152
AluBI	AGCT	1 cut(s)	490
AluI	AGCT	1 cut(s)	490
AlwI	GGATC	1 cut(s)	41
AoxI	GGCC	1 cut(s)	469
ApeKI	GCWGC	3 cut(s)	127, 365, 487
ApoI	RAATTY	1 cut(s)	88
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	3 cut(s)	9, 336, 438
AsuHPI	GGTGA	1 cut(s)	220
AvaII	GGWCC	3 cut(s)	9, 336, 438
BalI	TGGCCA	1 cut(s)	471
BbvI	GCAGC	2 cut(s)	114, 377
BccI	CCATC	4 cut(s)	20, 205, 281, 407
BciT130I	CCWGG	1 cut(s)	154
BfaI	CTAG	1 cut(s)	149
BfmI	CTRYAG	1 cut(s)	249
BfrI	CTTAAG	1 cut(s)	182
BisI	GCNGC	3 cut(s)	128, 366, 488
BlpI	GCTNAGC	1 cut(s)	35
BlsI	GCNGC	3 cut(s)	129, 367, 489
Bme1390I	CCNGG	1 cut(s)	154
Bme18I	GGWCC	3 cut(s)	9, 336, 438
BmgT120I	GGNCC	3 cut(s)	9, 336, 438
BmiI	GGNNCC	1 cut(s)	439
BmrFI	CCNGG	1 cut(s)	154
Bpu1102I	GCTNAGC	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	466
Bse1I	ACTGG	1 cut(s)	303
Bse3DI	GCAATG	2 cut(s)	120, 267
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	1 cut(s)	466
BseGI	GGATG	2 cut(s)	292, 461
BseMI	GCAATG	2 cut(s)	120, 267
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	303
BseXI	GCAGC	2 cut(s)	114, 377
BsgI	GTGCAG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	471
BslFI	GGGAC	3 cut(s)	229, 333, 451
BsmFI	GGGAC	3 cut(s)	229, 333, 451
BsnI	GGCC	1 cut(s)	471
Bsp143I	GATC	1 cut(s)	46
Bsp1720I	GCTNAGC	1 cut(s)	35
BspANI	GGCC	1 cut(s)	471
BspCNI	CTCAG	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	439
BspPI	GGATC	1 cut(s)	41
BspTI	CTTAAG	1 cut(s)	182
BsrDI	GCAATG	2 cut(s)	120, 267
BsrI	ACTGG	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	466
BssMI	GATC	1 cut(s)	46
BssT1I	CCWWGG	1 cut(s)	466
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	3 cut(s)	220, 229, 250
BstAFI	CTTAAG	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	35
BstF5I	GGATG	2 cut(s)	292, 461
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	46
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstNI	CCWGG	1 cut(s)	154
BstNSI	RCATGY	2 cut(s)	270, 478
BstSCI	CCNGG	1 cut(s)	152
BstSFI	CTRYAG	1 cut(s)	249
BstV1I	GCAGC	2 cut(s)	114, 377
BsuRI	GGCC	1 cut(s)	471
BtsCI	GGATG	2 cut(s)	292, 461
BtsI	GCAGTG	2 cut(s)	15, 391
BtsIMutI	CAGTG	2 cut(s)	15, 391
Cac8I	GCNNGC	1 cut(s)	132
CfoI	GCGC	1 cut(s)	293
Cfr13I	GGNCC	3 cut(s)	9, 336, 438
CviAII	CATG	4 cut(s)	76, 267, 323, 475
CviJI	RGCY	7 cut(s)	39, 152, 180, 302, 456, 471, 490
CviKI_1	RGCY	7 cut(s)	39, 152, 180, 302, 456, 471, 490
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	469
Eco130I	CCWWGG	1 cut(s)	466
Eco47I	GGWCC	3 cut(s)	9, 336, 438
EcoO109I	RGGNCCY	1 cut(s)	438
EcoRI	GAATTC	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	466
ErhI	CCWWGG	1 cut(s)	466
FaeI	CATG	4 cut(s)	79, 270, 326, 478
FaqI	GGGAC	3 cut(s)	229, 333, 451
FatI	CATG	4 cut(s)	75, 266, 322, 474
Fnu4HI	GCNGC	3 cut(s)	128, 366, 488
FokI	GGATG	2 cut(s)	299, 448
Fsp4HI	GCNGC	3 cut(s)	128, 366, 488
FspBI	CTAG	1 cut(s)	149
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	3 cut(s)	128, 366, 488
HaeIII	GGCC	1 cut(s)	471
HhaI	GCGC	1 cut(s)	293
Hin1II	CATG	4 cut(s)	79, 270, 326, 478
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HinfI	GANTC	1 cut(s)	330
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188I	TCNGA	1 cut(s)	484
Hpy188III	TCNNGA	1 cut(s)	244
Hpy8I	GTNNAC	1 cut(s)	105
HpyAV	CCTTC	2 cut(s)	166, 422
HpyCH4III	ACNGT	3 cut(s)	220, 229, 250
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	6 cut(s)	20, 98, 113, 140, 193, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	1 cut(s)	35
HpySE526I	ACGT	1 cut(s)	101
Hsp92II	CATG	4 cut(s)	79, 270, 326, 478
HspAI	GCGC	1 cut(s)	291
Kzo9I	GATC	1 cut(s)	46
LmnI	GCTCC	2 cut(s)	235, 484
LpnPI	CCDG	9 cut(s)	63, 74, 139, 144, 166, 284, 319, 379, 454
Lsp1109I	GCAGC	2 cut(s)	114, 377
MaeI	CTAG	1 cut(s)	149
MaeII	ACGT	1 cut(s)	101
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	1 cut(s)	97
MlsI	TGGCCA	1 cut(s)	471
MluCI	AATT	2 cut(s)	88, 344
MluNI	TGGCCA	1 cut(s)	471
MlyI	GAGTC	1 cut(s)	339
MnlI	CCTC	1 cut(s)	77
Mox20I	TGGCCA	1 cut(s)	471
MscI	TGGCCA	1 cut(s)	471
MseI	TTAA	3 cut(s)	183, 255, 493
MslI	CAYNNNNRTG	1 cut(s)	80
Msp20I	TGGCCA	1 cut(s)	471
MspCI	CTTAAG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	154
MvaI	CCWGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	1 cut(s)	299
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	4 cut(s)	79, 270, 326, 478
NlaIV	GGNNCC	1 cut(s)	439
NmeAIII	GCCGAG	1 cut(s)	432
NspI	RCATGY	2 cut(s)	270, 478
PciI	ACATGT	1 cut(s)	474
PcsI	WCGNNNNNNNCGW	1 cut(s)	98
PflFI	GACNNNGTC	1 cut(s)	7
PkrI	GCNGC	3 cut(s)	129, 367, 489
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
PpuMI	RGGWCCY	1 cut(s)	438
PscI	ACATGT	1 cut(s)	474
Psp1406I	AACGTT	1 cut(s)	101
Psp5II	RGGWCCY	1 cut(s)	438
Psp6I	CCWGG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	439
PspPI	GGNCC	3 cut(s)	9, 336, 438
PspPPI	RGGWCCY	1 cut(s)	438
PsrI	GAACNNNNNNTAC	2 cut(s)	56, 88
PsyI	GACNNNGTC	1 cut(s)	7
RseI	CAYNNNNRTG	1 cut(s)	80
SaqAI	TTAA	3 cut(s)	183, 255, 493
SatI	GCNGC	3 cut(s)	128, 366, 488
Sau3AI	GATC	1 cut(s)	46
Sau96I	GGNCC	3 cut(s)	9, 336, 438
SchI	GAGTC	1 cut(s)	339
ScrFI	CCNGG	1 cut(s)	154
SetI	ASST	7 cut(s)	69, 104, 167, 177, 210, 443, 492
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	3 cut(s)	9, 336, 438
SmiMI	CAYNNNNRTG	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	2 cut(s)	88, 344
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	152
StyI	CCWWGG	1 cut(s)	466
TaaI	ACNGT	3 cut(s)	220, 229, 250
TaiI	ACGT	1 cut(s)	104
TaqI	TCGA	3 cut(s)	45, 92, 354
TasI	AATT	2 cut(s)	88, 344
Tru1I	TTAA	3 cut(s)	183, 255, 493
Tru9I	TTAA	3 cut(s)	183, 255, 493
TscAI	CASTG	2 cut(s)	22, 391
TseI	GCWGC	3 cut(s)	127, 365, 487
TspDTI	ATGAA	2 cut(s)	98, 450
TspRI	CASTG	2 cut(s)	22, 391
Tth111I	GACNNNGTC	1 cut(s)	7
Vha464I	CTTAAG	1 cut(s)	182
VpaK11BI	GGWCC	3 cut(s)	9, 336, 438
XapI	RAATTY	1 cut(s)	88
XceI	RCATGY	2 cut(s)	270, 478
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.