RchiOBHm_Chr2g0101901

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
13333185 .. 13334814
1630 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47641

Sequence Viewer

Length: 1026 bp
ATGTTTATGGGGTTGATCCGCCGGGCAAAACTTGTGTTAGCTGTGATTTTGGTGCAGCTCGGGTATGCTGGGCTTTCGATAATCTCAATGTTTGCTCTAAAGAAGGGAATGAGTCCTTACACATTCATCGTGTACCGAATGGCCATTGCCACTATTGTTCTAACTCCATTTGCATTCATTTTGGAGAGGAATTCAAGACCTCAGATGACTTGGTCCATCACTGCAAAGATAATGTTGCTGAGCCTTTTCGACCCTGTGCTTGACCAGAACCTGTACTACATGGGAATGAAGAATTCGAGTGCAACGTTCACTTCTGCAATGTGCAATATGCTGCCTGCTTTTGCATTTTGTCTAGCCTGGATTTTTAGGTTTGAGAAGGTTAGCCTTAAGAAACTGCACAGCATAGCAAAGGTGATGGGGACGGTCATCACAGTCGGGGGAGCAACTATCTTGACTCTAGTTAGAGGTCCCTCTTTGTGTCTACCATGGGCCAATGAAGAAGAAATAAATCCTCAACAATCTGCGCAATACTATTCGGGTCAGAGAGACCTTGTGAAGGGAGCTCTATTTATCTCAGGAGCTTGCTTCTGCTGGTCTTGGTTTGTCATTTTGCAAGCAATTATCTTAAGATCCTACCCTTGTCAGCTCTCTCTCACAGCAATGATATGCTTTTGGGGTATGGTGGAAGGAGCAATACTGGCTTTTGTAGTTGAAAGGGGACATAGTGGAGTTTGGTCCATACAATTCAACATCAAACTTGTAGCAGCATTTTATGGGGCAATGCAATCTGTTGTTGCTTATTATGTGATGGGAATGGTAGTGAAGGAAAAGGGACCTGTTTTTTACTCGGCTTTTAATCCCGTGGCCACAGTAATGGTTGCAATCCTGGGTTCCTTTGTTTTAGCAGAACAATTGTACCTTGGGAGTGTTATCGGAGTTGCTGTAATCATCATTGGTCTGTATCTCATTCTCTGGGGAAAAGCAAAGGACCAGTCTCCTCCATCACAGTGCCTGAATTATCGATGA

Protein Analysis

341

Amino Acids

37.8

Weight (kDa)

9.42

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 12 - 143 1.6e-15 EamA-like transporter family
EamA PF00892 186 - 324 3.9e-09 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000617)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39510
fragaria_vesca FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 525
AccI GTMKAC 1 cut(s) 481
AciI CCGC 1 cut(s) 19
AclI AACGTT 1 cut(s) 305
AclWI GGATC 2 cut(s) 10, 624
AcoI YGGCCR 2 cut(s) 141, 864
AcsI RAATTY 2 cut(s) 190, 292
AfaI GTAC 3 cut(s) 134, 275, 917
AfiI CCNNNNNNNGG 1 cut(s) 556
AflII CTTAAG 2 cut(s) 386, 625
AgsI TTSAA 3 cut(s) 195, 713, 748
AjnI CCWGG 2 cut(s) 356, 885
AluBI AGCT 5 cut(s) 41, 58, 563, 581, 646
AluI AGCT 5 cut(s) 41, 58, 563, 581, 646
Alw21I GWGCWC 1 cut(s) 565
Alw26I GTCTC 2 cut(s) 540, 999
AlwI GGATC 2 cut(s) 10, 624
AlwNI CAGNNNCTG 2 cut(s) 271, 1012
Ama87I CYCGRG 1 cut(s) 59
AoxI GGCC 3 cut(s) 141, 489, 864
ApeKI GCWGC 3 cut(s) 55, 331, 764
ApoI RAATTY 2 cut(s) 190, 292
ArsI GACNNNNNNTTYG 2 cut(s) 977, 1009
AspLEI GCGC 1 cut(s) 526
AspS9I GGNCC 6 cut(s) 213, 467, 489, 735, 833, 988
AsuC2I CCSGG 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 424
AvaI CYCGRG 1 cut(s) 59
AvaII GGWCC 5 cut(s) 213, 467, 735, 833, 988
BaeI ACNNNNGTAYC 2 cut(s) 899, 932
BalI TGGCCA 2 cut(s) 143, 866
BanII GRGCYC 1 cut(s) 565
BarI GAAGNNNNNNTAC 2 cut(s) 678, 710
Bbv12I GWGCWC 1 cut(s) 565
BbvI GCAGC 3 cut(s) 67, 318, 776
BccI CCATC 4 cut(s) 224, 409, 802, 1009
BciT130I CCWGG 2 cut(s) 358, 887
BcnI CCSGG 1 cut(s) 23
BcoDI GTCTC 2 cut(s) 540, 999
BfaI CTAG 2 cut(s) 353, 458
BfrI CTTAAG 2 cut(s) 386, 625
BisI GCNGC 3 cut(s) 56, 332, 765
BlpI GCTNAGC 1 cut(s) 239
BlsI GCNGC 3 cut(s) 57, 333, 766
Bme1390I CCNGG 3 cut(s) 23, 358, 887
Bme18I GGWCC 5 cut(s) 213, 467, 735, 833, 988
BmeT110I CYCGRG 1 cut(s) 59
BmgT120I GGNCC 6 cut(s) 213, 467, 489, 735, 833, 988
BmiI GGNNCC 3 cut(s) 469, 834, 892
BmrFI CCNGG 3 cut(s) 23, 358, 887
Bpu1102I GCTNAGC 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 23
Bsa29I ATCGAT 1 cut(s) 1021
BsaI GGTCTC 1 cut(s) 540
BsaJI CCNNGG 4 cut(s) 485, 861, 886, 919
BsaXI ACNNNNNCTCC 2 cut(s) 927, 957
Bsc4I CCNNNNNNNGG 1 cut(s) 556
Bse1I ACTGG 2 cut(s) 702, 991
Bse3DI GCAATG 4 cut(s) 144, 324, 666, 786
BseBI CCWGG 2 cut(s) 358, 887
BseCI ATCGAT 1 cut(s) 1021
BseDI CCNNGG 4 cut(s) 485, 861, 886, 919
BseLI CCNNNNNNNGG 1 cut(s) 556
BseMI GCAATG 4 cut(s) 144, 324, 666, 786
BseMII CTCAG 3 cut(s) 215, 230, 588
BseNI ACTGG 2 cut(s) 702, 991
BseRI GAGGAG 1 cut(s) 987
BseXI GCAGC 3 cut(s) 67, 318, 776
BseYI CCCAGC 1 cut(s) 68
BsgI GTGCAG 2 cut(s) 74, 380
BshFI GGCC 3 cut(s) 143, 491, 866
BshVI ATCGAT 1 cut(s) 1021
BsiHKAI GWGCWC 1 cut(s) 565
BsiHKCI CYCGRG 1 cut(s) 59
BsiSI CCGG 1 cut(s) 22
BslFI GGGAC 4 cut(s) 433, 453, 732, 846
BslI CCNNNNNNNGG 1 cut(s) 556
BsmAI GTCTC 2 cut(s) 540, 999
BsmFI GGGAC 4 cut(s) 433, 453, 732, 846
BsmI GAATGC 1 cut(s) 173
BsnI GGCC 3 cut(s) 143, 491, 866
Bso31I GGTCTC 1 cut(s) 540
BsoBI CYCGRG 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 565
Bsp143I GATC 2 cut(s) 15, 629
Bsp1720I GCTNAGC 1 cut(s) 239
Bsp19I CCATGG 1 cut(s) 485
BspACI CCGC 1 cut(s) 19
BspANI GGCC 3 cut(s) 143, 491, 866
BspCNI CTCAG 3 cut(s) 214, 231, 587
BspDI ATCGAT 1 cut(s) 1021
BspLI GGNNCC 3 cut(s) 469, 834, 892
BspPI GGATC 2 cut(s) 10, 624
BspTI CTTAAG 2 cut(s) 386, 625
BspTNI GGTCTC 1 cut(s) 540
BsrDI GCAATG 4 cut(s) 144, 324, 666, 786
BsrI ACTGG 2 cut(s) 702, 991
BssECI CCNNGG 4 cut(s) 485, 861, 886, 919
BssMI GATC 2 cut(s) 15, 629
BssT1I CCWWGG 2 cut(s) 485, 919
Bst2UI CCWGG 2 cut(s) 358, 887
Bst4CI ACNGT 4 cut(s) 424, 433, 871, 1008
BstAFI CTTAAG 2 cut(s) 386, 625
BstC8I GCNNGC 3 cut(s) 336, 583, 615
BstDEI CTNAG 3 cut(s) 201, 239, 574
BstDSI CCRYGG 2 cut(s) 485, 861
BstENI CCTNNNNNAGG 1 cut(s) 554
BstHHI GCGC 1 cut(s) 526
BstKTI GATC 2 cut(s) 18, 632
BstMAI GTCTC 2 cut(s) 540, 999
BstMBI GATC 2 cut(s) 15, 629
BstMWI GCNNNNNNNGC 1 cut(s) 698
BstNI CCWGG 2 cut(s) 358, 887
BstSCI CCNGG 3 cut(s) 21, 356, 885
BstV1I GCAGC 3 cut(s) 67, 318, 776
BstX2I RGATCY 1 cut(s) 629
BstXI CCANNNNNNTGG 1 cut(s) 874
BstYI RGATCY 1 cut(s) 629
Bsu15I ATCGAT 1 cut(s) 1021
BsuRI GGCC 3 cut(s) 143, 491, 866
BsuTUI ATCGAT 1 cut(s) 1021
BtgI CCRYGG 2 cut(s) 485, 861
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 2 cut(s) 219, 1013
Cac8I GCNNGC 3 cut(s) 336, 583, 615
CaiI CAGNNNCTG 2 cut(s) 271, 1012
CfoI GCGC 1 cut(s) 526
Cfr13I GGNCC 6 cut(s) 213, 467, 489, 735, 833, 988
ClaI ATCGAT 1 cut(s) 1021
Csp6I GTAC 3 cut(s) 133, 274, 916
CviAII CATG 2 cut(s) 280, 486
CviQI GTAC 3 cut(s) 133, 274, 916
DdeI CTNAG 3 cut(s) 201, 239, 574
DpnI GATC 2 cut(s) 17, 631
DpnII GATC 2 cut(s) 15, 629
EaeI YGGCCR 2 cut(s) 141, 864
EciI GGCGGA 1 cut(s) 8
Ecl136II GAGCTC 1 cut(s) 563
Eco130I CCWWGG 2 cut(s) 485, 919
Eco24I GRGCYC 1 cut(s) 565
Eco31I GGTCTC 1 cut(s) 540
Eco47I GGWCC 5 cut(s) 213, 467, 735, 833, 988
Eco53kI GAGCTC 1 cut(s) 563
Eco88I CYCGRG 1 cut(s) 59
EcoICRI GAGCTC 1 cut(s) 563
EcoNI CCTNNNNNAGG 1 cut(s) 554
EcoO109I RGGNCCY 2 cut(s) 467, 833
EcoRI GAATTC 2 cut(s) 190, 292
EcoRII CCWGG 2 cut(s) 356, 885
EcoT14I CCWWGG 2 cut(s) 485, 919
EcoT38I GRGCYC 1 cut(s) 565
ErhI CCWWGG 2 cut(s) 485, 919
FaeI CATG 2 cut(s) 283, 489
FaqI GGGAC 4 cut(s) 433, 453, 732, 846
FatI CATG 2 cut(s) 279, 485
FblI GTMKAC 1 cut(s) 481
Fnu4HI GCNGC 3 cut(s) 56, 332, 765
FriOI GRGCYC 1 cut(s) 565
Fsp4HI GCNGC 3 cut(s) 56, 332, 765
FspBI CTAG 2 cut(s) 353, 458
FspI TGCGCA 1 cut(s) 525
GlaI GCGC 1 cut(s) 525
GluI GCNGC 3 cut(s) 56, 332, 765
GsaI CCCAGC 1 cut(s) 72
HaeIII GGCC 3 cut(s) 143, 491, 866
HapII CCGG 1 cut(s) 22
HhaI GCGC 1 cut(s) 526
Hin1II CATG 2 cut(s) 283, 489
Hin6I GCGC 1 cut(s) 524
HinP1I GCGC 1 cut(s) 524
HinfI GANTC 2 cut(s) 112, 454
HpaII CCGG 1 cut(s) 22
HphI GGTGA 1 cut(s) 424
Hpy166II GTNNAC 3 cut(s) 133, 309, 482
Hpy188I TCNGA 3 cut(s) 204, 543, 935
Hpy188III TCNNGA 3 cut(s) 195, 451, 576
Hpy8I GTNNAC 3 cut(s) 133, 309, 482
HpyAV CCTTC 5 cut(s) 97, 370, 550, 680, 817
HpyCH4III ACNGT 4 cut(s) 424, 433, 871, 1008
HpyCH4IV ACGT 1 cut(s) 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 698
HpyF3I CTNAG 3 cut(s) 201, 239, 574
HpySE526I ACGT 1 cut(s) 305
Hsp92II CATG 2 cut(s) 283, 489
HspAI GCGC 1 cut(s) 524
Kzo9I GATC 2 cut(s) 15, 629
LmnI GCTCC 4 cut(s) 440, 560, 578, 689
Lsp1109I GCAGC 3 cut(s) 67, 318, 776
MaeI CTAG 2 cut(s) 353, 458
MaeII ACGT 1 cut(s) 305
MalI GATC 2 cut(s) 17, 631
MboI GATC 2 cut(s) 15, 629
MboII GAAGA 3 cut(s) 301, 509, 512
MfeI CAATTG 1 cut(s) 911
MflI RGATCY 1 cut(s) 629
MhlI GDGCHC 1 cut(s) 565
MlsI TGGCCA 2 cut(s) 143, 866
MluCI AATT 6 cut(s) 190, 292, 618, 743, 911, 1015
MluNI TGGCCA 2 cut(s) 143, 866
MlyI GAGTC 2 cut(s) 121, 448
MnlI CCTC 6 cut(s) 180, 210, 458, 481, 522, 1008
Mox20I TGGCCA 2 cut(s) 143, 866
MscI TGGCCA 2 cut(s) 143, 866
MseI TTAA 3 cut(s) 387, 626, 855
MslI CAYNNNNRTG 4 cut(s) 284, 659, 872, 1006
Msp20I TGGCCA 2 cut(s) 143, 866
MspCI CTTAAG 2 cut(s) 386, 625
MspI CCGG 1 cut(s) 22
MspR9I CCNGG 3 cut(s) 23, 358, 887
MunI CAATTG 1 cut(s) 911
Mva1269I GAATGC 1 cut(s) 173
MvaI CCWGG 2 cut(s) 358, 887
MwoI GCNNNNNNNGC 1 cut(s) 698
NciI CCSGG 1 cut(s) 23
NcoI CCATGG 1 cut(s) 485
NdeII GATC 2 cut(s) 15, 629
NlaIII CATG 2 cut(s) 283, 489
NlaIV GGNNCC 3 cut(s) 469, 834, 892
NmeAIII GCCGAG 1 cut(s) 827
NsbI TGCGCA 1 cut(s) 525
PcsI WCGNNNNNNNCGW 1 cut(s) 302
PctI GAATGC 1 cut(s) 173
PflFI GACNNNGTC 1 cut(s) 211
PkrI GCNGC 3 cut(s) 57, 333, 766
PleI GAGTC 2 cut(s) 120, 448
PpsI GAGTC 2 cut(s) 120, 448
PpuMI RGGWCCY 2 cut(s) 467, 833
Psp124BI GAGCTC 1 cut(s) 565
Psp1406I AACGTT 1 cut(s) 305
Psp5II RGGWCCY 2 cut(s) 467, 833
Psp6I CCWGG 2 cut(s) 356, 885
PspFI CCCAGC 1 cut(s) 68
PspGI CCWGG 2 cut(s) 356, 885
PspN4I GGNNCC 3 cut(s) 469, 834, 892
PspPI GGNCC 6 cut(s) 213, 467, 489, 735, 833, 988
PspPPI RGGWCCY 2 cut(s) 467, 833
PsrI GAACNNNNNNTAC 2 cut(s) 260, 292
PstNI CAGNNNCTG 2 cut(s) 271, 1012
PsuI RGATCY 1 cut(s) 629
PsyI GACNNNGTC 1 cut(s) 211
RsaI GTAC 3 cut(s) 134, 275, 917
RsaNI GTAC 3 cut(s) 133, 274, 916
RseI CAYNNNNRTG 4 cut(s) 284, 659, 872, 1006
SacI GAGCTC 1 cut(s) 565
SaqAI TTAA 3 cut(s) 387, 626, 855
SatI GCNGC 3 cut(s) 56, 332, 765
Sau3AI GATC 2 cut(s) 15, 629
Sau96I GGNCC 6 cut(s) 213, 467, 489, 735, 833, 988
SchI GAGTC 2 cut(s) 121, 448
ScrFI CCNGG 3 cut(s) 23, 358, 887
SduI GDGCHC 1 cut(s) 565
SinI GGWCC 5 cut(s) 213, 467, 735, 833, 988
SmiMI CAYNNNNRTG 4 cut(s) 284, 659, 872, 1006
SmlI CTYRAG 2 cut(s) 386, 625
SmoI CTYRAG 2 cut(s) 386, 625
Sse9I AATT 6 cut(s) 190, 292, 618, 743, 911, 1015
SsiI CCGC 1 cut(s) 19
SspMI CTAG 2 cut(s) 353, 458
SstI GAGCTC 1 cut(s) 565
StyD4I CCNGG 3 cut(s) 21, 356, 885
StyI CCWWGG 2 cut(s) 485, 919
TaaI ACNGT 4 cut(s) 424, 433, 871, 1008
TaiI ACGT 1 cut(s) 308
TaqI TCGA 4 cut(s) 77, 249, 296, 1021
TasI AATT 6 cut(s) 190, 292, 618, 743, 911, 1015
TatI WGTACW 1 cut(s) 273
Tru1I TTAA 3 cut(s) 387, 626, 855
Tru9I TTAA 3 cut(s) 387, 626, 855
TscAI CASTG 2 cut(s) 226, 1013
TseI GCWGC 3 cut(s) 55, 331, 764
TspDTI ATGAA 4 cut(s) 115, 166, 302, 510
TspRI CASTG 2 cut(s) 226, 1013
Tth111I GACNNNGTC 1 cut(s) 211
Vha464I CTTAAG 2 cut(s) 386, 625
VpaK11BI GGWCC 5 cut(s) 213, 467, 735, 833, 988
XagI CCTNNNNNAGG 1 cut(s) 554
XapI RAATTY 2 cut(s) 190, 292
XmiI GTMKAC 1 cut(s) 481
XspI CTAG 2 cut(s) 353, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.