Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Reverse (-)

43194123 .. 43197321

Gene Structure 3199 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG296500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGTCAAGGGGCCTTCCCTCACCTTGCCATGGGCAAGGGACCACGAGAAAAATCATTCTTCACAGCCCAAAGTCAAGGGTGCTCTATTTCTAACACTAGCCTGTTTCTGCTGCTCTTGTTTCATGATCCTACAAGACAATGTACTCAAGTCCTACCCCTGCAAGCTCTCTCTCACCGCTTTGATTTGCTTCTGGGGTATGGTGGAAGGAGCAGTGGTGGCCGTTGTGGTTGAAAGGGGGGATTCGGAAGCATGGTCCATACACTTGGACTTCAAGTTGCTCGCAGCTGTTTATGGGGCTCTTCTATCGGGGGCTGCATATTATGTCATGGGACTGGTTGTGAAGAAGAAGGGTCCAGTTTTCTACTGGGCCTTTAACCCCTTGGCCACTCTGCTTGTGGCGATTTTGGGGCCTTTTTTTCTGGCAGAACAATTGCATACTGGGAGTCTCATCGGAGCTGTAACCATTGTGGGAGGCCTCTATCTTGTTCTTTGGGGAAAATCAAGAGATCAGCCTTCCTCCGATTCAAAGAATGCCAATGTGAAAGAACCAACTGGAACCCGCCAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

190

Amino Acids

20.61

Weight (kDa)

8.89

Isoelectric Point (pI)

25.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	26 - 164	3e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	177, 562
AclWI	GGATC	1 cut(s)	121
AcoI	YGGCCR	2 cut(s)	219, 384
AfaI	GTAC	1 cut(s)	144
AfiI	CCNNNNNNNGG	1 cut(s)	30
AgsI	TTSAA	3 cut(s)	233, 274, 528
AluBI	AGCT	3 cut(s)	166, 287, 458
AluI	AGCT	3 cut(s)	166, 287, 458
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	1 cut(s)	452
AlwI	GGATC	1 cut(s)	121
AoxI	GGCC	6 cut(s)	11, 219, 369, 384, 410, 475
ApeKI	GCWGC	3 cut(s)	111, 284, 314
AspS9I	GGNCC	6 cut(s)	11, 40, 255, 353, 369, 410
AsuHPI	GGTGA	2 cut(s)	13, 166
AvaII	GGWCC	3 cut(s)	40, 255, 353
BalI	TGGCCA	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	301
BauI	CACGAG	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	3 cut(s)	98, 296, 301
BceAI	ACGGC	1 cut(s)	206
BcoDI	GTCTC	1 cut(s)	452
BfaI	CTAG	1 cut(s)	98
BisI	GCNGC	3 cut(s)	112, 285, 315
BlsI	GCNGC	3 cut(s)	113, 286, 316
Bme18I	GGWCC	3 cut(s)	40, 255, 353
BmgT120I	GGNCC	6 cut(s)	11, 40, 255, 353, 369, 410
BmiI	GGNNCC	5 cut(s)	12, 41, 354, 411, 559
BmrI	ACTGGG	2 cut(s)	376, 450
BmuI	ACTGGG	2 cut(s)	376, 450
BpuEI	CTTGAG	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	29, 381
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	1 cut(s)	30
Bse1I	ACTGG	5 cut(s)	339, 356, 371, 445, 559
BseDI	CCNNGG	2 cut(s)	29, 381
BseLI	CCNNNNNNNGG	1 cut(s)	30
BseNI	ACTGG	5 cut(s)	339, 356, 371, 445, 559
BseXI	GCAGC	3 cut(s)	98, 296, 301
BshFI	GGCC	6 cut(s)	13, 221, 371, 386, 412, 477
BsiHKAI	GWGCWC	1 cut(s)	85
BslFI	GGGAC	2 cut(s)	53, 345
BslI	CCNNNNNNNGG	1 cut(s)	30
BsmAI	GTCTC	1 cut(s)	452
BsmFI	GGGAC	2 cut(s)	53, 345
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	6 cut(s)	13, 221, 371, 386, 412, 477
Bsp1286I	GDGCHC	2 cut(s)	85, 301
Bsp143I	GATC	2 cut(s)	126, 508
Bsp19I	CCATGG	1 cut(s)	29
BspACI	CCGC	2 cut(s)	177, 562
BspANI	GGCC	6 cut(s)	13, 221, 371, 386, 412, 477
BspHI	TCATGA	1 cut(s)	123
BspLI	GGNNCC	5 cut(s)	12, 41, 354, 411, 559
BspPI	GGATC	1 cut(s)	121
BspQI	GCTCTTC	1 cut(s)	306
BsrI	ACTGG	5 cut(s)	339, 356, 371, 445, 559
BssECI	CCNNGG	2 cut(s)	29, 381
BssMI	GATC	2 cut(s)	126, 508
BssSI	CACGAG	1 cut(s)	44
BssT1I	CCWWGG	2 cut(s)	29, 381
Bst2BI	CACGAG	1 cut(s)	44
Bst6I	CTCTTC	1 cut(s)	306
BstC8I	GCNNGC	2 cut(s)	164, 282
BstDSI	CCRYGG	1 cut(s)	29
BstKTI	GATC	2 cut(s)	129, 511
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	2 cut(s)	126, 508
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstV1I	GCAGC	3 cut(s)	98, 296, 301
BstXI	CCANNNNNNTGG	1 cut(s)	265
BsuRI	GGCC	6 cut(s)	13, 221, 371, 386, 412, 477
BtgI	CCRYGG	1 cut(s)	29
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	2 cut(s)	164, 282
CciI	TCATGA	1 cut(s)	123
Cfr13I	GGNCC	6 cut(s)	11, 40, 255, 353, 369, 410
Csp6I	GTAC	1 cut(s)	143
CspCI	CAANNNNNGTGG	2 cut(s)	376, 411
CviAII	CATG	4 cut(s)	30, 124, 252, 328
CviQI	GTAC	1 cut(s)	143
DpnI	GATC	2 cut(s)	128, 510
DpnII	GATC	2 cut(s)	126, 508
EaeI	YGGCCR	2 cut(s)	219, 384
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Eco130I	CCWWGG	2 cut(s)	29, 381
Eco147I	AGGCCT	1 cut(s)	477
Eco24I	GRGCYC	1 cut(s)	301
Eco47I	GGWCC	3 cut(s)	40, 255, 353
EcoO109I	RGGNCCY	2 cut(s)	11, 410
EcoT14I	CCWWGG	2 cut(s)	29, 381
EcoT38I	GRGCYC	1 cut(s)	301
ErhI	CCWWGG	2 cut(s)	29, 381
FaeI	CATG	4 cut(s)	33, 127, 255, 331
FaqI	GGGAC	2 cut(s)	53, 345
FatI	CATG	4 cut(s)	29, 123, 251, 327
FauI	CCCGC	1 cut(s)	569
Fnu4HI	GCNGC	3 cut(s)	112, 285, 315
FriOI	GRGCYC	1 cut(s)	301
Fsp4HI	GCNGC	3 cut(s)	112, 285, 315
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	3 cut(s)	112, 285, 315
HaeIII	GGCC	6 cut(s)	13, 221, 371, 386, 412, 477
Hin1II	CATG	4 cut(s)	33, 127, 255, 331
HinfI	GANTC	3 cut(s)	242, 445, 524
HphI	GGTGA	2 cut(s)	13, 166
Hpy188I	TCNGA	3 cut(s)	247, 455, 523
Hpy188III	TCNNGA	2 cut(s)	124, 504
HpyAV	CCTTC	4 cut(s)	24, 200, 343, 525
HpyCH4V	TGCA	3 cut(s)	162, 317, 436
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
Hsp92II	CATG	4 cut(s)	33, 127, 255, 331
Kzo9I	GATC	2 cut(s)	126, 508
LguI	GCTCTTC	1 cut(s)	306
LmnI	GCTCC	2 cut(s)	209, 455
LpnPI	CCDG	9 cut(s)	115, 172, 178, 320, 352, 369, 407, 426, 540
Lsp1109I	GCAGC	3 cut(s)	98, 296, 301
MaeI	CTAG	1 cut(s)	98
MaeIII	GTNAC	1 cut(s)	460
MalI	GATC	2 cut(s)	128, 510
MboI	GATC	2 cut(s)	126, 508
MboII	GAAGA	4 cut(s)	51, 293, 355, 358
MfeI	CAATTG	1 cut(s)	431
MhlI	GDGCHC	2 cut(s)	85, 301
MlsI	TGGCCA	1 cut(s)	386
MluCI	AATT	1 cut(s)	431
MluNI	TGGCCA	1 cut(s)	386
MlyI	GAGTC	1 cut(s)	454
MnlI	CCTC	4 cut(s)	29, 467, 488, 529
Mox20I	TGGCCA	1 cut(s)	386
MscI	TGGCCA	1 cut(s)	386
MseI	TTAA	2 cut(s)	375, 571
Msp20I	TGGCCA	1 cut(s)	386
MspA1I	CMGCKG	1 cut(s)	287
MunI	CAATTG	1 cut(s)	431
Mva1269I	GAATGC	1 cut(s)	538
MwoI	GCNNNNNNNGC	1 cut(s)	218
NcoI	CCATGG	1 cut(s)	29
NdeII	GATC	2 cut(s)	126, 508
NlaIII	CATG	4 cut(s)	33, 127, 255, 331
NlaIV	GGNNCC	5 cut(s)	12, 41, 354, 411, 559
PagI	TCATGA	1 cut(s)	123
PceI	AGGCCT	1 cut(s)	477
PciSI	GCTCTTC	1 cut(s)	306
PctI	GAATGC	1 cut(s)	538
PfeI	GAWTC	2 cut(s)	242, 524
PkrI	GCNGC	3 cut(s)	113, 286, 316
PleI	GAGTC	1 cut(s)	453
PpsI	GAGTC	1 cut(s)	453
PspN4I	GGNNCC	5 cut(s)	12, 41, 354, 411, 559
PspPI	GGNCC	6 cut(s)	11, 40, 255, 353, 369, 410
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	1 cut(s)	144
RsaNI	GTAC	1 cut(s)	143
SapI	GCTCTTC	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	375, 571
SatI	GCNGC	3 cut(s)	112, 285, 315
Sau3AI	GATC	2 cut(s)	126, 508
Sau96I	GGNCC	6 cut(s)	11, 40, 255, 353, 369, 410
SchI	GAGTC	1 cut(s)	454
SduI	GDGCHC	2 cut(s)	85, 301
SetI	ASST	4 cut(s)	26, 168, 289, 460
SinI	GGWCC	3 cut(s)	40, 255, 353
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	1 cut(s)	431
SseBI	AGGCCT	1 cut(s)	477
SsiI	CCGC	2 cut(s)	177, 562
SspMI	CTAG	1 cut(s)	98
StuI	AGGCCT	1 cut(s)	477
StyI	CCWWGG	2 cut(s)	29, 381
TasI	AATT	1 cut(s)	431
TatI	WGTACW	1 cut(s)	142
TfiI	GAWTC	2 cut(s)	242, 524
Tru1I	TTAA	2 cut(s)	375, 571
Tru9I	TTAA	2 cut(s)	375, 571
TscAI	CASTG	1 cut(s)	219
TseI	GCWGC	3 cut(s)	111, 284, 314
TspDTI	ATGAA	1 cut(s)	112
TspRI	CASTG	1 cut(s)	219
VpaK11BI	GGWCC	3 cut(s)	40, 255, 353
XcmI	CCANNNNNNNNNTGG	2 cut(s)	363, 394
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.