Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Forward (+)

27285505 .. 27286972

Gene Structure 1468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1192600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCTGTGATTCTATTGCAGTGTGGCGATGCAGGTCAGAACGTAATTGCTAGGCTTGCTCTAAACCAGGGAATGAGCCATTATGTATTCTTCGTCTACAGAATGGCTATTGCAACTGTTCTCATTTCTCCCTTCGCTCTCATTTTGGATAGGAAATCGCGGCCAAAGATGACCTTTTCCATCCTTGCTAAGACTATGCCGCTTAGCCTTTTCGACCCTGTACTTGACATGAACCTCTTCTACATGGCAATGTCATATTCTACAGCTACTTTCACATCTGCCATGTTCAATATTCTTCCTGCAATTGCATTTTTCATGGCCATGATCTTTAGGCTTGAGAAAGTAAACATTAGGAAACTTCATAGCCAAGCAAAGGTAGCGGGGACCACAGTCACGGTTGGGGGAGCTATTATATTGACTCTGGTCAAAGGACCGGAACTTAATTTTCCGTGGACAAAGGGCAAAGGTCTAAATTATGATCATCACCTGTTGCAAAGTGATTCAAACCCTAAAGACCTCATTAAGAGTGCCCTCGTGACTGCTGCATCTTGTTTCTTCTGGTCTTGTTTCATCATTTTGCAAGCTTTTACACTAAGATCATACCCTTGTGAGCTCTCCCTCACAGCTTTTACATGCTTTTGGGGTCTGGTTGAAGCCGCAGTACTTGCCCTTTTCATGGAACAGGAAAACCCTAATCCAGTCTGGTCTACACAATTTGACATCAAACTTTTGGCATCATTTTATGGGGCAATACTCTCTGGGGTTAATTATTATATCATGGGAATGGTAAACAAAGAAAAGGACCTGTTTACTATTCTTCTTTTAACCCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

278

Amino Acids

30.91

Weight (kDa)

8.92

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	15 - 121	3.7e-10	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	23
AccI	GTMKAC	2 cut(s)	96, 707
AccII	CGCG	1 cut(s)	160
AciI	CCGC	4 cut(s)	160, 200, 380, 657
AcoI	YGGCCR	2 cut(s)	161, 318
AfaI	GTAC	2 cut(s)	222, 663
AfiI	CCNNNNNNNGG	2 cut(s)	373, 676
AgsI	TTSAA	3 cut(s)	289, 504, 653
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	5 cut(s)	266, 407, 584, 613, 626
AluI	AGCT	5 cut(s)	266, 407, 584, 613, 626
Alw21I	GWGCWC	1 cut(s)	615
AoxI	GGCC	2 cut(s)	161, 318
ApeKI	GCWGC	1 cut(s)	542
Asp700I	GAANNNNTTC	1 cut(s)	236
AspS9I	GGNCC	3 cut(s)	384, 431, 802
AsuHPI	GGTGA	1 cut(s)	476
AvaII	GGWCC	3 cut(s)	384, 431, 802
BaeGI	GKGCMC	1 cut(s)	532
BalI	TGGCCA	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	615
BarI	GAAGNNNNNNTAC	2 cut(s)	645, 677
BauI	CACGAG	1 cut(s)	533
Bbv12I	GWGCWC	1 cut(s)	615
BbvI	GCAGC	1 cut(s)	529
BccI	CCATC	1 cut(s)	188
BciT130I	CCWGG	1 cut(s)	68
BclI	TGATCA	1 cut(s)	478
BfaI	CTAG	1 cut(s)	51
BfmI	CTRYAG	2 cut(s)	97, 261
BfuAI	ACCTGC	1 cut(s)	23
BisI	GCNGC	4 cut(s)	161, 200, 543, 657
BlpI	GCTNAGC	1 cut(s)	203
BlsI	GCNGC	4 cut(s)	162, 201, 544, 658
BmcAI	AGTACT	1 cut(s)	663
Bme1390I	CCNGG	1 cut(s)	68
Bme18I	GGWCC	3 cut(s)	384, 431, 802
BmgT120I	GGNCC	3 cut(s)	384, 431, 802
BmiI	GGNNCC	1 cut(s)	385
BmrFI	CCNGG	1 cut(s)	68
BmsI	GCATC	3 cut(s)	19, 554, 743
BoxI	GACNNNNGTC	2 cut(s)	389, 422
Bpu1102I	GCTNAGC	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	356
BsaJI	CCNNGG	2 cut(s)	67, 449
BsaWI	WCCGGW	1 cut(s)	433
Bsc4I	CCNNNNNNNGG	2 cut(s)	373, 676
Bse1I	ACTGG	1 cut(s)	698
Bse3DI	GCAATG	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	68
BseDI	CCNNGG	2 cut(s)	67, 449
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	373, 676
BseMI	GCAATG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	698
BseSI	GKGCMC	1 cut(s)	532
BseXI	GCAGC	1 cut(s)	529
Bsh1236I	CGCG	1 cut(s)	160
BshFI	GGCC	2 cut(s)	163, 320
BsiHKAI	GWGCWC	1 cut(s)	615
BsiSI	CCGG	1 cut(s)	434
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	2 cut(s)	373, 676
BsmFI	GGGAC	1 cut(s)	397
BsnI	GGCC	2 cut(s)	163, 320
Bsp1286I	GDGCHC	2 cut(s)	532, 615
Bsp143I	GATC	3 cut(s)	324, 478, 596
Bsp1720I	GCTNAGC	1 cut(s)	203
BspACI	CCGC	4 cut(s)	160, 200, 380, 657
BspANI	GGCC	2 cut(s)	163, 320
BspFNI	CGCG	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	385
BspMI	ACCTGC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	698
BssECI	CCNNGG	2 cut(s)	67, 449
BssMI	GATC	3 cut(s)	324, 478, 596
BssSI	CACGAG	1 cut(s)	533
Bst2BI	CACGAG	1 cut(s)	533
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	3 cut(s)	118, 391, 397
Bst6I	CTCTTC	1 cut(s)	242
BstAPI	GCANNNNNTGC	1 cut(s)	665
BstC8I	GCNNGC	2 cut(s)	57, 582
BstDEI	CTNAG	4 cut(s)	189, 203, 593, 831
BstDSI	CCRYGG	1 cut(s)	449
BstF5I	GGATG	1 cut(s)	180
BstFNI	CGCG	1 cut(s)	160
BstKTI	GATC	3 cut(s)	327, 481, 599
BstMBI	GATC	3 cut(s)	324, 478, 596
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 377, 665
BstNI	CCWGG	1 cut(s)	68
BstNSI	RCATGY	1 cut(s)	636
BstPAI	GACNNNNGTC	2 cut(s)	389, 422
BstSCI	CCNGG	1 cut(s)	66
BstSFI	CTRYAG	2 cut(s)	97, 261
BstSLI	GKGCMC	1 cut(s)	532
BstUI	CGCG	1 cut(s)	160
BstV1I	GCAGC	1 cut(s)	529
BsuRI	GGCC	2 cut(s)	163, 320
BtgI	CCRYGG	1 cut(s)	449
BtgZI	GCGATG	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	180
BtsI	GCAGTG	1 cut(s)	26
BtsIMutI	CAGTG	1 cut(s)	26
BveI	ACCTGC	1 cut(s)	23
Cac8I	GCNNGC	2 cut(s)	57, 582
Cfr13I	GGNCC	3 cut(s)	384, 431, 802
Csp6I	GTAC	2 cut(s)	221, 662
CviAII	CATG	8 cut(s)	229, 244, 283, 316, 322, 633, 676, 778
CviQI	GTAC	2 cut(s)	221, 662
DdeI	CTNAG	4 cut(s)	189, 203, 593, 831
DpnI	GATC	3 cut(s)	326, 480, 598
DpnII	GATC	3 cut(s)	324, 478, 596
EaeI	YGGCCR	2 cut(s)	161, 318
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
Ecl136II	GAGCTC	1 cut(s)	613
Eco24I	GRGCYC	1 cut(s)	615
Eco47I	GGWCC	3 cut(s)	384, 431, 802
Eco53kI	GAGCTC	1 cut(s)	613
EcoICRI	GAGCTC	1 cut(s)	613
EcoO109I	RGGNCCY	1 cut(s)	802
EcoRII	CCWGG	1 cut(s)	66
EcoT38I	GRGCYC	1 cut(s)	615
FaeI	CATG	8 cut(s)	232, 247, 286, 319, 325, 636, 679, 781
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	8 cut(s)	228, 243, 282, 315, 321, 632, 675, 777
FauI	CCCGC	1 cut(s)	373
FbaI	TGATCA	1 cut(s)	478
FblI	GTMKAC	2 cut(s)	96, 707
Fnu4HI	GCNGC	4 cut(s)	161, 200, 543, 657
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	1 cut(s)	615
Fsp4HI	GCNGC	4 cut(s)	161, 200, 543, 657
FspBI	CTAG	1 cut(s)	51
GluI	GCNGC	4 cut(s)	161, 200, 543, 657
HaeIII	GGCC	2 cut(s)	163, 320
HapII	CCGG	1 cut(s)	434
Hin1II	CATG	8 cut(s)	232, 247, 286, 319, 325, 636, 679, 781
HindIII	AAGCTT	1 cut(s)	582
HinfI	GANTC	3 cut(s)	10, 418, 500
HpaII	CCGG	1 cut(s)	434
HphI	GGTGA	1 cut(s)	476
Hpy166II	GTNNAC	6 cut(s)	97, 346, 453, 708, 790, 810
Hpy188I	TCNGA	1 cut(s)	39
Hpy188III	TCNNGA	1 cut(s)	535
Hpy8I	GTNNAC	6 cut(s)	97, 346, 453, 708, 790, 810
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	3 cut(s)	118, 391, 397
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	8 cut(s)	19, 32, 113, 302, 308, 493, 545, 580
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 377, 665
HpyF3I	CTNAG	4 cut(s)	189, 203, 593, 831
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	8 cut(s)	232, 247, 286, 319, 325, 636, 679, 781
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	3 cut(s)	324, 478, 596
LmnI	GCTCC	1 cut(s)	404
Lsp1109I	GCAGC	1 cut(s)	529
LweI	GCATC	3 cut(s)	19, 554, 743
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	2 cut(s)	391, 535
MalI	GATC	3 cut(s)	326, 480, 598
MboI	GATC	3 cut(s)	324, 478, 596
MboII	GAAGA	5 cut(s)	82, 229, 287, 547, 809
MfeI	CAATTG	1 cut(s)	303
MhlI	GDGCHC	2 cut(s)	532, 615
MlsI	TGGCCA	1 cut(s)	320
MluCI	AATT	6 cut(s)	45, 303, 442, 472, 713, 766
MluNI	TGGCCA	1 cut(s)	320
MlyI	GAGTC	1 cut(s)	412
MnlI	CCTC	4 cut(s)	245, 527, 542, 629
Mox20I	TGGCCA	1 cut(s)	320
MroXI	GAANNNNTTC	1 cut(s)	236
MscI	TGGCCA	1 cut(s)	320
MseI	TTAA	4 cut(s)	441, 522, 765, 824
MslI	CAYNNNNRTG	3 cut(s)	248, 320, 782
Msp20I	TGGCCA	1 cut(s)	320
MspI	CCGG	1 cut(s)	434
MspR9I	CCNGG	1 cut(s)	68
MunI	CAATTG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	68
MvnI	CGCG	1 cut(s)	160
MwoI	GCNNNNNNNGC	3 cut(s)	56, 377, 665
NdeII	GATC	3 cut(s)	324, 478, 596
NlaIII	CATG	8 cut(s)	232, 247, 286, 319, 325, 636, 679, 781
NlaIV	GGNNCC	1 cut(s)	385
NmuCI	GTSAC	2 cut(s)	391, 535
NspI	RCATGY	1 cut(s)	636
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	2 cut(s)	10, 500
PkrI	GCNGC	4 cut(s)	162, 201, 544, 658
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
PpuMI	RGGWCCY	1 cut(s)	802
PshAI	GACNNNNGTC	2 cut(s)	389, 422
Psp124BI	GAGCTC	1 cut(s)	615
Psp5II	RGGWCCY	1 cut(s)	802
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	385
PspPI	GGNCC	3 cut(s)	384, 431, 802
PspPPI	RGGWCCY	1 cut(s)	802
PsrI	GAACNNNNNNTAC	2 cut(s)	224, 256
RsaI	GTAC	2 cut(s)	222, 663
RsaNI	GTAC	2 cut(s)	221, 662
RseI	CAYNNNNRTG	3 cut(s)	248, 320, 782
SacI	GAGCTC	1 cut(s)	615
SaqAI	TTAA	4 cut(s)	441, 522, 765, 824
SatI	GCNGC	4 cut(s)	161, 200, 543, 657
Sau3AI	GATC	3 cut(s)	324, 478, 596
Sau96I	GGNCC	3 cut(s)	384, 431, 802
ScaI	AGTACT	1 cut(s)	663
SchI	GAGTC	1 cut(s)	412
ScrFI	CCNGG	1 cut(s)	68
SduI	GDGCHC	2 cut(s)	532, 615
SfaNI	GCATC	3 cut(s)	19, 554, 743
SfcI	CTRYAG	2 cut(s)	97, 261
SinI	GGWCC	3 cut(s)	384, 431, 802
SmiMI	CAYNNNNRTG	3 cut(s)	248, 320, 782
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	6 cut(s)	45, 303, 442, 472, 713, 766
SsiI	CCGC	4 cut(s)	160, 200, 380, 657
SspI	AATATT	1 cut(s)	292
SspMI	CTAG	1 cut(s)	51
SstI	GAGCTC	1 cut(s)	615
StyD4I	CCNGG	1 cut(s)	66
TaaI	ACNGT	3 cut(s)	118, 391, 397
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	1 cut(s)	213
TasI	AATT	6 cut(s)	45, 303, 442, 472, 713, 766
TatI	WGTACW	2 cut(s)	220, 661
TauI	GCSGC	3 cut(s)	163, 202, 659
TfiI	GAWTC	2 cut(s)	10, 500
Tru1I	TTAA	4 cut(s)	441, 522, 765, 824
Tru9I	TTAA	4 cut(s)	441, 522, 765, 824
TscAI	CASTG	1 cut(s)	26
TseFI	GTSAC	2 cut(s)	391, 535
TseI	GCWGC	1 cut(s)	542
Tsp45I	GTSAC	2 cut(s)	391, 535
TspDTI	ATGAA	5 cut(s)	245, 304, 350, 559, 664
TspGWI	ACGGA	1 cut(s)	438
TspRI	CASTG	1 cut(s)	26
VpaK11BI	GGWCC	3 cut(s)	384, 431, 802
XceI	RCATGY	1 cut(s)	636
XmiI	GTMKAC	2 cut(s)	96, 707
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	1 cut(s)	51
ZrmI	AGTACT	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.