pycom07g18220

WAT1-related protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
20718624 .. 20718923
300 bp
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UTR
Exon/CDS
Intron
pycom07g18220.1

Sequence Viewer

Length: 300 bp
ATGAATTTATCATGGTTTTGCAGGCTTGAGAAAGTAAACATTAGGGAACTTCATAGCCAAGCAAAGGTAGCGGGGACCGTAGTCACGGTTGGGGGAGCTATTATTTTGAGTCTGTTCAAAGGACCGGAACTTAATTTTCCGTGGACAAAGGGCAAAGATCTAAATTATGATCATCACCAGTTGCAAAGTGATTCAAACCCTAAAGACCTCATTAAGAGTGCCCTCGTGACTGCTGCATCTTGTTTCTTCTGGTCTTGTTTCATCATTTTGCAAGTAAGAACTCTCAAATCGACACCGTAG

Protein Analysis

100

Amino Acids

11.12

Weight (kDa)

9.18

Isoelectric Point (pI)

30.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000617)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39510
fragaria_vesca FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 71
AcsI RAATTY 1 cut(s) 4
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 2 cut(s) 118, 195
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 1 cut(s) 4
AspS9I GGNCC 2 cut(s) 75, 122
AsuHPI GGTGA 1 cut(s) 167
AvaII GGWCC 2 cut(s) 75, 122
BaeGI GKGCMC 1 cut(s) 223
BauI CACGAG 1 cut(s) 224
BbvI GCAGC 1 cut(s) 220
BclI TGATCA 1 cut(s) 169
BglII AGATCT 1 cut(s) 157
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme18I GGWCC 2 cut(s) 75, 122
BmgT120I GGNCC 2 cut(s) 75, 122
BmiI GGNNCC 1 cut(s) 76
BmsI GCATC 1 cut(s) 245
BoxI GACNNNNGTC 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 140
BsaWI WCCGGW 1 cut(s) 124
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 64
BseNI ACTGG 1 cut(s) 178
BseSI GKGCMC 1 cut(s) 223
BseXI GCAGC 1 cut(s) 220
BsiSI CCGG 1 cut(s) 125
BslFI GGGAC 1 cut(s) 88
BslI CCNNNNNNNGG 1 cut(s) 64
BsmFI GGGAC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 223
Bsp143I GATC 2 cut(s) 157, 169
BspACI CCGC 1 cut(s) 71
BspLI GGNNCC 1 cut(s) 76
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 2 cut(s) 157, 169
BssSI CACGAG 1 cut(s) 224
Bst2BI CACGAG 1 cut(s) 224
Bst4CI ACNGT 3 cut(s) 79, 88, 297
BstC8I GCNNGC 1 cut(s) 23
BstDSI CCRYGG 1 cut(s) 140
BstKTI GATC 2 cut(s) 160, 172
BstMBI GATC 2 cut(s) 157, 169
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstPAI GACNNNNGTC 1 cut(s) 80
BstSLI GKGCMC 1 cut(s) 223
BstV1I GCAGC 1 cut(s) 220
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BtgI CCRYGG 1 cut(s) 140
Cac8I GCNNGC 1 cut(s) 23
Cfr13I GGNCC 2 cut(s) 75, 122
CviAII CATG 1 cut(s) 12
CviJI RGCY 3 cut(s) 25, 57, 98
CviKI_1 RGCY 3 cut(s) 25, 57, 98
DpnI GATC 2 cut(s) 159, 171
DpnII GATC 2 cut(s) 157, 169
Eco47I GGWCC 2 cut(s) 75, 122
FaeI CATG 1 cut(s) 15
FaiI YATR 3 cut(s) 13, 54, 168
FaqI GGGAC 1 cut(s) 88
FatI CATG 1 cut(s) 11
FauI CCCGC 1 cut(s) 64
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 234
GluI GCNGC 1 cut(s) 234
HapII CCGG 1 cut(s) 125
Hin1II CATG 1 cut(s) 15
HinfI GANTC 2 cut(s) 109, 191
HpaII CCGG 1 cut(s) 125
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 2 cut(s) 37, 144
Hpy188III TCNNGA 1 cut(s) 226
Hpy8I GTNNAC 2 cut(s) 37, 144
HpyCH4III ACNGT 3 cut(s) 79, 88, 297
HpyCH4V TGCA 4 cut(s) 21, 184, 236, 271
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
Hsp92II CATG 1 cut(s) 15
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 2 cut(s) 157, 169
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 4 cut(s) 7, 138, 191, 235
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 1 cut(s) 245
MaeIII GTNAC 2 cut(s) 82, 226
MalI GATC 2 cut(s) 159, 171
MboI GATC 2 cut(s) 157, 169
MboII GAAGA 1 cut(s) 238
MflI RGATCY 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 223
MluCI AATT 3 cut(s) 4, 133, 163
MlyI GAGTC 1 cut(s) 118
MnlI CCTC 2 cut(s) 218, 233
MseI TTAA 2 cut(s) 132, 213
MspI CCGG 1 cut(s) 125
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 2 cut(s) 157, 169
NlaIII CATG 1 cut(s) 15
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 2 cut(s) 82, 226
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 1 cut(s) 235
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
PshAI GACNNNNGTC 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 2 cut(s) 75, 122
PsuI RGATCY 1 cut(s) 157
SaqAI TTAA 2 cut(s) 132, 213
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 2 cut(s) 157, 169
Sau96I GGNCC 2 cut(s) 75, 122
SchI GAGTC 1 cut(s) 118
SduI GDGCHC 1 cut(s) 223
SetI ASST 3 cut(s) 69, 100, 210
SfaNI GCATC 1 cut(s) 245
SinI GGWCC 2 cut(s) 75, 122
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 3 cut(s) 4, 133, 163
SsiI CCGC 1 cut(s) 71
TaaI ACNGT 3 cut(s) 79, 88, 297
TaqI TCGA 1 cut(s) 290
TasI AATT 3 cut(s) 4, 133, 163
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 2 cut(s) 132, 213
Tru9I TTAA 2 cut(s) 132, 213
TseFI GTSAC 2 cut(s) 82, 226
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 2 cut(s) 82, 226
TspDTI ATGAA 3 cut(s) 17, 41, 250
TspGWI ACGGA 1 cut(s) 129
VpaK11BI GGWCC 2 cut(s) 75, 122
XapI RAATTY 1 cut(s) 4
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.