Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Forward (+)

56785269 .. 56786079

Gene Structure 811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59066

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTCAGCAGCTTGTCTCTCCTGGTCTGTTTTCATTGTTTGGCAAACATATACATTAAGGTCATACCCTTGTCAGCTCTCCCTCTCAACCTTGATATGTTTCTGGAGTACGGTGGAAGCAACAGTTGTAGCTCTTGTAATGGAATGGATAAACAGTGCAGCATGGTCTATACACTTGGATGTCAAACTCTTAACAGCTGTTTGCAGGGGAATACTCTCAGGGGTTGCTTATTGTCTTATAGGGATTGTAGTGAAGGAAAGGGGACCTGTTTTCTATTCTGCTTTTCATCCCTTAGGCACTATAATCGTTGCAATTTTGGGCTCCTTTGTTTTAGCTGAGCAAATGTACCTTTGGAGTCTTACTGGAGCCATCATCATCATTGTTGGCCTATTTATGGTTTTATGGGGAAAAACCAATGACCAACCTCCATCTCAATCACAATCACAAAGCGAAAATGGAGATGATCTACCAAAACTAGGAGAAATAAAGATTCAAATAATGTTGTTGCTGTTATATTTACAATCGATGAAAGTAGTGAGGCCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

182

Amino Acids

20.17

Weight (kDa)

6.7

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	3 - 134	2.3e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	109, 347
AfiI	CCNNNNNNNGG	2 cut(s)	394, 476
AgsI	TTSAA	1 cut(s)	494
AjnI	CCWGG	1 cut(s)	20
AluBI	AGCT	5 cut(s)	11, 76, 131, 197, 335
AluI	AGCT	5 cut(s)	11, 76, 131, 197, 335
Alw26I	GTCTC	1 cut(s)	20
AoxI	GGCC	2 cut(s)	385, 539
ApeKI	GCWGC	2 cut(s)	8, 158
AspS9I	GGNCC	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	263
AxyI	CCTNAGG	1 cut(s)	292
BanII	GRGCYC	1 cut(s)	323
BbvI	GCAGC	2 cut(s)	20, 170
BccI	CCATC	2 cut(s)	377, 436
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BciT130I	CCWGG	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	20
BfaI	CTAG	1 cut(s)	476
BisI	GCNGC	2 cut(s)	9, 159
BlpI	GCTNAGC	1 cut(s)	336
BlsI	GCNGC	2 cut(s)	10, 160
Bme1390I	CCNGG	1 cut(s)	22
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	3 cut(s)	264, 322, 367
BmrFI	CCNGG	1 cut(s)	22
BpmI	CTGGAG	2 cut(s)	124, 384
Bpu1102I	GCTNAGC	1 cut(s)	336
Bsa29I	ATCGAT	1 cut(s)	524
Bsc4I	CCNNNNNNNGG	2 cut(s)	394, 476
Bse1I	ACTGG	1 cut(s)	367
Bse21I	CCTNAGG	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	22
BseCI	ATCGAT	1 cut(s)	524
BseGI	GGATG	2 cut(s)	184, 286
BseLI	CCNNNNNNNGG	2 cut(s)	394, 476
BseMII	CTCAG	2 cut(s)	231, 327
BseNI	ACTGG	1 cut(s)	367
BseXI	GCAGC	2 cut(s)	20, 170
BsgI	GTGCAG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	387, 541
BshVI	ATCGAT	1 cut(s)	524
BslFI	GGGAC	1 cut(s)	276
BslI	CCNNNNNNNGG	2 cut(s)	394, 476
BsmAI	GTCTC	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	276
BsnI	GGCC	2 cut(s)	387, 541
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp143I	GATC	1 cut(s)	463
Bsp1720I	GCTNAGC	1 cut(s)	336
BspANI	GGCC	2 cut(s)	387, 541
BspCNI	CTCAG	2 cut(s)	230, 328
BspDI	ATCGAT	1 cut(s)	524
BspLI	GGNNCC	3 cut(s)	264, 322, 367
BsrI	ACTGG	1 cut(s)	367
BssMI	GATC	1 cut(s)	463
Bst2UI	CCWGG	1 cut(s)	22
Bst4CI	ACNGT	3 cut(s)	112, 124, 155
BstDEI	CTNAG	3 cut(s)	217, 292, 336
BstF5I	GGATG	2 cut(s)	184, 286
BstKTI	GATC	1 cut(s)	466
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	1 cut(s)	463
BstNI	CCWGG	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	20
BstV1I	GCAGC	2 cut(s)	20, 170
Bsu15I	ATCGAT	1 cut(s)	524
Bsu36I	CCTNAGG	1 cut(s)	292
BsuRI	GGCC	2 cut(s)	387, 541
BsuTUI	ATCGAT	1 cut(s)	524
BtsCI	GGATG	2 cut(s)	184, 286
BtsIMutI	CAGTG	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	263
ClaI	ATCGAT	1 cut(s)	524
Csp6I	GTAC	2 cut(s)	108, 346
CviAII	CATG	1 cut(s)	162
CviJI	RGCY	9 cut(s)	11, 76, 131, 197, 321, 335, 368, 387, 541
CviKI_1	RGCY	9 cut(s)	11, 76, 131, 197, 321, 335, 368, 387, 541
CviQI	GTAC	2 cut(s)	108, 346
DdeI	CTNAG	3 cut(s)	217, 292, 336
DpnI	GATC	1 cut(s)	465
DpnII	GATC	1 cut(s)	463
Eco147I	AGGCCT	1 cut(s)	541
Eco24I	GRGCYC	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	263
Eco81I	CCTNAGG	1 cut(s)	292
EcoO109I	RGGNCCY	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	20
EcoT38I	GRGCYC	1 cut(s)	323
FaeI	CATG	1 cut(s)	165
FaqI	GGGAC	1 cut(s)	276
FatI	CATG	1 cut(s)	161
Fnu4HI	GCNGC	2 cut(s)	9, 159
FokI	GGATG	2 cut(s)	191, 273
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	2 cut(s)	9, 159
FspBI	CTAG	1 cut(s)	476
GluI	GCNGC	2 cut(s)	9, 159
GsuI	CTGGAG	2 cut(s)	124, 384
HaeIII	GGCC	2 cut(s)	387, 541
Hin1II	CATG	1 cut(s)	165
HinfI	GANTC	2 cut(s)	355, 490
Hpy188III	TCNNGA	1 cut(s)	103
HpyAV	CCTTC	1 cut(s)	247
HpyCH4III	ACNGT	3 cut(s)	112, 124, 155
HpyCH4V	TGCA	3 cut(s)	158, 204, 311
HpyF3I	CTNAG	3 cut(s)	217, 292, 336
Hsp92II	CATG	1 cut(s)	165
Kzo9I	GATC	1 cut(s)	463
LmnI	GCTCC	2 cut(s)	326, 365
LpnPI	CCDG	7 cut(s)	7, 34, 88, 190, 204, 279, 348
Lsp1109I	GCAGC	2 cut(s)	20, 170
MaeI	CTAG	1 cut(s)	476
MalI	GATC	1 cut(s)	465
MboI	GATC	1 cut(s)	463
MhlI	GDGCHC	1 cut(s)	323
MluCI	AATT	1 cut(s)	312
MlyI	GAGTC	1 cut(s)	364
MnlI	CCTC	3 cut(s)	92, 435, 531
MseI	TTAA	2 cut(s)	56, 191
MslI	CAYNNNNRTG	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	22
NdeII	GATC	1 cut(s)	463
NlaIII	CATG	1 cut(s)	165
NlaIV	GGNNCC	3 cut(s)	264, 322, 367
PceI	AGGCCT	1 cut(s)	541
PfeI	GAWTC	1 cut(s)	490
PkrI	GCNGC	2 cut(s)	10, 160
PleI	GAGTC	1 cut(s)	363
PpsI	GAGTC	1 cut(s)	363
PpuMI	RGGWCCY	1 cut(s)	263
Psp5II	RGGWCCY	1 cut(s)	263
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
PspN4I	GGNNCC	3 cut(s)	264, 322, 367
PspPI	GGNCC	1 cut(s)	263
PspPPI	RGGWCCY	1 cut(s)	263
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	2 cut(s)	109, 347
RsaNI	GTAC	2 cut(s)	108, 346
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	56, 191
SatI	GCNGC	2 cut(s)	9, 159
Sau3AI	GATC	1 cut(s)	463
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	1 cut(s)	364
ScrFI	CCNGG	1 cut(s)	22
SduI	GDGCHC	1 cut(s)	323
SinI	GGWCC	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	177
Sse9I	AATT	1 cut(s)	312
SseBI	AGGCCT	1 cut(s)	541
SspMI	CTAG	1 cut(s)	476
StuI	AGGCCT	1 cut(s)	541
StyD4I	CCNGG	1 cut(s)	20
TaaI	ACNGT	3 cut(s)	112, 124, 155
TaqI	TCGA	1 cut(s)	524
TasI	AATT	1 cut(s)	312
TfiI	GAWTC	1 cut(s)	490
Tru1I	TTAA	2 cut(s)	56, 191
Tru9I	TTAA	2 cut(s)	56, 191
TscAI	CASTG	1 cut(s)	160
TseI	GCWGC	2 cut(s)	8, 158
TspDTI	ATGAA	3 cut(s)	22, 275, 542
TspRI	CASTG	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	263
XspI	CTAG	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.