Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003987.1

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Reverse (-)

53049 .. 54530

Gene Structure 1482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003987.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atgctcactcaagcaaagccatttgtggctgtgattctgatgcaatttgggttagcaggaatgtccataattacaaaatttgctctaaaccaagggatgagccaacatgtattagttgtctataggcatgctgttgcctttgtttttataactccttttgcccttttctttgataggcctgtaatcgacgggaacttgttctatactgggatgaagctgacaacagcaacatttacaatggccatgtgcaatgttcttcctgcctttgcattcataatggcttggattttcaggcttgagaaggttgatattagaagacttcacagccaggcaaagatattggggaccgtagtgactgtgggaggagctatgcttatgactctggtcaatggacccatgttgactcttccatggacaagaagcagtagccatcatcaaactacaagttccacagatagccaagatcccataaagggtgctctcatgattgcagctggatgtttctgctgggctagtttcttcattcttcaagcaattactctaaaagtataccctgctgagctctcccttacagcttggatatgtttgatgggtgcgttggaaggtaccgtggcagctctagcttttgagtggcataaccctgcagcttgggccatacacttggattctaagttgttagctgctgtttacggtggagtaatatgttctggagtgacttattatattcaggggatggtaatgaaggaaagaggacctgtttttgtgactgcatttaatcccctatgcatggtcattgcagccattttgagctccatcaccttgtccgaaatactgtacttgggaaggtttgcatctctctttaaatcttactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032870 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:0099568 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

290

Amino Acids

31.79

Weight (kDa)

9.05

Isoelectric Point (pI)

31.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	149
Acc65I	GGTACC	1 cut(s)	605
AccB1I	GGYRCC	1 cut(s)	605
AccI	GTMKAC	1 cut(s)	549
AclWI	GGATC	1 cut(s)	458
AcoI	YGGCCR	1 cut(s)	240
AcsI	RAATTY	1 cut(s)	77
AfaI	GTAC	2 cut(s)	607, 836
AfiI	CCNNNNNNNGG	2 cut(s)	473, 787
AflIII	ACRYGT	1 cut(s)	106
AgsI	TTSAA	1 cut(s)	530
AjnI	CCWGG	1 cut(s)	327
Alw21I	GWGCWC	3 cut(s)	481, 564, 812
AlwI	GGATC	1 cut(s)	458
AoxI	GGCC	3 cut(s)	176, 240, 651
ApeKI	GCWGC	5 cut(s)	491, 614, 644, 680, 797
ApoI	RAATTY	1 cut(s)	77
Asp700I	GAANNNNTTC	1 cut(s)	197
Asp718I	GGTACC	1 cut(s)	605
AspS9I	GGNCC	4 cut(s)	345, 392, 651, 752
AsuHPI	GGTGA	1 cut(s)	808
AvaII	GGWCC	3 cut(s)	345, 392, 752
BalI	TGGCCA	1 cut(s)	242
BanI	GGYRCC	1 cut(s)	605
BanII	GRGCYC	2 cut(s)	564, 812
BbsI	GAAGAC	1 cut(s)	322
Bbv12I	GWGCWC	3 cut(s)	481, 564, 812
BbvI	GCAGC	5 cut(s)	503, 626, 656, 667, 809
BccI	CCATC	4 cut(s)	438, 583, 727, 821
BciT130I	CCWGG	1 cut(s)	329
BfaI	CTAG	2 cut(s)	513, 620
BfmI	CTRYAG	2 cut(s)	121, 642
BisI	GCNGC	5 cut(s)	492, 615, 645, 681, 798
BlpI	GCTNAGC	1 cut(s)	558
BlsI	GCNGC	5 cut(s)	493, 616, 646, 682, 799
Bme1390I	CCNGG	1 cut(s)	329
Bme18I	GGWCC	3 cut(s)	345, 392, 752
BmgT120I	GGNCC	4 cut(s)	345, 392, 651, 752
BmiI	GGNNCC	3 cut(s)	346, 394, 607
BmrFI	CCNGG	1 cut(s)	329
BmrI	ACTGGG	1 cut(s)	216
BmsI	GCATC	2 cut(s)	30, 860
BmuI	ACTGGG	1 cut(s)	216
BoxI	GACNNNNGTC	1 cut(s)	383
BpiI	GAAGAC	1 cut(s)	322
BpmI	CTGGAG	1 cut(s)	729
Bpu1102I	GCTNAGC	1 cut(s)	558
BpuEI	CTTGAG	1 cut(s)	317
BsaJI	CCNNGG	3 cut(s)	91, 410, 609
Bsc4I	CCNNNNNNNGG	2 cut(s)	473, 787
Bse1I	ACTGG	1 cut(s)	211
Bse3DI	GCAATG	2 cut(s)	256, 792
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	3 cut(s)	91, 410, 609
BseGI	GGATG	4 cut(s)	102, 216, 503, 738
BseLI	CCNNNNNNNGG	2 cut(s)	473, 787
BseMI	GCAATG	2 cut(s)	256, 792
BseMII	CTCAG	1 cut(s)	549
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	1 cut(s)	378
BseXI	GCAGC	5 cut(s)	503, 626, 656, 667, 809
BseYI	CCCAGC	1 cut(s)	507
BshFI	GGCC	3 cut(s)	178, 242, 653
BshNI	GGYRCC	1 cut(s)	605
BsiHKAI	GWGCWC	3 cut(s)	481, 564, 812
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	2 cut(s)	473, 787
BsmFI	GGGAC	1 cut(s)	358
BsmI	GAATGC	1 cut(s)	269
BsnI	GGCC	3 cut(s)	178, 242, 653
Bsp1286I	GDGCHC	3 cut(s)	481, 564, 812
Bsp143I	GATC	1 cut(s)	463
Bsp1720I	GCTNAGC	1 cut(s)	558
Bsp19I	CCATGG	1 cut(s)	410
BspANI	GGCC	3 cut(s)	178, 242, 653
BspCNI	CTCAG	1 cut(s)	550
BspHI	TCATGA	1 cut(s)	483
BspLI	GGNNCC	3 cut(s)	346, 394, 607
BspMAI	CTGCAG	1 cut(s)	646
BspPI	GGATC	1 cut(s)	458
BspT107I	GGYRCC	1 cut(s)	605
BsrDI	GCAATG	2 cut(s)	256, 792
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	3 cut(s)	91, 410, 609
BssMI	GATC	1 cut(s)	463
BssNAI	GTATAC	1 cut(s)	550
BssT1I	CCWWGG	2 cut(s)	91, 410
Bst1107I	GTATAC	1 cut(s)	550
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	5 cut(s)	349, 358, 610, 692, 834
Bst6I	CTCTTC	1 cut(s)	411
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	2 cut(s)	558, 669
BstDSI	CCRYGG	2 cut(s)	410, 609
BstF5I	GGATG	4 cut(s)	102, 216, 503, 738
BstKTI	GATC	1 cut(s)	466
BstMBI	GATC	1 cut(s)	463
BstMWI	GCNNNNNNNGC	2 cut(s)	620, 650
BstNI	CCWGG	1 cut(s)	329
BstNSI	RCATGY	2 cut(s)	110, 131
BstPAI	GACNNNNGTC	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	327
BstSFI	CTRYAG	2 cut(s)	121, 642
BstV1I	GCAGC	5 cut(s)	503, 626, 656, 667, 809
BstV2I	GAAGAC	1 cut(s)	322
BstX2I	RGATCY	1 cut(s)	463
BstXI	CCANNNNNNTGG	1 cut(s)	661
BstYI	RGATCY	1 cut(s)	463
BstZ17I	GTATAC	1 cut(s)	550
BsuRI	GGCC	3 cut(s)	178, 242, 653
BtgI	CCRYGG	2 cut(s)	410, 609
BtsCI	GGATG	4 cut(s)	102, 216, 503, 738
Cac8I	GCNNGC	1 cut(s)	129
CciI	TCATGA	1 cut(s)	483
Cfr13I	GGNCC	4 cut(s)	345, 392, 651, 752
Csp6I	GTAC	2 cut(s)	606, 835
CviAII	CATG	7 cut(s)	107, 128, 244, 397, 411, 484, 787
CviQI	GTAC	2 cut(s)	606, 835
DdeI	CTNAG	2 cut(s)	558, 669
DpnI	GATC	1 cut(s)	465
DpnII	GATC	1 cut(s)	463
DraI	TTTAAA	1 cut(s)	862
EaeI	YGGCCR	1 cut(s)	240
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Ecl136II	GAGCTC	2 cut(s)	562, 810
Eco130I	CCWWGG	2 cut(s)	91, 410
Eco147I	AGGCCT	1 cut(s)	178
Eco24I	GRGCYC	2 cut(s)	564, 812
Eco47I	GGWCC	3 cut(s)	345, 392, 752
Eco53kI	GAGCTC	2 cut(s)	562, 810
EcoICRI	GAGCTC	2 cut(s)	562, 810
EcoO109I	RGGNCCY	1 cut(s)	752
EcoRII	CCWGG	1 cut(s)	327
EcoT14I	CCWWGG	2 cut(s)	91, 410
EcoT22I	ATGCAT	1 cut(s)	788
EcoT38I	GRGCYC	2 cut(s)	564, 812
ErhI	CCWWGG	2 cut(s)	91, 410
FaeI	CATG	7 cut(s)	110, 131, 247, 400, 414, 487, 790
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	7 cut(s)	106, 127, 243, 396, 410, 483, 786
FblI	GTMKAC	1 cut(s)	549
Fnu4HI	GCNGC	5 cut(s)	492, 615, 645, 681, 798
FokI	GGATG	4 cut(s)	109, 223, 510, 745
FriOI	GRGCYC	2 cut(s)	564, 812
Fsp4HI	GCNGC	5 cut(s)	492, 615, 645, 681, 798
FspBI	CTAG	2 cut(s)	513, 620
GluI	GCNGC	5 cut(s)	492, 615, 645, 681, 798
GsaI	CCCAGC	1 cut(s)	511
GsuI	CTGGAG	1 cut(s)	729
HaeIII	GGCC	3 cut(s)	178, 242, 653
Hin1II	CATG	7 cut(s)	110, 131, 247, 400, 414, 487, 790
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HinfI	GANTC	4 cut(s)	34, 379, 403, 665
HphI	GGTGA	1 cut(s)	808
Hpy166II	GTNNAC	3 cut(s)	402, 550, 688
Hpy188I	TCNGA	2 cut(s)	39, 826
Hpy188III	TCNNGA	2 cut(s)	484, 708
Hpy8I	GTNNAC	3 cut(s)	402, 550, 688
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	4 cut(s)	295, 596, 736, 837
HpyCH4III	ACNGT	5 cut(s)	349, 358, 610, 692, 834
HpyCH4V	TGCA	9 cut(s)	43, 249, 269, 491, 644, 770, 786, 797, 851
HpyF10VI	GCNNNNNNNGC	2 cut(s)	620, 650
HpyF3I	CTNAG	2 cut(s)	558, 669
Hsp92II	CATG	7 cut(s)	110, 131, 247, 400, 414, 487, 790
KpnI	GGTACC	1 cut(s)	609
Kzo9I	GATC	1 cut(s)	463
LmnI	GCTCC	2 cut(s)	365, 815
Lsp1109I	GCAGC	5 cut(s)	503, 626, 656, 667, 809
LweI	GCATC	2 cut(s)	30, 860
MaeI	CTAG	2 cut(s)	513, 620
MaeIII	GTNAC	3 cut(s)	352, 712, 763
MalI	GATC	1 cut(s)	465
MboI	GATC	1 cut(s)	463
MboII	GAAGA	5 cut(s)	248, 327, 398, 511, 518
MflI	RGATCY	1 cut(s)	463
MhlI	GDGCHC	3 cut(s)	481, 564, 812
MlsI	TGGCCA	1 cut(s)	242
MluCI	AATT	4 cut(s)	44, 69, 77, 534
MluNI	TGGCCA	1 cut(s)	242
MlyI	GAGTC	2 cut(s)	373, 397
MmeI	TCCRAC	1 cut(s)	579
MnlI	CCTC	2 cut(s)	356, 743
Mox20I	TGGCCA	1 cut(s)	242
Mph1103I	ATGCAT	1 cut(s)	788
MroXI	GAANNNNTTC	1 cut(s)	197
MscI	TGGCCA	1 cut(s)	242
MseI	TTAA	2 cut(s)	774, 861
Msp20I	TGGCCA	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	494
MspR9I	CCNGG	1 cut(s)	329
Mva1269I	GAATGC	1 cut(s)	269
MvaI	CCWGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	2 cut(s)	620, 650
NcoI	CCATGG	1 cut(s)	410
NdeII	GATC	1 cut(s)	463
NlaIII	CATG	7 cut(s)	110, 131, 247, 400, 414, 487, 790
NlaIV	GGNNCC	3 cut(s)	346, 394, 607
NmuCI	GTSAC	3 cut(s)	352, 712, 763
NsiI	ATGCAT	1 cut(s)	788
NspI	RCATGY	2 cut(s)	110, 131
PaeI	GCATGC	1 cut(s)	131
PagI	TCATGA	1 cut(s)	483
PceI	AGGCCT	1 cut(s)	178
PciI	ACATGT	1 cut(s)	106
PctI	GAATGC	1 cut(s)	269
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	2 cut(s)	34, 665
PkrI	GCNGC	5 cut(s)	493, 616, 646, 682, 799
PleI	GAGTC	2 cut(s)	373, 397
PpsI	GAGTC	2 cut(s)	373, 397
PpuMI	RGGWCCY	1 cut(s)	752
PscI	ACATGT	1 cut(s)	106
PshAI	GACNNNNGTC	1 cut(s)	383
PsiI	TTATAA	1 cut(s)	149
Psp124BI	GAGCTC	2 cut(s)	564, 812
Psp5II	RGGWCCY	1 cut(s)	752
Psp6I	CCWGG	1 cut(s)	327
PspFI	CCCAGC	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	3 cut(s)	346, 394, 607
PspPI	GGNCC	4 cut(s)	345, 392, 651, 752
PspPPI	RGGWCCY	1 cut(s)	752
PstI	CTGCAG	1 cut(s)	646
PsuI	RGATCY	1 cut(s)	463
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	2 cut(s)	607, 836
RsaNI	GTAC	2 cut(s)	606, 835
SacI	GAGCTC	2 cut(s)	564, 812
SaqAI	TTAA	2 cut(s)	774, 861
SatI	GCNGC	5 cut(s)	492, 615, 645, 681, 798
Sau3AI	GATC	1 cut(s)	463
Sau96I	GGNCC	4 cut(s)	345, 392, 651, 752
SchI	GAGTC	2 cut(s)	373, 397
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	3 cut(s)	481, 564, 812
SfaNI	GCATC	2 cut(s)	30, 860
SfcI	CTRYAG	2 cut(s)	121, 642
SinI	GGWCC	3 cut(s)	345, 392, 752
SmlI	CTYRAG	2 cut(s)	9, 296
SmoI	CTYRAG	2 cut(s)	9, 296
SphI	GCATGC	1 cut(s)	131
Sse9I	AATT	4 cut(s)	44, 69, 77, 534
SseBI	AGGCCT	1 cut(s)	178
SspMI	CTAG	2 cut(s)	513, 620
SstI	GAGCTC	2 cut(s)	564, 812
StuI	AGGCCT	1 cut(s)	178
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	2 cut(s)	91, 410
TaaI	ACNGT	5 cut(s)	349, 358, 610, 692, 834
TaqI	TCGA	1 cut(s)	186
TasI	AATT	4 cut(s)	44, 69, 77, 534
TatI	WGTACW	1 cut(s)	834
TfiI	GAWTC	2 cut(s)	34, 665
Tru1I	TTAA	2 cut(s)	774, 861
Tru9I	TTAA	2 cut(s)	774, 861
TseFI	GTSAC	3 cut(s)	352, 712, 763
TseI	GCWGC	5 cut(s)	491, 614, 644, 680, 797
Tsp45I	GTSAC	3 cut(s)	352, 712, 763
TspDTI	ATGAA	4 cut(s)	227, 262, 511, 755
VpaK11BI	GGWCC	3 cut(s)	345, 392, 752
XapI	RAATTY	1 cut(s)	77
XceI	RCATGY	2 cut(s)	110, 131
XmiI	GTMKAC	1 cut(s)	549
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	2 cut(s)	513, 620
Zsp2I	ATGCAT	1 cut(s)	788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.