Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003987.1

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Forward (+)

26175 .. 27860

Gene Structure 1686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003987.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atgtttatggggttgatccgccagacaaagcttgtgttagcagtgattttggtgcagcttgggtatgctgggctttcgataatctctgtgtttgccctaaagaagggaatgagtccttacacattcatcgtgtaccgaatggccattgccactattgttctagctccatttgcattcattttggagaggaattcaagacctccgatgacttggtccatcactggaaagataatgttgctgagccttttcgaccctgtgcttgaccagaacctctactacatgggaatgaagaattcgagtgcaacgttcacttctgcaatgtgcaatatgctgcctgcttttgcattttgtctagcctggatttttaggtttgagaaggttagccttaagaaactgcacagcatagcaaaggtcatggggacgatcatcacagttgggggagcaatagtcttgactctagttagaggtccctcattgtgtctaccatgggccattgaagaacaaattgatcctcatcaatctgcgcaatgctattcgggtcaggcagacctcgcaatgcaatctggtgttgcttattatgtgatgggaatggtagtgaaggaaaagggacctgttttttactcggcttttaatcccttggccacagtaatggttgcaatcctgggttcctttgttttagcagaacaattgtaccttgggagtgttattggagcagctgtaatcatcattggtctgtatctcattctttggggaaaagcaaaggaccagtctcctccatcacagagctgcatgatcgatgaagtagcaccactaacacaaagattaatagatgatcaacaatgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

281

Amino Acids

30.81

Weight (kDa)

8.84

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	525
AccI	GTMKAC	1 cut(s)	481
AciI	CCGC	1 cut(s)	19
AclI	AACGTT	1 cut(s)	305
AclWI	GGATC	2 cut(s)	10, 503
AcoI	YGGCCR	2 cut(s)	141, 639
AcsI	RAATTY	2 cut(s)	190, 292
AfaI	GTAC	2 cut(s)	134, 692
AfiI	CCNNNNNNNGG	1 cut(s)	103
AflII	CTTAAG	1 cut(s)	386
AgsI	TTSAA	2 cut(s)	195, 497
AjnI	CCWGG	2 cut(s)	356, 660
AluBI	AGCT	5 cut(s)	31, 58, 164, 716, 786
AluI	AGCT	5 cut(s)	31, 58, 164, 716, 786
Alw26I	GTCTC	1 cut(s)	774
AlwI	GGATC	2 cut(s)	10, 503
AoxI	GGCC	3 cut(s)	141, 489, 639
ApeKI	GCWGC	4 cut(s)	55, 331, 713, 786
ApoI	RAATTY	2 cut(s)	190, 292
ArsI	GACNNNNNNTTYG	2 cut(s)	752, 784
AseI	ATTAAT	1 cut(s)	824
AspLEI	GCGC	1 cut(s)	526
AspS9I	GGNCC	5 cut(s)	213, 467, 489, 608, 763
AvaII	GGWCC	4 cut(s)	213, 467, 608, 763
BaeI	ACNNNNGTAYC	2 cut(s)	674, 707
BalI	TGGCCA	2 cut(s)	143, 641
BbvI	GCAGC	4 cut(s)	67, 318, 725, 773
BccI	CCATC	3 cut(s)	224, 577, 784
BciT130I	CCWGG	2 cut(s)	358, 662
BclI	TGATCA	1 cut(s)	832
BcoDI	GTCTC	1 cut(s)	774
BfaI	CTAG	3 cut(s)	161, 353, 458
BfrI	CTTAAG	1 cut(s)	386
BisI	GCNGC	4 cut(s)	56, 332, 714, 787
BlpI	GCTNAGC	1 cut(s)	239
BlsI	GCNGC	4 cut(s)	57, 333, 715, 788
Bme1390I	CCNGG	2 cut(s)	358, 662
Bme18I	GGWCC	4 cut(s)	213, 467, 608, 763
BmgT120I	GGNCC	5 cut(s)	213, 467, 489, 608, 763
BmiI	GGNNCC	3 cut(s)	469, 609, 667
BmrFI	CCNGG	2 cut(s)	358, 662
Bpu1102I	GCTNAGC	1 cut(s)	239
Bsa29I	ATCGAT	1 cut(s)	795
BsaBI	GATNNNNATC	1 cut(s)	513
BsaJI	CCNNGG	4 cut(s)	485, 636, 661, 694
BsaXI	ACNNNNNCTCC	4 cut(s)	432, 462, 702, 732
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	2 cut(s)	226, 766
Bse3DI	GCAATG	4 cut(s)	144, 324, 533, 561
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	2 cut(s)	358, 662
BseCI	ATCGAT	1 cut(s)	795
BseDI	CCNNGG	4 cut(s)	485, 636, 661, 694
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMI	GCAATG	4 cut(s)	144, 324, 533, 561
BseMII	CTCAG	1 cut(s)	230
BseNI	ACTGG	2 cut(s)	226, 766
BseRI	GAGGAG	1 cut(s)	762
BseXI	GCAGC	4 cut(s)	67, 318, 725, 773
BseYI	CCCAGC	1 cut(s)	68
BsgI	GTGCAG	2 cut(s)	74, 380
BshFI	GGCC	3 cut(s)	143, 491, 641
BshVI	ATCGAT	1 cut(s)	795
BslFI	GGGAC	3 cut(s)	433, 453, 621
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	774
BsmFI	GGGAC	3 cut(s)	433, 453, 621
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	3 cut(s)	143, 491, 641
Bsp143I	GATC	5 cut(s)	15, 423, 508, 792, 832
Bsp1720I	GCTNAGC	1 cut(s)	239
Bsp19I	CCATGG	1 cut(s)	485
BspACI	CCGC	1 cut(s)	19
BspANI	GGCC	3 cut(s)	143, 491, 641
BspCNI	CTCAG	1 cut(s)	231
BspDI	ATCGAT	1 cut(s)	795
BspLI	GGNNCC	3 cut(s)	469, 609, 667
BspPI	GGATC	2 cut(s)	10, 503
BspTI	CTTAAG	1 cut(s)	386
BsrDI	GCAATG	4 cut(s)	144, 324, 533, 561
BsrI	ACTGG	2 cut(s)	226, 766
BssECI	CCNNGG	4 cut(s)	485, 636, 661, 694
BssMI	GATC	5 cut(s)	15, 423, 508, 792, 832
BssT1I	CCWWGG	3 cut(s)	485, 636, 694
Bst2UI	CCWGG	2 cut(s)	358, 662
Bst4CI	ACNGT	2 cut(s)	433, 646
BstAFI	CTTAAG	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	1 cut(s)	239
BstDSI	CCRYGG	1 cut(s)	485
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	526
BstKTI	GATC	5 cut(s)	18, 426, 511, 795, 835
BstMAI	GTCTC	1 cut(s)	774
BstMBI	GATC	5 cut(s)	15, 423, 508, 792, 832
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 551
BstNI	CCWGG	2 cut(s)	358, 662
BstSCI	CCNGG	2 cut(s)	356, 660
BstV1I	GCAGC	4 cut(s)	67, 318, 725, 773
BstXI	CCANNNNNNTGG	1 cut(s)	649
Bsu15I	ATCGAT	1 cut(s)	795
BsuRI	GGCC	3 cut(s)	143, 491, 641
BsuTUI	ATCGAT	1 cut(s)	795
BtgI	CCRYGG	1 cut(s)	485
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	2 cut(s)	48, 219
Cac8I	GCNNGC	1 cut(s)	336
CfoI	GCGC	1 cut(s)	526
Cfr13I	GGNCC	5 cut(s)	213, 467, 489, 608, 763
ClaI	ATCGAT	1 cut(s)	795
Csp6I	GTAC	2 cut(s)	133, 691
CviAII	CATG	4 cut(s)	280, 415, 486, 790
CviQI	GTAC	2 cut(s)	133, 691
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	5 cut(s)	17, 425, 510, 794, 834
DpnII	GATC	5 cut(s)	15, 423, 508, 792, 832
EaeI	YGGCCR	2 cut(s)	141, 639
EciI	GGCGGA	1 cut(s)	8
Eco130I	CCWWGG	3 cut(s)	485, 636, 694
Eco47I	GGWCC	4 cut(s)	213, 467, 608, 763
EcoNI	CCTNNNNNAGG	1 cut(s)	101
EcoO109I	RGGNCCY	2 cut(s)	467, 608
EcoRI	GAATTC	2 cut(s)	190, 292
EcoRII	CCWGG	2 cut(s)	356, 660
EcoT14I	CCWWGG	3 cut(s)	485, 636, 694
ErhI	CCWWGG	3 cut(s)	485, 636, 694
FaeI	CATG	4 cut(s)	283, 418, 489, 793
FaiI	YATR	9 cut(s)	8, 66, 281, 329, 404, 416, 487, 579, 791
FaqI	GGGAC	3 cut(s)	433, 453, 621
FatI	CATG	4 cut(s)	279, 414, 485, 789
FbaI	TGATCA	1 cut(s)	832
FblI	GTMKAC	1 cut(s)	481
Fnu4HI	GCNGC	4 cut(s)	56, 332, 714, 787
Fsp4HI	GCNGC	4 cut(s)	56, 332, 714, 787
FspBI	CTAG	3 cut(s)	161, 353, 458
FspI	TGCGCA	1 cut(s)	525
GlaI	GCGC	1 cut(s)	525
GluI	GCNGC	4 cut(s)	56, 332, 714, 787
GsaI	CCCAGC	1 cut(s)	72
HaeIII	GGCC	3 cut(s)	143, 491, 641
HhaI	GCGC	1 cut(s)	526
Hin1II	CATG	4 cut(s)	283, 418, 489, 793
Hin6I	GCGC	1 cut(s)	524
HinP1I	GCGC	1 cut(s)	524
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	2 cut(s)	112, 454
Hpy166II	GTNNAC	3 cut(s)	133, 309, 482
Hpy188I	TCNGA	1 cut(s)	204
Hpy188III	TCNNGA	2 cut(s)	195, 451
Hpy8I	GTNNAC	3 cut(s)	133, 309, 482
HpyAV	CCTTC	3 cut(s)	97, 370, 592
HpyCH4III	ACNGT	2 cut(s)	433, 646
HpyCH4IV	ACGT	1 cut(s)	305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 551
HpyF3I	CTNAG	1 cut(s)	239
HpySE526I	ACGT	1 cut(s)	305
Hsp92II	CATG	4 cut(s)	283, 418, 489, 793
HspAI	GCGC	1 cut(s)	524
Ksp22I	TGATCA	1 cut(s)	832
Kzo9I	GATC	5 cut(s)	15, 423, 508, 792, 832
LmnI	GCTCC	3 cut(s)	169, 440, 710
Lsp1109I	GCAGC	4 cut(s)	67, 318, 725, 773
MaeI	CTAG	3 cut(s)	161, 353, 458
MaeII	ACGT	1 cut(s)	305
MalI	GATC	5 cut(s)	17, 425, 510, 794, 834
MboI	GATC	5 cut(s)	15, 423, 508, 792, 832
MboII	GAAGA	2 cut(s)	301, 509
MfeI	CAATTG	1 cut(s)	686
MlsI	TGGCCA	2 cut(s)	143, 641
MluCI	AATT	4 cut(s)	190, 292, 504, 686
MluNI	TGGCCA	2 cut(s)	143, 641
MlyI	GAGTC	2 cut(s)	121, 448
MnlI	CCTC	8 cut(s)	180, 210, 281, 458, 481, 522, 560, 783
Mox20I	TGGCCA	2 cut(s)	143, 641
MscI	TGGCCA	2 cut(s)	143, 641
MseI	TTAA	4 cut(s)	387, 630, 824, 844
MslI	CAYNNNNRTG	2 cut(s)	284, 647
Msp20I	TGGCCA	2 cut(s)	143, 641
MspA1I	CMGCKG	1 cut(s)	716
MspCI	CTTAAG	1 cut(s)	386
MspR9I	CCNGG	2 cut(s)	358, 662
MunI	CAATTG	1 cut(s)	686
Mva1269I	GAATGC	1 cut(s)	173
MvaI	CCWGG	2 cut(s)	358, 662
MwoI	GCNNNNNNNGC	2 cut(s)	170, 551
NcoI	CCATGG	1 cut(s)	485
NdeII	GATC	5 cut(s)	15, 423, 508, 792, 832
NlaIII	CATG	4 cut(s)	283, 418, 489, 793
NlaIV	GGNNCC	3 cut(s)	469, 609, 667
NmeAIII	GCCGAG	1 cut(s)	602
NsbI	TGCGCA	1 cut(s)	525
PcsI	WCGNNNNNNNCGW	1 cut(s)	302
PctI	GAATGC	1 cut(s)	173
PflFI	GACNNNGTC	1 cut(s)	211
PkrI	GCNGC	4 cut(s)	57, 333, 715, 788
PleI	GAGTC	2 cut(s)	120, 448
PpsI	GAGTC	2 cut(s)	120, 448
PpuMI	RGGWCCY	2 cut(s)	467, 608
PshBI	ATTAAT	1 cut(s)	824
Psp1406I	AACGTT	1 cut(s)	305
Psp5II	RGGWCCY	2 cut(s)	467, 608
Psp6I	CCWGG	2 cut(s)	356, 660
PspFI	CCCAGC	1 cut(s)	68
PspGI	CCWGG	2 cut(s)	356, 660
PspN4I	GGNNCC	3 cut(s)	469, 609, 667
PspPI	GGNCC	5 cut(s)	213, 467, 489, 608, 763
PspPPI	RGGWCCY	2 cut(s)	467, 608
PsrI	GAACNNNNNNTAC	2 cut(s)	260, 292
PsyI	GACNNNGTC	1 cut(s)	211
PvuII	CAGCTG	1 cut(s)	716
RsaI	GTAC	2 cut(s)	134, 692
RsaNI	GTAC	2 cut(s)	133, 691
RseI	CAYNNNNRTG	2 cut(s)	284, 647
SaqAI	TTAA	4 cut(s)	387, 630, 824, 844
SatI	GCNGC	4 cut(s)	56, 332, 714, 787
Sau3AI	GATC	5 cut(s)	15, 423, 508, 792, 832
Sau96I	GGNCC	5 cut(s)	213, 467, 489, 608, 763
SchI	GAGTC	2 cut(s)	121, 448
ScrFI	CCNGG	2 cut(s)	358, 662
SinI	GGWCC	4 cut(s)	213, 467, 608, 763
SmiMI	CAYNNNNRTG	2 cut(s)	284, 647
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	4 cut(s)	190, 292, 504, 686
SsiI	CCGC	1 cut(s)	19
SspMI	CTAG	3 cut(s)	161, 353, 458
StyD4I	CCNGG	2 cut(s)	356, 660
StyI	CCWWGG	3 cut(s)	485, 636, 694
TaaI	ACNGT	2 cut(s)	433, 646
TaiI	ACGT	1 cut(s)	308
TaqI	TCGA	4 cut(s)	77, 249, 296, 795
TasI	AATT	4 cut(s)	190, 292, 504, 686
Tru1I	TTAA	4 cut(s)	387, 630, 824, 844
Tru9I	TTAA	4 cut(s)	387, 630, 824, 844
TscAI	CASTG	2 cut(s)	48, 226
TseI	GCWGC	4 cut(s)	55, 331, 713, 786
TspDTI	ATGAA	4 cut(s)	115, 166, 302, 813
TspRI	CASTG	2 cut(s)	48, 226
Tth111I	GACNNNGTC	1 cut(s)	211
Vha464I	CTTAAG	1 cut(s)	386
VpaK11BI	GGWCC	4 cut(s)	213, 467, 608, 763
VspI	ATTAAT	1 cut(s)	824
XagI	CCTNNNNNAGG	1 cut(s)	101
XapI	RAATTY	2 cut(s)	190, 292
XmiI	GTMKAC	1 cut(s)	481
XspI	CTAG	3 cut(s)	161, 353, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.