Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Forward (+)

28638122 .. 28638517

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG153100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGGACTGGTTGTGAAGAAGAAGGGACCAGTTTTCTACTCGGCCTTTAACCCCTTGGCCACTCTGCTTGTGGCAATTTTGGGGTCATTTTTTCTGGCAGAACAGTTGTATACTGGGAGTCTCATCGGAGCTGTAACCATTGTGGGAGGCCTCTATCTTGTTCTTTGGGGAAAAGCAAGAGATCAGCCTCCCTCCGATTCAAAGAAGGCCAATGTGGAAGAACCAACTGGAACCCCAGCGCAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

82

Amino Acids

8.65

Weight (kDa)

9.1

Isoelectric Point (pI)

30.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	110
AcoI	YGGCCR	1 cut(s)	57
AgsI	TTSAA	1 cut(s)	201
AluBI	AGCT	1 cut(s)	131
AluI	AGCT	1 cut(s)	131
Alw26I	GTCTC	1 cut(s)	125
AoxI	GGCC	4 cut(s)	42, 57, 148, 207
AspLEI	GCGC	1 cut(s)	241
AspS9I	GGNCC	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	26
BalI	TGGCCA	1 cut(s)	59
BcoDI	GTCTC	1 cut(s)	125
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	2 cut(s)	27, 232
BmrI	ACTGGG	1 cut(s)	123
BmuI	ACTGGG	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	54
Bse1I	ACTGG	4 cut(s)	12, 29, 118, 232
BseDI	CCNNGG	1 cut(s)	54
BseNI	ACTGG	4 cut(s)	12, 29, 118, 232
BseYI	CCCAGC	1 cut(s)	235
BshFI	GGCC	4 cut(s)	44, 59, 150, 209
BslFI	GGGAC	2 cut(s)	18, 39
BsmAI	GTCTC	1 cut(s)	125
BsmFI	GGGAC	2 cut(s)	18, 39
BsnI	GGCC	4 cut(s)	44, 59, 150, 209
Bsp143I	GATC	1 cut(s)	181
BspANI	GGCC	4 cut(s)	44, 59, 150, 209
BspLI	GGNNCC	2 cut(s)	27, 232
BsrI	ACTGG	4 cut(s)	12, 29, 118, 232
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	1 cut(s)	181
BssNAI	GTATAC	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	54
Bst1107I	GTATAC	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	241
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	1 cut(s)	181
BstZ17I	GTATAC	1 cut(s)	111
BsuRI	GGCC	4 cut(s)	44, 59, 150, 209
CfoI	GCGC	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	26
CspCI	CAANNNNNGTGG	2 cut(s)	49, 84
CviJI	RGCY	6 cut(s)	44, 59, 131, 150, 187, 209
CviKI_1	RGCY	6 cut(s)	44, 59, 131, 150, 187, 209
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
EaeI	YGGCCR	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	54
Eco147I	AGGCCT	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	26
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaiI	YATR	1 cut(s)	111
FaqI	GGGAC	2 cut(s)	18, 39
FblI	GTMKAC	1 cut(s)	110
GlaI	GCGC	1 cut(s)	240
GsaI	CCCAGC	1 cut(s)	239
HaeIII	GGCC	4 cut(s)	44, 59, 150, 209
HhaI	GCGC	1 cut(s)	241
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HinfI	GANTC	2 cut(s)	118, 197
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	2 cut(s)	128, 196
Hpy8I	GTNNAC	1 cut(s)	111
HpyAV	CCTTC	2 cut(s)	16, 199
HpyCH4III	ACNGT	1 cut(s)	105
HspAI	GCGC	1 cut(s)	239
Kzo9I	GATC	1 cut(s)	181
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	4 cut(s)	42, 80, 99, 213
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	3 cut(s)	28, 31, 230
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	1 cut(s)	75
MluNI	TGGCCA	1 cut(s)	59
MlyI	GAGTC	1 cut(s)	127
MnlI	CCTC	4 cut(s)	140, 161, 198, 202
Mox20I	TGGCCA	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	2 cut(s)	48, 247
Msp20I	TGGCCA	1 cut(s)	59
NdeII	GATC	1 cut(s)	181
NlaIV	GGNNCC	2 cut(s)	27, 232
NmeAIII	GCCGAG	1 cut(s)	20
PceI	AGGCCT	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	197
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
PspFI	CCCAGC	1 cut(s)	235
PspN4I	GGNNCC	2 cut(s)	27, 232
PspPI	GGNCC	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	48, 247
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	1 cut(s)	26
SchI	GAGTC	1 cut(s)	127
SetI	ASST	1 cut(s)	133
SinI	GGWCC	1 cut(s)	26
Sse9I	AATT	1 cut(s)	75
SseBI	AGGCCT	1 cut(s)	150
StuI	AGGCCT	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	105
TasI	AATT	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	2 cut(s)	48, 247
Tru9I	TTAA	2 cut(s)	48, 247
VpaK11BI	GGWCC	1 cut(s)	26
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67
XmiI	GTMKAC	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.