Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Reverse (-)

17369555 .. 17371154

Gene Structure 1600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g21820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGGGTTGATCCGCCAAGCAAAGCTTGTGGTAGCTGTGATTTTGGTGCAGCTTGGGTATGCTGGGCTGAACATAATCTCTGTGTTTGCTCTAAAGAAGGGAATGAGTTCTTACACATTCATCGTGTATCGAATGGCCATTGCCACTATTGTTCTAGCTCCCTTTGCATACATTTTTGACAGGAATTCAAGGCCTCCGATGACTTGGTCTATCATTGCAAAGATAATGTTGCTGAGCCTTTTCGACCCTGTCCTTGACCAGAACCTCTGCTACATGGGAGTGAAGCATTCAAATGCGACCTTCACTTCTGCAATGTGCAATATGCTGCCTGCTTTTGCATTTTGTCTAGCCTGGATTTTTAGGTTTGAGAAGGTTAGTCTTAAAAAACTGCACAGCATAGCAAAGGTGACGGGGACGATCATCACAGTTGGGGGAGCAATAATCTTGACCCTAGTTAAAGGTCCCCCTTTGTGTCTACCATGGGCTAATGAAGAACCAATTGATCATCATCAATCTGCGCAATGCTATTCGGCTCAGACAGACTTTGTGAAAGGAGCTCTATTCATCACATTAGCATGTTTCTGCTGGTCTTGGTTTGTCATTTTGCAAGCAATTACCTTAAGATCCTACCCTTGTCAGCTCTCTCTCACAGCAATGATATGCTTTTGGGGTACGGTGGAAGGAGCGATACTGGCTTTTGTAGTTGAAAGGGGACATAGTGGAGTCTGGTCCATACAATTCAACATCAAACTTATAGCAGCATTTTATGGGGCAATGCAATCCAGTGTTACTTATTATGTGATGGGAATGGTAGTGAAGGAAAAGGGACCTGTTTTTTACTCGGCTTTTAATCCCTTGGCCACAGTAATGGTTGCAGTCCTGGGTTCCTTTGTTTTATCAGAACAATTGTACCTTGGGAGTGTTATTGGAGCGGCTGTAATCGTCATTGGTCTATATCTTGTTCTCTGGGGAAAAGCAAAGGACCAATCTCCTCCATCACAGTGTTGCATGATCGATGAAGTAGCACCAGAAACACAAAGATTAATAGATGATCAACAGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

355

Amino Acids

39.0

Weight (kDa)

8.66

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	10 - 140	5.3e-13	EamA-like transporter family
EamA	PF00892	184 - 322	3e-09	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	519
AccBSI	CCGCTC	1 cut(s)	932
AccI	GTMKAC	1 cut(s)	475
AciI	CCGC	2 cut(s)	13, 932
AclWI	GGATC	2 cut(s)	4, 618
AcoI	YGGCCR	2 cut(s)	135, 858
AcsI	RAATTY	1 cut(s)	184
AfaI	GTAC	2 cut(s)	673, 911
AflII	CTTAAG	1 cut(s)	619
AgsI	TTSAA	4 cut(s)	189, 291, 707, 742
AjnI	CCWGG	2 cut(s)	350, 879
AluBI	AGCT	6 cut(s)	25, 35, 52, 158, 557, 640
AluI	AGCT	6 cut(s)	25, 35, 52, 158, 557, 640
Alw21I	GWGCWC	1 cut(s)	559
AlwI	GGATC	2 cut(s)	4, 618
AoxI	GGCC	3 cut(s)	135, 191, 858
ApeKI	GCWGC	3 cut(s)	49, 325, 758
ApoI	RAATTY	1 cut(s)	184
AseI	ATTAAT	1 cut(s)	1043
Asp700I	GAANNNNTTC	1 cut(s)	106
AspLEI	GCGC	1 cut(s)	520
AspS9I	GGNCC	4 cut(s)	461, 729, 827, 982
AsuHPI	GGTGA	1 cut(s)	418
AvaII	GGWCC	4 cut(s)	461, 729, 827, 982
BaeI	ACNNNNGTAYC	2 cut(s)	893, 926
BalI	TGGCCA	2 cut(s)	137, 860
BanII	GRGCYC	1 cut(s)	559
BarI	GAAGNNNNNNTAC	2 cut(s)	672, 704
Bbv12I	GWGCWC	1 cut(s)	559
BbvI	GCAGC	3 cut(s)	61, 312, 770
BccI	CCATC	2 cut(s)	796, 1003
BciT130I	CCWGG	2 cut(s)	352, 881
BclI	TGATCA	2 cut(s)	502, 1051
BfaI	CTAG	3 cut(s)	155, 347, 452
BfrI	CTTAAG	1 cut(s)	619
BisI	GCNGC	4 cut(s)	50, 326, 759, 933
BlpI	GCTNAGC	1 cut(s)	233
BlsI	GCNGC	4 cut(s)	51, 327, 760, 934
Bme1390I	CCNGG	2 cut(s)	352, 881
Bme18I	GGWCC	4 cut(s)	461, 729, 827, 982
BmgT120I	GGNCC	4 cut(s)	461, 729, 827, 982
BmiI	GGNNCC	3 cut(s)	463, 828, 886
BmrFI	CCNGG	2 cut(s)	352, 881
Bpu1102I	GCTNAGC	1 cut(s)	233
Bsa29I	ATCGAT	1 cut(s)	1014
BsaBI	GATNNNNATC	1 cut(s)	507
BsaJI	CCNNGG	4 cut(s)	479, 855, 880, 913
BsaXI	ACNNNNNCTCC	2 cut(s)	921, 951
Bse1I	ACTGG	2 cut(s)	696, 783
Bse3DI	GCAATG	6 cut(s)	138, 213, 318, 527, 660, 780
Bse8I	GATNNNNATC	1 cut(s)	507
BseBI	CCWGG	2 cut(s)	352, 881
BseCI	ATCGAT	1 cut(s)	1014
BseDI	CCNNGG	4 cut(s)	479, 855, 880, 913
BseJI	GATNNNNATC	1 cut(s)	507
BseMI	GCAATG	6 cut(s)	138, 213, 318, 527, 660, 780
BseMII	CTCAG	2 cut(s)	224, 548
BseNI	ACTGG	2 cut(s)	696, 783
BseRI	GAGGAG	1 cut(s)	981
BseXI	GCAGC	3 cut(s)	61, 312, 770
BseYI	CCCAGC	1 cut(s)	62
BsgI	GTGCAG	2 cut(s)	68, 374
BshFI	GGCC	3 cut(s)	137, 193, 860
BshVI	ATCGAT	1 cut(s)	1014
BsiHKAI	GWGCWC	1 cut(s)	559
BslFI	GGGAC	4 cut(s)	427, 447, 726, 840
BsmFI	GGGAC	4 cut(s)	427, 447, 726, 840
BsmI	GAATGC	1 cut(s)	286
BsnI	GGCC	3 cut(s)	137, 193, 860
Bsp1286I	GDGCHC	1 cut(s)	559
Bsp143I	GATC	6 cut(s)	9, 417, 502, 623, 1011, 1051
Bsp1720I	GCTNAGC	1 cut(s)	233
Bsp19I	CCATGG	1 cut(s)	479
BspACI	CCGC	2 cut(s)	13, 932
BspANI	GGCC	3 cut(s)	137, 193, 860
BspCNI	CTCAG	2 cut(s)	225, 547
BspDI	ATCGAT	1 cut(s)	1014
BspLI	GGNNCC	3 cut(s)	463, 828, 886
BspPI	GGATC	2 cut(s)	4, 618
BspTI	CTTAAG	1 cut(s)	619
BsrBI	CCGCTC	1 cut(s)	932
BsrDI	GCAATG	6 cut(s)	138, 213, 318, 527, 660, 780
BsrI	ACTGG	2 cut(s)	696, 783
BssECI	CCNNGG	4 cut(s)	479, 855, 880, 913
BssMI	GATC	6 cut(s)	9, 417, 502, 623, 1011, 1051
BssT1I	CCWWGG	3 cut(s)	479, 855, 913
Bst2UI	CCWGG	2 cut(s)	352, 881
Bst4CI	ACNGT	5 cut(s)	427, 676, 865, 1002, 1059
BstAFI	CTTAAG	1 cut(s)	619
BstC8I	GCNNGC	2 cut(s)	330, 609
BstDEI	CTNAG	2 cut(s)	233, 534
BstDSI	CCRYGG	1 cut(s)	479
BstHHI	GCGC	1 cut(s)	520
BstKTI	GATC	6 cut(s)	12, 420, 505, 626, 1014, 1054
BstMBI	GATC	6 cut(s)	9, 417, 502, 623, 1011, 1051
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 692
BstNI	CCWGG	2 cut(s)	352, 881
BstNSI	RCATGY	1 cut(s)	579
BstSCI	CCNGG	2 cut(s)	350, 879
BstV1I	GCAGC	3 cut(s)	61, 312, 770
BstX2I	RGATCY	1 cut(s)	623
BstXI	CCANNNNNNTGG	1 cut(s)	868
BstYI	RGATCY	1 cut(s)	623
Bsu15I	ATCGAT	1 cut(s)	1014
BsuRI	GGCC	3 cut(s)	137, 193, 860
BsuTUI	ATCGAT	1 cut(s)	1014
BtgI	CCRYGG	1 cut(s)	479
BtsIMutI	CAGTG	3 cut(s)	790, 1007, 1064
Cac8I	GCNNGC	2 cut(s)	330, 609
CfoI	GCGC	1 cut(s)	520
Cfr13I	GGNCC	4 cut(s)	461, 729, 827, 982
ClaI	ATCGAT	1 cut(s)	1014
Csp6I	GTAC	2 cut(s)	672, 910
CspCI	CAANNNNNGTGG	2 cut(s)	9, 44
CviAII	CATG	4 cut(s)	274, 480, 576, 1009
CviQI	GTAC	2 cut(s)	672, 910
DdeI	CTNAG	2 cut(s)	233, 534
DpnI	GATC	6 cut(s)	11, 419, 504, 625, 1013, 1053
DpnII	GATC	6 cut(s)	9, 417, 502, 623, 1011, 1051
EaeI	YGGCCR	2 cut(s)	135, 858
Ecl136II	GAGCTC	1 cut(s)	557
Eco130I	CCWWGG	3 cut(s)	479, 855, 913
Eco147I	AGGCCT	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	559
Eco47I	GGWCC	4 cut(s)	461, 729, 827, 982
Eco53kI	GAGCTC	1 cut(s)	557
EcoICRI	GAGCTC	1 cut(s)	557
EcoO109I	RGGNCCY	2 cut(s)	461, 827
EcoRI	GAATTC	1 cut(s)	184
EcoRII	CCWGG	2 cut(s)	350, 879
EcoT14I	CCWWGG	3 cut(s)	479, 855, 913
EcoT38I	GRGCYC	1 cut(s)	559
ErhI	CCWWGG	3 cut(s)	479, 855, 913
FaeI	CATG	4 cut(s)	277, 483, 579, 1012
FalI	AAGNNNNNCTT	2 cut(s)	9, 41
FaqI	GGGAC	4 cut(s)	427, 447, 726, 840
FatI	CATG	4 cut(s)	273, 479, 575, 1008
FbaI	TGATCA	2 cut(s)	502, 1051
FblI	GTMKAC	1 cut(s)	475
Fnu4HI	GCNGC	4 cut(s)	50, 326, 759, 933
FriOI	GRGCYC	1 cut(s)	559
Fsp4HI	GCNGC	4 cut(s)	50, 326, 759, 933
FspBI	CTAG	3 cut(s)	155, 347, 452
FspI	TGCGCA	1 cut(s)	519
GlaI	GCGC	1 cut(s)	519
GluI	GCNGC	4 cut(s)	50, 326, 759, 933
GsaI	CCCAGC	1 cut(s)	66
HaeIII	GGCC	3 cut(s)	137, 193, 860
HhaI	GCGC	1 cut(s)	520
Hin1II	CATG	4 cut(s)	277, 483, 579, 1012
Hin6I	GCGC	1 cut(s)	518
HinP1I	GCGC	1 cut(s)	518
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	1 cut(s)	723
HphI	GGTGA	1 cut(s)	418
Hpy166II	GTNNAC	1 cut(s)	476
Hpy188I	TCNGA	3 cut(s)	198, 537, 901
Hpy188III	TCNNGA	1 cut(s)	445
Hpy8I	GTNNAC	1 cut(s)	476
HpyAV	CCTTC	5 cut(s)	91, 310, 364, 674, 811
HpyCH4III	ACNGT	5 cut(s)	427, 676, 865, 1002, 1059
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 692
HpyF3I	CTNAG	2 cut(s)	233, 534
Hsp92II	CATG	4 cut(s)	277, 483, 579, 1012
HspAI	GCGC	1 cut(s)	518
Ksp22I	TGATCA	2 cut(s)	502, 1051
Kzo9I	GATC	6 cut(s)	9, 417, 502, 623, 1011, 1051
LmnI	GCTCC	5 cut(s)	163, 434, 554, 683, 929
Lsp1109I	GCAGC	3 cut(s)	61, 312, 770
MaeI	CTAG	3 cut(s)	155, 347, 452
MaeIII	GTNAC	2 cut(s)	406, 787
MalI	GATC	6 cut(s)	11, 419, 504, 625, 1013, 1053
MbiI	CCGCTC	1 cut(s)	932
MboI	GATC	6 cut(s)	9, 417, 502, 623, 1011, 1051
MboII	GAAGA	1 cut(s)	503
MfeI	CAATTG	2 cut(s)	498, 905
MflI	RGATCY	1 cut(s)	623
MhlI	GDGCHC	1 cut(s)	559
MlsI	TGGCCA	2 cut(s)	137, 860
MluCI	AATT	5 cut(s)	184, 498, 612, 737, 905
MluNI	TGGCCA	2 cut(s)	137, 860
MlyI	GAGTC	1 cut(s)	732
MnlI	CCTC	3 cut(s)	204, 275, 1002
Mox20I	TGGCCA	2 cut(s)	137, 860
MroXI	GAANNNNTTC	1 cut(s)	106
MscI	TGGCCA	2 cut(s)	137, 860
MseI	TTAA	5 cut(s)	381, 456, 620, 849, 1043
MslI	CAYNNNNRTG	6 cut(s)	278, 291, 574, 653, 866, 1000
Msp20I	TGGCCA	2 cut(s)	137, 860
MspCI	CTTAAG	1 cut(s)	619
MspR9I	CCNGG	2 cut(s)	352, 881
MunI	CAATTG	2 cut(s)	498, 905
Mva1269I	GAATGC	1 cut(s)	286
MvaI	CCWGG	2 cut(s)	352, 881
MwoI	GCNNNNNNNGC	2 cut(s)	164, 692
NcoI	CCATGG	1 cut(s)	479
NdeII	GATC	6 cut(s)	9, 417, 502, 623, 1011, 1051
NlaIII	CATG	4 cut(s)	277, 483, 579, 1012
NlaIV	GGNNCC	3 cut(s)	463, 828, 886
NmeAIII	GCCGAG	1 cut(s)	821
NmuCI	GTSAC	1 cut(s)	406
NsbI	TGCGCA	1 cut(s)	519
NspI	RCATGY	1 cut(s)	579
PceI	AGGCCT	1 cut(s)	193
PctI	GAATGC	1 cut(s)	286
PdmI	GAANNNNTTC	1 cut(s)	106
PflFI	GACNNNGTC	2 cut(s)	205, 248
PkrI	GCNGC	4 cut(s)	51, 327, 760, 934
PleI	GAGTC	1 cut(s)	731
PpsI	GAGTC	1 cut(s)	731
PpuMI	RGGWCCY	2 cut(s)	461, 827
PshBI	ATTAAT	1 cut(s)	1043
Psp124BI	GAGCTC	1 cut(s)	559
Psp5II	RGGWCCY	2 cut(s)	461, 827
Psp6I	CCWGG	2 cut(s)	350, 879
PspFI	CCCAGC	1 cut(s)	62
PspGI	CCWGG	2 cut(s)	350, 879
PspN4I	GGNNCC	3 cut(s)	463, 828, 886
PspPI	GGNCC	4 cut(s)	461, 729, 827, 982
PspPPI	RGGWCCY	2 cut(s)	461, 827
PsrI	GAACNNNNNNTAC	2 cut(s)	254, 286
PsuI	RGATCY	1 cut(s)	623
PsyI	GACNNNGTC	2 cut(s)	205, 248
RsaI	GTAC	2 cut(s)	673, 911
RsaNI	GTAC	2 cut(s)	672, 910
RseI	CAYNNNNRTG	6 cut(s)	278, 291, 574, 653, 866, 1000
SacI	GAGCTC	1 cut(s)	559
SaqAI	TTAA	5 cut(s)	381, 456, 620, 849, 1043
SatI	GCNGC	4 cut(s)	50, 326, 759, 933
Sau3AI	GATC	6 cut(s)	9, 417, 502, 623, 1011, 1051
Sau96I	GGNCC	4 cut(s)	461, 729, 827, 982
SchI	GAGTC	1 cut(s)	732
ScrFI	CCNGG	2 cut(s)	352, 881
SduI	GDGCHC	1 cut(s)	559
SinI	GGWCC	4 cut(s)	461, 729, 827, 982
SmiMI	CAYNNNNRTG	6 cut(s)	278, 291, 574, 653, 866, 1000
SmlI	CTYRAG	1 cut(s)	619
SmoI	CTYRAG	1 cut(s)	619
Sse9I	AATT	5 cut(s)	184, 498, 612, 737, 905
SseBI	AGGCCT	1 cut(s)	193
SsiI	CCGC	2 cut(s)	13, 932
SspMI	CTAG	3 cut(s)	155, 347, 452
SstI	GAGCTC	1 cut(s)	559
StuI	AGGCCT	1 cut(s)	193
StyD4I	CCNGG	2 cut(s)	350, 879
StyI	CCWWGG	3 cut(s)	479, 855, 913
TaaI	ACNGT	5 cut(s)	427, 676, 865, 1002, 1059
TaqI	TCGA	3 cut(s)	130, 243, 1014
TasI	AATT	5 cut(s)	184, 498, 612, 737, 905
TauI	GCSGC	1 cut(s)	935
Tru1I	TTAA	5 cut(s)	381, 456, 620, 849, 1043
Tru9I	TTAA	5 cut(s)	381, 456, 620, 849, 1043
TscAI	CASTG	3 cut(s)	790, 1007, 1064
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	3 cut(s)	49, 325, 758
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	4 cut(s)	109, 504, 553, 1032
TspRI	CASTG	3 cut(s)	790, 1007, 1064
Tth111I	GACNNNGTC	2 cut(s)	205, 248
Vha464I	CTTAAG	1 cut(s)	619
VpaK11BI	GGWCC	4 cut(s)	461, 729, 827, 982
VspI	ATTAAT	1 cut(s)	1043
XapI	RAATTY	1 cut(s)	184
XceI	RCATGY	1 cut(s)	579
XmiI	GTMKAC	1 cut(s)	475
XmnI	GAANNNNTTC	1 cut(s)	106
XspI	CTAG	3 cut(s)	155, 347, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.