Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003987.1

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Forward (+)

33365 .. 34855

Gene Structure 1491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003987.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

atgactgcaattcttgtcattgcagtgtgttttgttcaagccttgtatgcaggcctttccatcatctcattccttgcactaaagcagggcatgagccactacacctttgtggtgtataggatggccattgcaactgccttggcaattccattggcatggtatatagagagacattctaggcctacaatgaccatcaaggtcatggcaaagatcatgctgctaagcatgtttgaccctgtaatggaccaaaacttatactatgtgggaatgaagaactccaatgccacattcacatcggccatgtgcaacatgcttccggtgtttgcgtttttcatggcctgggttttcaggctggagaatgtggactgcagacacccgagaggattgaccaaggttgtaggaaccttggttactgtggtaggagcaattctccttaccatggtcaaggggccttccctcaacttgtcatgggcaagggaccacgacaaaaatcattcttcagcgcccaaagtcaagggtgctctcttcctaacactagcctgcttctgctggtcctgtttcataatcctgcaagccaatgtactcaagtcctacccctgcaagctctctctcacggctttgatttgcttctggggtatggtggaaggagcagtggtggctgttgtggttgaaagggggaatttggaagcatggtccatacacttggacttgaagttgctcgcagctgtttatggggctcttgtatcgggggctgcatattatgtcatgggactggttgtgaagaagaagggaccagttttctactcggcctttaaccccttggccactctacttgtggcgattttgggctcattttttctgcatgaacaattgtatactgggagtctcatcggagctgtaaccattgtgggaggcctctatcttgttctttggggaaaagcaagagatcagcctccctccgattcaaagaatgccaatgtggaagaaccaactggaaccccagcaatagacgatcgtgaagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

341

Amino Acids

37.35

Weight (kDa)

9.03

Isoelectric Point (pI)

24.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	875
AcoI	YGGCCR	3 cut(s)	123, 297, 822
AcsI	RAATTY	1 cut(s)	679
AcuI	CTGAAG	1 cut(s)	483
AfaI	GTAC	1 cut(s)	582
AfiI	CCNNNNNNNGG	2 cut(s)	241, 439
AgsI	TTSAA	4 cut(s)	38, 671, 712, 966
AjnI	CCWGG	1 cut(s)	338
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AleI	CACNNNNGTG	1 cut(s)	107
AluBI	AGCT	3 cut(s)	604, 725, 896
AluI	AGCT	3 cut(s)	604, 725, 896
Alw21I	GWGCWC	1 cut(s)	523
Alw26I	GTCTC	2 cut(s)	163, 890
Ama87I	CYCGRG	1 cut(s)	376
AoxI	GGCC	9 cut(s)	52, 123, 179, 297, 336, 449, 807, 822, 913
ApeKI	GCWGC	3 cut(s)	217, 722, 752
ApoI	RAATTY	1 cut(s)	679
AspLEI	GCGC	1 cut(s)	505
AspS9I	GGNCC	6 cut(s)	244, 449, 478, 552, 693, 791
AvaI	CYCGRG	1 cut(s)	376
AvaII	GGWCC	5 cut(s)	244, 478, 552, 693, 791
BalI	TGGCCA	2 cut(s)	125, 824
BanII	GRGCYC	2 cut(s)	739, 851
Bbv12I	GWGCWC	1 cut(s)	523
BbvI	GCAGC	3 cut(s)	204, 734, 739
BccI	CCATC	3 cut(s)	68, 115, 200
BceAI	ACGGC	1 cut(s)	630
BciT130I	CCWGG	1 cut(s)	340
BcoDI	GTCTC	2 cut(s)	163, 890
BfaI	CTAG	2 cut(s)	177, 536
BfmI	CTRYAG	1 cut(s)	367
BfoI	RGCGCY	1 cut(s)	506
BisI	GCNGC	3 cut(s)	218, 723, 753
BlpI	GCTNAGC	1 cut(s)	221
BlsI	GCNGC	3 cut(s)	219, 724, 754
Bme1390I	CCNGG	1 cut(s)	340
Bme18I	GGWCC	5 cut(s)	244, 478, 552, 693, 791
BmeT110I	CYCGRG	1 cut(s)	376
BmgT120I	GGNCC	6 cut(s)	244, 449, 478, 552, 693, 791
BmiI	GGNNCC	5 cut(s)	403, 450, 479, 792, 997
BmrFI	CCNGG	1 cut(s)	340
BmrI	ACTGGG	1 cut(s)	888
BmuI	ACTGGG	1 cut(s)	888
BplI	GAGNNNNNCTC	2 cut(s)	414, 446
BpmI	CTGGAG	1 cut(s)	374
Bpu1102I	GCTNAGC	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	569
BsaJI	CCNNGG	6 cut(s)	138, 339, 390, 405, 438, 819
BsaWI	WCCGGW	1 cut(s)	316
BsaXI	ACNNNNNCTCC	2 cut(s)	639, 669
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 439
Bse1I	ACTGG	4 cut(s)	777, 794, 883, 997
Bse3DI	GCAATG	2 cut(s)	18, 126
BseBI	CCWGG	1 cut(s)	340
BseDI	CCNNGG	6 cut(s)	138, 339, 390, 405, 438, 819
BseGI	GGATG	1 cut(s)	126
BseLI	CCNNNNNNNGG	2 cut(s)	241, 439
BseMI	GCAATG	2 cut(s)	18, 126
BseNI	ACTGG	4 cut(s)	777, 794, 883, 997
BseXI	GCAGC	3 cut(s)	204, 734, 739
BseYI	CCCAGC	1 cut(s)	1000
Bsh1285I	CGRYCG	1 cut(s)	1015
BshFI	GGCC	9 cut(s)	54, 125, 181, 299, 338, 451, 809, 824, 915
BsiEI	CGRYCG	1 cut(s)	1015
BsiHKAI	GWGCWC	1 cut(s)	523
BsiHKCI	CYCGRG	1 cut(s)	376
BsiSI	CCGG	1 cut(s)	317
BslFI	GGGAC	3 cut(s)	491, 783, 804
BslI	CCNNNNNNNGG	2 cut(s)	241, 439
BsmAI	GTCTC	2 cut(s)	163, 890
BsmFI	GGGAC	3 cut(s)	491, 783, 804
BsmI	GAATGC	1 cut(s)	976
BsnI	GGCC	9 cut(s)	54, 125, 181, 299, 338, 451, 809, 824, 915
BsoBI	CYCGRG	1 cut(s)	376
Bsp1286I	GDGCHC	3 cut(s)	523, 739, 851
Bsp143I	GATC	3 cut(s)	210, 946, 1012
Bsp1720I	GCTNAGC	1 cut(s)	221
Bsp19I	CCATGG	1 cut(s)	438
BspANI	GGCC	9 cut(s)	54, 125, 181, 299, 338, 451, 809, 824, 915
BspLI	GGNNCC	5 cut(s)	403, 450, 479, 792, 997
BspMAI	CTGCAG	1 cut(s)	371
BsrDI	GCAATG	2 cut(s)	18, 126
BsrI	ACTGG	4 cut(s)	777, 794, 883, 997
BssECI	CCNNGG	6 cut(s)	138, 339, 390, 405, 438, 819
BssMI	GATC	3 cut(s)	210, 946, 1012
BssNAI	GTATAC	1 cut(s)	876
BssT1I	CCWWGG	5 cut(s)	138, 390, 405, 438, 819
Bst1107I	GTATAC	1 cut(s)	876
Bst2UI	CCWGG	1 cut(s)	340
Bst4CI	ACNGT	1 cut(s)	415
Bst6I	CTCTTC	1 cut(s)	530
BstC8I	GCNNGC	5 cut(s)	52, 541, 573, 602, 720
BstDEI	CTNAG	1 cut(s)	221
BstDSI	CCRYGG	1 cut(s)	438
BstF5I	GGATG	1 cut(s)	126
BstH2I	RGCGCY	1 cut(s)	506
BstHHI	GCGC	1 cut(s)	505
BstKTI	GATC	3 cut(s)	213, 949, 1015
BstMAI	GTCTC	2 cut(s)	163, 890
BstMBI	GATC	3 cut(s)	210, 946, 1012
BstMCI	CGRYCG	1 cut(s)	1015
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 656
BstNI	CCWGG	1 cut(s)	340
BstNSI	RCATGY	2 cut(s)	229, 313
BstSCI	CCNGG	1 cut(s)	338
BstSFI	CTRYAG	1 cut(s)	367
BstV1I	GCAGC	3 cut(s)	204, 734, 739
BstXI	CCANNNNNNTGG	2 cut(s)	156, 703
BstZ17I	GTATAC	1 cut(s)	876
BsuRI	GGCC	9 cut(s)	54, 125, 181, 299, 338, 451, 809, 824, 915
BtgI	CCRYGG	1 cut(s)	438
BtsCI	GGATG	1 cut(s)	126
BtsI	GCAGTG	2 cut(s)	30, 657
BtsIMutI	CAGTG	2 cut(s)	30, 657
Cac8I	GCNNGC	5 cut(s)	52, 541, 573, 602, 720
CfoI	GCGC	1 cut(s)	505
Cfr13I	GGNCC	6 cut(s)	244, 449, 478, 552, 693, 791
Csp6I	GTAC	1 cut(s)	581
CspCI	CAANNNNNGTGG	2 cut(s)	814, 849
CviQI	GTAC	1 cut(s)	581
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	3 cut(s)	212, 948, 1014
DpnII	GATC	3 cut(s)	210, 946, 1012
EaeI	YGGCCR	3 cut(s)	123, 297, 822
Eam1104I	CTCTTC	1 cut(s)	530
EarI	CTCTTC	1 cut(s)	530
Eco130I	CCWWGG	5 cut(s)	138, 390, 405, 438, 819
Eco147I	AGGCCT	3 cut(s)	54, 181, 915
Eco24I	GRGCYC	2 cut(s)	739, 851
Eco47I	GGWCC	5 cut(s)	244, 478, 552, 693, 791
Eco57I	CTGAAG	1 cut(s)	483
Eco88I	CYCGRG	1 cut(s)	376
EcoO109I	RGGNCCY	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	338
EcoT14I	CCWWGG	5 cut(s)	138, 390, 405, 438, 819
EcoT38I	GRGCYC	2 cut(s)	739, 851
ErhI	CCWWGG	5 cut(s)	138, 390, 405, 438, 819
FaqI	GGGAC	3 cut(s)	491, 783, 804
FblI	GTMKAC	1 cut(s)	875
Fnu4HI	GCNGC	3 cut(s)	218, 723, 753
FokI	GGATG	1 cut(s)	133
FriOI	GRGCYC	2 cut(s)	739, 851
Fsp4HI	GCNGC	3 cut(s)	218, 723, 753
FspBI	CTAG	2 cut(s)	177, 536
GlaI	GCGC	1 cut(s)	504
GluI	GCNGC	3 cut(s)	218, 723, 753
GsaI	CCCAGC	1 cut(s)	1004
GsuI	CTGGAG	1 cut(s)	374
HaeII	RGCGCY	1 cut(s)	506
HaeIII	GGCC	9 cut(s)	54, 125, 181, 299, 338, 451, 809, 824, 915
HapII	CCGG	1 cut(s)	317
HhaI	GCGC	1 cut(s)	505
Hin6I	GCGC	1 cut(s)	503
HinP1I	GCGC	1 cut(s)	503
HinfI	GANTC	2 cut(s)	883, 962
HpaII	CCGG	1 cut(s)	317
Hpy166II	GTNNAC	2 cut(s)	364, 876
Hpy188I	TCNGA	2 cut(s)	893, 961
Hpy188III	TCNNGA	1 cut(s)	1016
Hpy8I	GTNNAC	2 cut(s)	364, 876
HpyAV	CCTTC	3 cut(s)	462, 638, 781
HpyCH4III	ACNGT	1 cut(s)	415
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 656
HpyF3I	CTNAG	1 cut(s)	221
HspAI	GCGC	1 cut(s)	503
Kzo9I	GATC	3 cut(s)	210, 946, 1012
LmnI	GCTCC	3 cut(s)	422, 647, 893
Lsp1109I	GCAGC	3 cut(s)	204, 734, 739
MaeI	CTAG	2 cut(s)	177, 536
MaeIII	GTNAC	2 cut(s)	409, 898
MalI	GATC	3 cut(s)	212, 948, 1014
MboI	GATC	3 cut(s)	210, 946, 1012
MboII	GAAGA	6 cut(s)	283, 489, 517, 793, 796, 995
MfeI	CAATTG	1 cut(s)	869
MhlI	GDGCHC	3 cut(s)	523, 739, 851
MlsI	TGGCCA	2 cut(s)	125, 824
MluCI	AATT	5 cut(s)	9, 144, 426, 679, 869
MluNI	TGGCCA	2 cut(s)	125, 824
MlyI	GAGTC	1 cut(s)	892
MnlI	CCTC	6 cut(s)	374, 467, 905, 926, 963, 967
Mox20I	TGGCCA	2 cut(s)	125, 824
MscI	TGGCCA	2 cut(s)	125, 824
MseI	TTAA	2 cut(s)	813, 1024
MslI	CAYNNNNRTG	3 cut(s)	23, 107, 154
Msp20I	TGGCCA	2 cut(s)	125, 824
MspA1I	CMGCKG	1 cut(s)	725
MspI	CCGG	1 cut(s)	317
MspR9I	CCNGG	1 cut(s)	340
MunI	CAATTG	1 cut(s)	869
Mva1269I	GAATGC	1 cut(s)	976
MvaI	CCWGG	1 cut(s)	340
MwoI	GCNNNNNNNGC	2 cut(s)	47, 656
NcoI	CCATGG	1 cut(s)	438
NdeII	GATC	3 cut(s)	210, 946, 1012
NlaIV	GGNNCC	5 cut(s)	403, 450, 479, 792, 997
NmeAIII	GCCGAG	1 cut(s)	785
NspI	RCATGY	2 cut(s)	229, 313
OliI	CACNNNNGTG	1 cut(s)	107
PceI	AGGCCT	3 cut(s)	54, 181, 915
PctI	GAATGC	1 cut(s)	976
PfeI	GAWTC	1 cut(s)	962
PkrI	GCNGC	3 cut(s)	219, 724, 754
Ple19I	CGATCG	1 cut(s)	1015
PleI	GAGTC	1 cut(s)	891
PpsI	GAGTC	1 cut(s)	891
Psp6I	CCWGG	1 cut(s)	338
PspFI	CCCAGC	1 cut(s)	1000
PspGI	CCWGG	1 cut(s)	338
PspN4I	GGNNCC	5 cut(s)	403, 450, 479, 792, 997
PspPI	GGNCC	6 cut(s)	244, 449, 478, 552, 693, 791
PsrI	GAACNNNNNNTAC	2 cut(s)	394, 426
PstI	CTGCAG	1 cut(s)	371
PvuI	CGATCG	1 cut(s)	1015
PvuII	CAGCTG	1 cut(s)	725
RsaI	GTAC	1 cut(s)	582
RsaNI	GTAC	1 cut(s)	581
RseI	CAYNNNNRTG	3 cut(s)	23, 107, 154
SaqAI	TTAA	2 cut(s)	813, 1024
SatI	GCNGC	3 cut(s)	218, 723, 753
Sau3AI	GATC	3 cut(s)	210, 946, 1012
Sau96I	GGNCC	6 cut(s)	244, 449, 478, 552, 693, 791
SchI	GAGTC	1 cut(s)	892
ScrFI	CCNGG	1 cut(s)	340
SduI	GDGCHC	3 cut(s)	523, 739, 851
SetI	ASST	7 cut(s)	107, 201, 396, 407, 606, 727, 898
SfcI	CTRYAG	1 cut(s)	367
SinI	GGWCC	5 cut(s)	244, 478, 552, 693, 791
SmiMI	CAYNNNNRTG	3 cut(s)	23, 107, 154
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	5 cut(s)	9, 144, 426, 679, 869
SseBI	AGGCCT	3 cut(s)	54, 181, 915
SspMI	CTAG	2 cut(s)	177, 536
StuI	AGGCCT	3 cut(s)	54, 181, 915
StyD4I	CCNGG	1 cut(s)	338
StyI	CCWWGG	5 cut(s)	138, 390, 405, 438, 819
TaaI	ACNGT	1 cut(s)	415
TasI	AATT	5 cut(s)	9, 144, 426, 679, 869
TatI	WGTACW	1 cut(s)	580
TfiI	GAWTC	1 cut(s)	962
Tru1I	TTAA	2 cut(s)	813, 1024
Tru9I	TTAA	2 cut(s)	813, 1024
TscAI	CASTG	2 cut(s)	30, 657
TseI	GCWGC	3 cut(s)	217, 722, 752
TspDTI	ATGAA	4 cut(s)	284, 322, 550, 879
TspRI	CASTG	2 cut(s)	30, 657
VpaK11BI	GGWCC	5 cut(s)	244, 478, 552, 693, 791
XapI	RAATTY	1 cut(s)	679
XceI	RCATGY	2 cut(s)	229, 313
XcmI	CCANNNNNNNNNTGG	2 cut(s)	199, 832
XmiI	GTMKAC	1 cut(s)	875
XspI	CTAG	2 cut(s)	177, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.