RLG00000027369

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
10983655 .. 10990154
6500 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027369

Sequence Viewer

Length: 1014 bp
ATGAGTTGCATGACTGCAATTCTTGTTATTGCAATATGTTTTGTTCAAGCCTTGTATGCAGGCCTCTCCATCATCACAATCCTTGCACTAGGGCAGTGCAAGAGCCACTACACCTCTGTGGTGTATCGTATGGCCATTACAATTGCCCTGGCAAGTCCATTGGCATGGTATCTAGAGAGAAATTCTAGGCCTAAAATGACCATCAAGGTCATGGCAAAGATCATACTGCTAAGCATGTTTGACCCTGTAATGAACTTAAACTTATACTATGCGGGCATGGATAACTCCAATGCCACATTCACATCTGCCATGTGCAACATGCTTCCGGTGTTAGCATTTGTCATGGCCTGGATTTTCAGGCTGGAGAATGTGGACTACAGACGCCCGAGAGGATTGGCCAAGGTTCTAGGAACCATGGTTACTCTGGTAGGAGCAATCCTCCTTACCATGGTCAAGGGGCCTTCCTTCACCTTGCCATGGGCAAGGGACCACGAGAAAAATCATTCTTCACAGCCCAAAGTCAAGGCTTGTTTCAGCTGCTCCTGTTTCATGATCCTACAAGACAATGTACTCAAGTCCTACCCCTGCAAGCTCTCTCTCACCGCTTTGATTTACTTCTGGGGTATGGTGGAAGGAGTAGTGGTGGCCGTTGTGGTTGAAAGGGGGGATTCGGAAGCATGGTCCATACACTCGGACTTCAAGTTGCTCGCAGCTGTTTATGGGGCTCTTGTATCGGGGGCTGCATATTATGTCATGGGACTGGTTGTGAAGAAGAAGGGTCCAGTTTTCTATTGGGCCTTTAACCCCTTAGCCACTCTGCTTGTGGAGATTTTGGGGCCTTTTTTTCTGGCAGAACAATTGCATACTGGGAGTCTTATCGGAGCTGTAACCATTGTGGGAGGCCTCTATCTTGTTCTTTGGGGAAAAGCAAGAAATCAGCTTTCCTCTGATTCAGAGAATGCCAATGTGAAAGAACCAACTGGAAACCCAGCAACAGACGATCGCCAAGTTTAA

Protein Analysis

338

Amino Acids

37.05

Weight (kDa)

9.02

Isoelectric Point (pI)

33.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 10 - 149 2.6e-08 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000617)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39510
fragaria_vesca FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 272, 603
AclWI GGATC 1 cut(s) 547
AcoI YGGCCR 3 cut(s) 132, 396, 645
AcsI RAATTY 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 382
AfaI GTAC 1 cut(s) 570
AfiI CCNNNNNNNGG 2 cut(s) 448, 477
AgsI TTSAA 3 cut(s) 47, 659, 700
AjnI CCWGG 2 cut(s) 147, 347
AjuI GAANNNNNNNTTGG 2 cut(s) 281, 313
AleI CACNNNNGTG 1 cut(s) 116
AluBI AGCT 5 cut(s) 537, 592, 713, 884, 940
AluI AGCT 5 cut(s) 537, 592, 713, 884, 940
AlwI GGATC 1 cut(s) 547
Ama87I CYCGRG 1 cut(s) 385
ApeKI GCWGC 3 cut(s) 537, 710, 740
ApoI RAATTY 1 cut(s) 181
AspS9I GGNCC 6 cut(s) 458, 487, 681, 779, 795, 836
AsuHPI GGTGA 2 cut(s) 460, 592
AvaI CYCGRG 1 cut(s) 385
AvaII GGWCC 3 cut(s) 487, 681, 779
BalI TGGCCA 2 cut(s) 134, 398
BanII GRGCYC 1 cut(s) 727
BauI CACGAG 1 cut(s) 491
BbvI GCAGC 3 cut(s) 524, 722, 727
BccI CCATC 2 cut(s) 77, 209
BceAI ACGGC 1 cut(s) 632
BciT130I CCWGG 2 cut(s) 149, 349
BfaI CTAG 4 cut(s) 89, 173, 186, 407
BfmI CTRYAG 1 cut(s) 376
BisI GCNGC 3 cut(s) 538, 711, 741
BlpI GCTNAGC 1 cut(s) 230
BlsI GCNGC 3 cut(s) 539, 712, 742
Bme1390I CCNGG 2 cut(s) 149, 349
Bme18I GGWCC 3 cut(s) 487, 681, 779
BmeT110I CYCGRG 1 cut(s) 385
BmgT120I GGNCC 6 cut(s) 458, 487, 681, 779, 795, 836
BmiI GGNNCC 5 cut(s) 412, 459, 488, 780, 837
BmrFI CCNGG 2 cut(s) 149, 349
BmrI ACTGGG 1 cut(s) 876
BmuI ACTGGG 1 cut(s) 876
BplI GAGNNNNNCTC 2 cut(s) 423, 455
BpmI CTGGAG 1 cut(s) 383
Bpu10I CCTNAGC 1 cut(s) 808
Bpu1102I GCTNAGC 1 cut(s) 230
BpuEI CTTGAG 1 cut(s) 557
BsaHI GRCGYC 1 cut(s) 382
BsaJI CCNNGG 5 cut(s) 147, 399, 414, 447, 476
BsaWI WCCGGW 1 cut(s) 325
BsaXI ACNNNNNCTCC 2 cut(s) 627, 657
Bsc4I CCNNNNNNNGG 2 cut(s) 448, 477
Bse1I ACTGG 4 cut(s) 765, 782, 871, 985
BseBI CCWGG 2 cut(s) 149, 349
BseDI CCNNGG 5 cut(s) 147, 399, 414, 447, 476
BseLI CCNNNNNNNGG 2 cut(s) 448, 477
BseNI ACTGG 4 cut(s) 765, 782, 871, 985
BseXI GCAGC 3 cut(s) 524, 722, 727
BseYI CCCAGC 1 cut(s) 988
Bsh1285I CGRYCG 1 cut(s) 1003
BsiEI CGRYCG 1 cut(s) 1003
BsiHKCI CYCGRG 1 cut(s) 385
BsiSI CCGG 1 cut(s) 326
BslFI GGGAC 2 cut(s) 500, 771
BslI CCNNNNNNNGG 2 cut(s) 448, 477
BsmFI GGGAC 2 cut(s) 500, 771
BsmI GAATGC 1 cut(s) 964
BsoBI CYCGRG 1 cut(s) 385
Bsp1286I GDGCHC 1 cut(s) 727
Bsp143I GATC 3 cut(s) 219, 552, 1000
Bsp1720I GCTNAGC 1 cut(s) 230
Bsp19I CCATGG 3 cut(s) 414, 447, 476
BspACI CCGC 2 cut(s) 272, 603
BspHI TCATGA 1 cut(s) 549
BspLI GGNNCC 5 cut(s) 412, 459, 488, 780, 837
BspPI GGATC 1 cut(s) 547
BsrI ACTGG 4 cut(s) 765, 782, 871, 985
BssECI CCNNGG 5 cut(s) 147, 399, 414, 447, 476
BssMI GATC 3 cut(s) 219, 552, 1000
BssNI GRCGYC 1 cut(s) 382
BssSI CACGAG 1 cut(s) 491
BssT1I CCWWGG 4 cut(s) 399, 414, 447, 476
Bst2BI CACGAG 1 cut(s) 491
Bst2UI CCWGG 2 cut(s) 149, 349
BstACI GRCGYC 1 cut(s) 382
BstC8I GCNNGC 4 cut(s) 61, 274, 590, 708
BstDEI CTNAG 2 cut(s) 230, 808
BstDSI CCRYGG 3 cut(s) 414, 447, 476
BstKTI GATC 3 cut(s) 222, 555, 1003
BstMBI GATC 3 cut(s) 219, 552, 1000
BstMCI CGRYCG 1 cut(s) 1003
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNI CCWGG 2 cut(s) 149, 349
BstNSI RCATGY 2 cut(s) 238, 322
BstSCI CCNGG 2 cut(s) 147, 347
BstSFI CTRYAG 1 cut(s) 376
BstV1I GCAGC 3 cut(s) 524, 722, 727
BstXI CCANNNNNNTGG 1 cut(s) 165
BtgI CCRYGG 3 cut(s) 414, 447, 476
BtsI GCAGTG 1 cut(s) 101
BtsIMutI CAGTG 1 cut(s) 101
Cac8I GCNNGC 4 cut(s) 61, 274, 590, 708
CciI TCATGA 1 cut(s) 549
Cfr13I GGNCC 6 cut(s) 458, 487, 681, 779, 795, 836
CseI GACGC 1 cut(s) 390
Csp6I GTAC 1 cut(s) 569
CspCI CAANNNNNGTGG 2 cut(s) 802, 837
CviQI GTAC 1 cut(s) 569
DdeI CTNAG 2 cut(s) 230, 808
DpnI GATC 3 cut(s) 221, 554, 1002
DpnII GATC 3 cut(s) 219, 552, 1000
EaeI YGGCCR 3 cut(s) 132, 396, 645
Eco130I CCWWGG 4 cut(s) 399, 414, 447, 476
Eco147I AGGCCT 3 cut(s) 63, 190, 903
Eco24I GRGCYC 1 cut(s) 727
Eco47I GGWCC 3 cut(s) 487, 681, 779
Eco88I CYCGRG 1 cut(s) 385
EcoO109I RGGNCCY 2 cut(s) 458, 836
EcoRII CCWGG 2 cut(s) 147, 347
EcoT14I CCWWGG 4 cut(s) 399, 414, 447, 476
EcoT38I GRGCYC 1 cut(s) 727
ErhI CCWWGG 4 cut(s) 399, 414, 447, 476
FaqI GGGAC 2 cut(s) 500, 771
FauI CCCGC 1 cut(s) 265
Fnu4HI GCNGC 3 cut(s) 538, 711, 741
FriOI GRGCYC 1 cut(s) 727
Fsp4HI GCNGC 3 cut(s) 538, 711, 741
FspBI CTAG 4 cut(s) 89, 173, 186, 407
GluI GCNGC 3 cut(s) 538, 711, 741
GsaI CCCAGC 1 cut(s) 992
GsuI CTGGAG 1 cut(s) 383
HapII CCGG 1 cut(s) 326
HgaI GACGC 1 cut(s) 390
Hin1I GRCGYC 1 cut(s) 382
HinfI GANTC 3 cut(s) 668, 871, 950
HpaII CCGG 1 cut(s) 326
HphI GGTGA 2 cut(s) 460, 592
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 5 cut(s) 673, 694, 881, 949, 955
Hpy188III TCNNGA 2 cut(s) 173, 550
Hpy8I GTNNAC 1 cut(s) 373
HpyAV CCTTC 4 cut(s) 471, 475, 626, 769
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 2 cut(s) 230, 808
Hsp92I GRCGYC 1 cut(s) 382
Kzo9I GATC 3 cut(s) 219, 552, 1000
LmnI GCTCC 3 cut(s) 431, 545, 881
Lsp1109I GCAGC 3 cut(s) 524, 722, 727
MaeI CTAG 4 cut(s) 89, 173, 186, 407
MaeIII GTNAC 2 cut(s) 418, 886
MalI GATC 3 cut(s) 221, 554, 1002
MboI GATC 3 cut(s) 219, 552, 1000
MboII GAAGA 3 cut(s) 498, 781, 784
MfeI CAATTG 2 cut(s) 141, 857
MhlI GDGCHC 1 cut(s) 727
MlsI TGGCCA 2 cut(s) 134, 398
MluCI AATT 4 cut(s) 18, 141, 181, 857
MluNI TGGCCA 2 cut(s) 134, 398
MlyI GAGTC 1 cut(s) 880
MnlI CCTC 7 cut(s) 74, 124, 383, 449, 893, 914, 955
Mox20I TGGCCA 2 cut(s) 134, 398
MscI TGGCCA 2 cut(s) 134, 398
MseI TTAA 3 cut(s) 257, 801, 1012
MslI CAYNNNNRTG 2 cut(s) 116, 163
Msp20I TGGCCA 2 cut(s) 134, 398
MspA1I CMGCKG 2 cut(s) 537, 713
MspI CCGG 1 cut(s) 326
MspR9I CCNGG 2 cut(s) 149, 349
MunI CAATTG 2 cut(s) 141, 857
Mva1269I GAATGC 1 cut(s) 964
MvaI CCWGG 2 cut(s) 149, 349
MwoI GCNNNNNNNGC 1 cut(s) 56
NcoI CCATGG 3 cut(s) 414, 447, 476
NdeII GATC 3 cut(s) 219, 552, 1000
NlaIV GGNNCC 5 cut(s) 412, 459, 488, 780, 837
NspI RCATGY 2 cut(s) 238, 322
OliI CACNNNNGTG 1 cut(s) 116
PagI TCATGA 1 cut(s) 549
PceI AGGCCT 3 cut(s) 63, 190, 903
PctI GAATGC 1 cut(s) 964
PfeI GAWTC 2 cut(s) 668, 950
PkrI GCNGC 3 cut(s) 539, 712, 742
Ple19I CGATCG 1 cut(s) 1003
PleI GAGTC 1 cut(s) 879
PpsI GAGTC 1 cut(s) 879
Psp6I CCWGG 2 cut(s) 147, 347
PspFI CCCAGC 1 cut(s) 988
PspGI CCWGG 2 cut(s) 147, 347
PspN4I GGNNCC 5 cut(s) 412, 459, 488, 780, 837
PspPI GGNCC 6 cut(s) 458, 487, 681, 779, 795, 836
PsrI GAACNNNNNNTAC 2 cut(s) 403, 435
PvuI CGATCG 1 cut(s) 1003
PvuII CAGCTG 2 cut(s) 537, 713
RsaI GTAC 1 cut(s) 570
RsaNI GTAC 1 cut(s) 569
RseI CAYNNNNRTG 2 cut(s) 116, 163
SaqAI TTAA 3 cut(s) 257, 801, 1012
SatI GCNGC 3 cut(s) 538, 711, 741
Sau3AI GATC 3 cut(s) 219, 552, 1000
Sau96I GGNCC 6 cut(s) 458, 487, 681, 779, 795, 836
SchI GAGTC 1 cut(s) 880
ScrFI CCNGG 2 cut(s) 149, 349
SduI GDGCHC 1 cut(s) 727
SetI ASST 9 cut(s) 116, 210, 405, 473, 539, 594, 715, 886, 942
SfcI CTRYAG 1 cut(s) 376
SinI GGWCC 3 cut(s) 487, 681, 779
SmiMI CAYNNNNRTG 2 cut(s) 116, 163
SmlI CTYRAG 1 cut(s) 572
SmoI CTYRAG 1 cut(s) 572
Sse9I AATT 4 cut(s) 18, 141, 181, 857
SseBI AGGCCT 3 cut(s) 63, 190, 903
SsiI CCGC 2 cut(s) 272, 603
SspMI CTAG 4 cut(s) 89, 173, 186, 407
StuI AGGCCT 3 cut(s) 63, 190, 903
StyD4I CCNGG 2 cut(s) 147, 347
StyI CCWWGG 4 cut(s) 399, 414, 447, 476
TasI AATT 4 cut(s) 18, 141, 181, 857
TatI WGTACW 1 cut(s) 568
TfiI GAWTC 2 cut(s) 668, 950
Tru1I TTAA 3 cut(s) 257, 801, 1012
Tru9I TTAA 3 cut(s) 257, 801, 1012
TscAI CASTG 1 cut(s) 101
TseI GCWGC 3 cut(s) 537, 710, 740
TspDTI ATGAA 2 cut(s) 266, 538
TspRI CASTG 1 cut(s) 101
VpaK11BI GGWCC 3 cut(s) 487, 681, 779
XapI RAATTY 1 cut(s) 181
XbaI TCTAGA 1 cut(s) 172
XceI RCATGY 2 cut(s) 238, 322
XcmI CCANNNNNNNNNTGG 4 cut(s) 208, 421, 789, 820
XspI CTAG 4 cut(s) 89, 173, 186, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.