Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Forward (+)

25506292 .. 25508230

Gene Structure 1939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G230600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGCTTCATTAGAGAGGAAAAACATATTTAGAACAAAGTTTATTATGGAGTCATTAACTAACCTGATCCGCCGGGCAAAGCTGATTTTAGCTGTAGCTCTCTTGCAGGGTGCCTATGCAGGCCAGGCCATAATTGTTAGGATGGCTATGAACAAGGGAATGAGCCATTACATATTCTTAGTCTACCGAATGGCCTTTGCCACTGTTCTTATTGCTCCATTTGCTCTTATCTTGGATAGGAAATCGAGGCCGAAGATGACATCCTCCATCCTTGTGAAGACAATGCTGCTCAGCCTTTTCGACCCTCTGCTTGACCAGAACCTATACTATATGGCAATGTCCTACTCTACAGCTACTTTCACATCTGCCATGTTCAATATTCTTCCCGCAATTGCATTTTTTATGGCCTGGATCTTTAGGCTTGAGACAGTAAACATTAGGAAACTGCATAGCCAGGCAAAGGTTCTTGGGACTATAATCACAGTTGGAGGAGCTATAATATTGACACTAGCCAAAGGGCCTGCACTAAATTTGCCATGGACAAAGGGCAAAAATCAACACCATCATCAAATGCAAAGTGATTCAAACCACAAAGACATCACAAAGAGTGCTCTATTGAGTGCAGCAGCTTGCTTCTGCTGGTCTAGTTTCATCATTTTGCAAGCATTTACACTAAGATCATATCCTTGTAAGCTCTCCCTGGCAGCTCTTACATGTTTTTGGGGTCTGGTGGAAGGAGCAATCCTGGCCCTTGTAGTAGAATGGAGGAACAGTAATGCAGACTGGTCCATACACTTGGACATAAGACTTTTAGCAGCTTTTTATGGGGGGATACTCTCTGGGGTTGCTTATTACATTATGGGAATGGTAAATAAAGAAAAGGGACCTGTTTTCTTTTCTGCTTTTAACCCATTAGGCACAGTAATTATTGCAATTCTGGGTTCCCTTGTTTTAGATGAGCACATGTACCTTGGGAGTCTTATTGGAGCCATTGTCATCGTTGTTGGCCTATATCTGGTTCTGTGGGGCAAGACCAAAGACGAGCCTCCATCTCAATTATCAAAAACTCAGAGTCAACCAAACGATGAGCCTATAACTACAAGTCAACAACAAATGATGCCAGAGGGAGGCCTGGATATAGAACCTGGAGGTGAACCAAAAACAAACATAATTGACAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

394

Amino Acids

43.45

Weight (kDa)

9.36

Isoelectric Point (pI)

48.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	110
AccI	GTMKAC	1 cut(s)	183
AciI	CCGC	2 cut(s)	70, 387
AclWI	GGATC	2 cut(s)	61, 419
AcsI	RAATTY	1 cut(s)	529
AfaI	GTAC	1 cut(s)	968
AfiI	CCNNNNNNNGG	3 cut(s)	460, 1015, 1127
AflIII	ACRYGT	2 cut(s)	713, 963
AgsI	TTSAA	2 cut(s)	376, 585
AjnI	CCWGG	7 cut(s)	123, 407, 453, 699, 744, 1131, 1144
Alw21I	GWGCWC	2 cut(s)	613, 963
Alw26I	GTCTC	1 cut(s)	419
AlwI	GGATC	2 cut(s)	61, 419
AoxI	GGCC	9 cut(s)	121, 126, 192, 248, 405, 518, 747, 1006, 1129
ApeKI	GCWGC	5 cut(s)	286, 623, 626, 704, 815
ApoI	RAATTY	1 cut(s)	529
AspS9I	GGNCC	4 cut(s)	518, 748, 786, 884
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	1163
AvaII	GGWCC	2 cut(s)	786, 884
BanI	GGYRCC	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	284
Bbv12I	GWGCWC	2 cut(s)	613, 963
BbvI	GCAGC	5 cut(s)	273, 635, 638, 716, 827
BccI	CCATC	4 cut(s)	136, 275, 570, 1057
BciT130I	CCWGG	7 cut(s)	125, 409, 455, 701, 746, 1133, 1146
BciVI	GTATCC	1 cut(s)	825
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	419
BfaI	CTAG	2 cut(s)	509, 645
BfmI	CTRYAG	2 cut(s)	93, 348
BfuI	GTATCC	1 cut(s)	825
BisI	GCNGC	5 cut(s)	287, 624, 627, 705, 816
BlpI	GCTNAGC	1 cut(s)	290
BlsI	GCNGC	5 cut(s)	288, 625, 628, 706, 817
Bme1390I	CCNGG	8 cut(s)	74, 125, 409, 455, 701, 746, 1133, 1146
Bme18I	GGWCC	2 cut(s)	786, 884
BmgT120I	GGNCC	4 cut(s)	518, 748, 786, 884
BmiI	GGNNCC	4 cut(s)	112, 885, 943, 988
BmrFI	CCNGG	8 cut(s)	74, 125, 409, 455, 701, 746, 1133, 1146
BmsI	GCATC	1 cut(s)	1107
BpiI	GAAGAC	1 cut(s)	284
BpmI	CTGGAG	1 cut(s)	1167
Bpu1102I	GCTNAGC	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	443
BpuMI	CCSGG	1 cut(s)	74
BsaJI	CCNNGG	3 cut(s)	536, 699, 970
BsaXI	ACNNNNNCTCC	4 cut(s)	757, 787, 978, 1008
Bsc4I	CCNNNNNNNGG	3 cut(s)	460, 1015, 1127
Bse1I	ACTGG	1 cut(s)	788
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	7 cut(s)	125, 409, 455, 701, 746, 1133, 1146
BseDI	CCNNGG	3 cut(s)	536, 699, 970
BseGI	GGATG	3 cut(s)	147, 260, 267
BseLI	CCNNNNNNNGG	3 cut(s)	460, 1015, 1127
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	2 cut(s)	304, 1082
BseNI	ACTGG	1 cut(s)	788
BseRI	GAGGAG	1 cut(s)	504
BseXI	GCAGC	5 cut(s)	273, 635, 638, 716, 827
BsgI	GTGCAG	2 cut(s)	507, 642
BshFI	GGCC	9 cut(s)	123, 128, 194, 250, 407, 520, 749, 1008, 1131
BshNI	GGYRCC	1 cut(s)	110
BsiHKAI	GWGCWC	2 cut(s)	613, 963
BsiSI	CCGG	1 cut(s)	73
BslFI	GGGAC	2 cut(s)	484, 897
BslI	CCNNNNNNNGG	3 cut(s)	460, 1015, 1127
BsmAI	GTCTC	1 cut(s)	419
BsmFI	GGGAC	2 cut(s)	484, 897
BsnI	GGCC	9 cut(s)	123, 128, 194, 250, 407, 520, 749, 1008, 1131
Bsp1286I	GDGCHC	2 cut(s)	613, 963
Bsp143I	GATC	3 cut(s)	66, 411, 677
Bsp1720I	GCTNAGC	1 cut(s)	290
Bsp19I	CCATGG	1 cut(s)	536
BspACI	CCGC	2 cut(s)	70, 387
BspANI	GGCC	9 cut(s)	123, 128, 194, 250, 407, 520, 749, 1008, 1131
BspCNI	CTCAG	2 cut(s)	303, 1081
BspLI	GGNNCC	4 cut(s)	112, 885, 943, 988
BspPI	GGATC	2 cut(s)	61, 419
BspT107I	GGYRCC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	1 cut(s)	788
BssECI	CCNNGG	3 cut(s)	536, 699, 970
BssMI	GATC	3 cut(s)	66, 411, 677
BssT1I	CCWWGG	2 cut(s)	536, 970
Bst2UI	CCWGG	7 cut(s)	125, 409, 455, 701, 746, 1133, 1146
Bst4CI	ACNGT	5 cut(s)	205, 430, 484, 773, 922
BstC8I	GCNNGC	4 cut(s)	121, 522, 631, 663
BstDEI	CTNAG	4 cut(s)	178, 290, 674, 1068
BstDSI	CCRYGG	1 cut(s)	536
BstF5I	GGATG	3 cut(s)	147, 260, 267
BstKTI	GATC	3 cut(s)	69, 414, 680
BstMAI	GTCTC	1 cut(s)	419
BstMBI	GATC	3 cut(s)	66, 411, 677
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 221, 746
BstNI	CCWGG	7 cut(s)	125, 409, 455, 701, 746, 1133, 1146
BstNSI	RCATGY	2 cut(s)	717, 967
BstSCI	CCNGG	8 cut(s)	72, 123, 407, 453, 699, 744, 1131, 1144
BstSFI	CTRYAG	2 cut(s)	93, 348
BstV1I	GCAGC	5 cut(s)	273, 635, 638, 716, 827
BstV2I	GAAGAC	1 cut(s)	284
BstX2I	RGATCY	1 cut(s)	411
BstXI	CCANNNNNNTGG	1 cut(s)	796
BstYI	RGATCY	1 cut(s)	411
BsuI	GTATCC	1 cut(s)	825
BsuRI	GGCC	9 cut(s)	123, 128, 194, 250, 407, 520, 749, 1008, 1131
BtgI	CCRYGG	1 cut(s)	536
BtsCI	GGATG	3 cut(s)	147, 260, 267
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	4 cut(s)	121, 522, 631, 663
Cfr13I	GGNCC	4 cut(s)	518, 748, 786, 884
Csp6I	GTAC	1 cut(s)	967
CviAII	CATG	4 cut(s)	370, 537, 714, 964
CviQI	GTAC	1 cut(s)	967
DdeI	CTNAG	4 cut(s)	178, 290, 674, 1068
DpnI	GATC	3 cut(s)	68, 413, 679
DpnII	GATC	3 cut(s)	66, 411, 677
EciI	GGCGGA	1 cut(s)	59
Eco130I	CCWWGG	2 cut(s)	536, 970
Eco147I	AGGCCT	1 cut(s)	1131
Eco47I	GGWCC	2 cut(s)	786, 884
EcoO109I	RGGNCCY	2 cut(s)	518, 884
EcoRII	CCWGG	7 cut(s)	123, 407, 453, 699, 744, 1131, 1144
EcoT14I	CCWWGG	2 cut(s)	536, 970
ErhI	CCWWGG	2 cut(s)	536, 970
FaeI	CATG	4 cut(s)	373, 540, 717, 967
FaqI	GGGAC	2 cut(s)	484, 897
FatI	CATG	4 cut(s)	369, 536, 713, 963
FauI	CCCGC	1 cut(s)	394
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	5 cut(s)	287, 624, 627, 705, 816
FokI	GGATG	3 cut(s)	154, 247, 254
Fsp4HI	GCNGC	5 cut(s)	287, 624, 627, 705, 816
FspBI	CTAG	2 cut(s)	509, 645
GluI	GCNGC	5 cut(s)	287, 624, 627, 705, 816
GsuI	CTGGAG	1 cut(s)	1167
HaeIII	GGCC	9 cut(s)	123, 128, 194, 250, 407, 520, 749, 1008, 1131
HapII	CCGG	1 cut(s)	73
Hin1II	CATG	4 cut(s)	373, 540, 717, 967
HincII	GTYRAC	2 cut(s)	1076, 1106
HindII	GTYRAC	2 cut(s)	1076, 1106
HinfI	GANTC	4 cut(s)	50, 581, 976, 1072
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	1 cut(s)	1163
Hpy166II	GTNNAC	5 cut(s)	184, 433, 1076, 1106, 1154
Hpy188I	TCNGA	1 cut(s)	1071
Hpy8I	GTNNAC	5 cut(s)	184, 433, 1076, 1106, 1154
HpyAV	CCTTC	1 cut(s)	728
HpyCH4III	ACNGT	5 cut(s)	205, 430, 484, 773, 922
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 221, 746
HpyF3I	CTNAG	4 cut(s)	178, 290, 674, 1068
Hsp92II	CATG	4 cut(s)	373, 540, 717, 967
Kzo9I	GATC	3 cut(s)	66, 411, 677
LmnI	GCTCC	4 cut(s)	220, 491, 737, 986
Lsp1109I	GCAGC	5 cut(s)	273, 635, 638, 716, 827
LweI	GCATC	1 cut(s)	1107
MaeI	CTAG	2 cut(s)	509, 645
MalI	GATC	3 cut(s)	68, 413, 679
MboI	GATC	3 cut(s)	66, 411, 677
MboII	GAAGA	3 cut(s)	265, 289, 374
MfeI	CAATTG	1 cut(s)	390
MflI	RGATCY	1 cut(s)	411
MhlI	GDGCHC	2 cut(s)	613, 963
MluCI	AATT	7 cut(s)	132, 390, 529, 924, 933, 1055, 1170
MlyI	GAGTC	3 cut(s)	59, 985, 1081
MmeI	TCCRAC	1 cut(s)	466
MseI	TTAA	2 cut(s)	56, 906
MslI	CAYNNNNRTG	1 cut(s)	272
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	8 cut(s)	74, 125, 409, 455, 701, 746, 1133, 1146
MunI	CAATTG	1 cut(s)	390
MvaI	CCWGG	7 cut(s)	125, 409, 455, 701, 746, 1133, 1146
MwoI	GCNNNNNNNGC	3 cut(s)	125, 221, 746
NciI	CCSGG	1 cut(s)	74
NcoI	CCATGG	1 cut(s)	536
NdeII	GATC	3 cut(s)	66, 411, 677
NlaIII	CATG	4 cut(s)	373, 540, 717, 967
NlaIV	GGNNCC	4 cut(s)	112, 885, 943, 988
NspI	RCATGY	2 cut(s)	717, 967
PceI	AGGCCT	1 cut(s)	1131
PciI	ACATGT	2 cut(s)	713, 963
PfeI	GAWTC	1 cut(s)	581
PkrI	GCNGC	5 cut(s)	288, 625, 628, 706, 817
PleI	GAGTC	3 cut(s)	58, 984, 1080
PpsI	GAGTC	3 cut(s)	58, 984, 1080
PpuMI	RGGWCCY	1 cut(s)	884
PscI	ACATGT	2 cut(s)	713, 963
Psp5II	RGGWCCY	1 cut(s)	884
Psp6I	CCWGG	7 cut(s)	123, 407, 453, 699, 744, 1131, 1144
PspGI	CCWGG	7 cut(s)	123, 407, 453, 699, 744, 1131, 1144
PspN4I	GGNNCC	4 cut(s)	112, 885, 943, 988
PspPI	GGNCC	4 cut(s)	518, 748, 786, 884
PspPPI	RGGWCCY	1 cut(s)	884
PsuI	RGATCY	1 cut(s)	411
RsaI	GTAC	1 cut(s)	968
RsaNI	GTAC	1 cut(s)	967
RseI	CAYNNNNRTG	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	56, 906
SatI	GCNGC	5 cut(s)	287, 624, 627, 705, 816
Sau3AI	GATC	3 cut(s)	66, 411, 677
Sau96I	GGNCC	4 cut(s)	518, 748, 786, 884
SchI	GAGTC	3 cut(s)	59, 985, 1081
ScrFI	CCNGG	8 cut(s)	74, 125, 409, 455, 701, 746, 1133, 1146
SduI	GDGCHC	2 cut(s)	613, 963
SfaNI	GCATC	1 cut(s)	1107
SfcI	CTRYAG	2 cut(s)	93, 348
SinI	GGWCC	2 cut(s)	786, 884
SmiMI	CAYNNNNRTG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	7 cut(s)	132, 390, 529, 924, 933, 1055, 1170
SseBI	AGGCCT	1 cut(s)	1131
SsiI	CCGC	2 cut(s)	70, 387
SspI	AATATT	2 cut(s)	379, 501
SspMI	CTAG	2 cut(s)	509, 645
StuI	AGGCCT	1 cut(s)	1131
StyD4I	CCNGG	8 cut(s)	72, 123, 407, 453, 699, 744, 1131, 1144
StyI	CCWWGG	2 cut(s)	536, 970
TaaI	ACNGT	5 cut(s)	205, 430, 484, 773, 922
TaqI	TCGA	2 cut(s)	245, 300
TasI	AATT	7 cut(s)	132, 390, 529, 924, 933, 1055, 1170
TfiI	GAWTC	1 cut(s)	581
Tru1I	TTAA	2 cut(s)	56, 906
Tru9I	TTAA	2 cut(s)	56, 906
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	5 cut(s)	286, 623, 626, 704, 815
TspDTI	ATGAA	2 cut(s)	164, 640
TspRI	CASTG	1 cut(s)	208
VpaK11BI	GGWCC	2 cut(s)	786, 884
XapI	RAATTY	1 cut(s)	529
XceI	RCATGY	2 cut(s)	717, 967
XmiI	GTMKAC	1 cut(s)	183
XspI	CTAG	2 cut(s)	509, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.