RLG00000027370

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
11001933 .. 11003397
1465 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027370

Sequence Viewer

Length: 972 bp
ATGGGGTACATGACTGCAATTCTTGTCATTGCAGTGTGTTTTGTTCAAGCCTTGTATGCAGGCCTTTCTATCATCTCATTACTTGCACTAAACCAGGGCATGAGCCACTACACCTTTGTGGTGTATCGTATGGCCATTGCAACTGCCTTGGCAATTCCACTGGCATGGTATATAGAGAGACATTCTAGGCCTAAAATGACCATCAAGGTCATGGCAAAGATCATGCTGCTAAGCATGTTTGACCCTGTAATGGACCAAAACTTATACTATGTGGGCATGAAGAACTCCAACGCCACATTCACATCGGCCATGTGCAACATGCTTCCGGTGTTTGCATTTGTCAGGGCCTGGATTTTCAGGCTGGAGAATGTGGACTACAGACACCCTAGAGGATTGACCAAGGTTGTAGGAACCTTGGTTACTGTGGCAGGAGCAATCCTCCTTACCATGGTCAAGGGGCCTTCCCTCAACTTGCCATGGGCAAGGGACCACGACAAAAATCATTCTTCAGCGCCCAAAGCCAATGTACTCAAGTCCTACCCCTGCAAGCTCTCTCTCACCGCTTTGATTTGCTTCTGGGGTATGGTGGAAGGAGCAGTGGTGGCTGTTGTGGTTGAAAGGGGGAATTCGGAAGCATGGTCCATACACTTGGACTTGAAGTTGCTCGCAGCTGTTTATGGGGCTCTTGTATCGGGGGCTGCATATTATGTCATGGGACTGGTTGTGAAGAAGAAGGGACCAGTTTTCTACTCGGCCTTTAACCCCTTGGCCACTCTACTTGTGGCCATTTTGGGGTCATTTTTTCTGCATGAACAATTGTATACTGGGAGTCTCATCGGAGCTGTAACCATTGTGGGAGGCCTCTATCTTGTTCTTTGGGGAAAAGCAAGAGATCAGCCTCCCTCCAATTCAAAGAATGCCAATGTGGAAGAACCAACTGGAACCCCAGCAATAGACGATCGTGAAGTTTAA

Protein Analysis

324

Amino Acids

35.33

Weight (kDa)

9.31

Isoelectric Point (pI)

23.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 10 - 149 1.5e-11 EamA-like transporter family
EamA PF00892 190 - 292 6.6e-07 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000617)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39510
fragaria_vesca FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 821
AciI CCGC 1 cut(s) 561
AcoI YGGCCR 4 cut(s) 132, 306, 768, 783
AcsI RAATTY 1 cut(s) 625
AcuI CTGAAG 1 cut(s) 492
AfaI GTAC 2 cut(s) 8, 528
AfiI CCNNNNNNNGG 3 cut(s) 250, 448, 792
AgsI TTSAA 4 cut(s) 47, 617, 658, 912
AjnI CCWGG 2 cut(s) 93, 347
AjuI GAANNNNNNNTTGG 2 cut(s) 281, 313
AleI CACNNNNGTG 1 cut(s) 116
AluBI AGCT 3 cut(s) 550, 671, 842
AluI AGCT 3 cut(s) 550, 671, 842
Alw26I GTCTC 2 cut(s) 172, 836
AlwNI CAGNNNCTG 1 cut(s) 348
ApeKI GCWGC 3 cut(s) 226, 668, 698
ApoI RAATTY 1 cut(s) 625
AspLEI GCGC 1 cut(s) 514
AspS9I GGNCC 6 cut(s) 253, 345, 458, 487, 639, 737
AsuHPI GGTGA 1 cut(s) 550
AvaII GGWCC 4 cut(s) 253, 487, 639, 737
BalI TGGCCA 3 cut(s) 134, 770, 785
BanII GRGCYC 1 cut(s) 685
BbvI GCAGC 3 cut(s) 213, 680, 685
BccI CCATC 1 cut(s) 209
BciT130I CCWGG 2 cut(s) 95, 349
BcoDI GTCTC 2 cut(s) 172, 836
BfaI CTAG 2 cut(s) 186, 387
BfmI CTRYAG 1 cut(s) 376
BfoI RGCGCY 1 cut(s) 515
BisI GCNGC 3 cut(s) 227, 669, 699
BlpI GCTNAGC 1 cut(s) 230
BlsI GCNGC 3 cut(s) 228, 670, 700
Bme1390I CCNGG 2 cut(s) 95, 349
Bme18I GGWCC 4 cut(s) 253, 487, 639, 737
BmgT120I GGNCC 6 cut(s) 253, 345, 458, 487, 639, 737
BmiI GGNNCC 5 cut(s) 412, 459, 488, 738, 943
BmrFI CCNGG 2 cut(s) 95, 349
BmrI ACTGGG 1 cut(s) 834
BmuI ACTGGG 1 cut(s) 834
BplI GAGNNNNNCTC 2 cut(s) 423, 455
BpmI CTGGAG 1 cut(s) 383
Bpu1102I GCTNAGC 1 cut(s) 230
BpuEI CTTGAG 1 cut(s) 515
BsaJI CCNNGG 7 cut(s) 94, 147, 399, 414, 447, 476, 765
BsaWI WCCGGW 1 cut(s) 325
BsaXI ACNNNNNCTCC 2 cut(s) 585, 615
Bsc4I CCNNNNNNNGG 3 cut(s) 250, 448, 792
Bse1I ACTGG 5 cut(s) 165, 723, 740, 829, 943
Bse3DI GCAATG 2 cut(s) 27, 135
BseBI CCWGG 2 cut(s) 95, 349
BseDI CCNNGG 7 cut(s) 94, 147, 399, 414, 447, 476, 765
BseLI CCNNNNNNNGG 3 cut(s) 250, 448, 792
BseMI GCAATG 2 cut(s) 27, 135
BseNI ACTGG 5 cut(s) 165, 723, 740, 829, 943
BseXI GCAGC 3 cut(s) 213, 680, 685
BseYI CCCAGC 1 cut(s) 946
Bsh1285I CGRYCG 1 cut(s) 961
BsiEI CGRYCG 1 cut(s) 961
BsiSI CCGG 1 cut(s) 326
BslFI GGGAC 3 cut(s) 500, 729, 750
BslI CCNNNNNNNGG 3 cut(s) 250, 448, 792
BsmAI GTCTC 2 cut(s) 172, 836
BsmFI GGGAC 3 cut(s) 500, 729, 750
BsmI GAATGC 1 cut(s) 922
Bsp1286I GDGCHC 1 cut(s) 685
Bsp143I GATC 3 cut(s) 219, 892, 958
Bsp1720I GCTNAGC 1 cut(s) 230
Bsp19I CCATGG 2 cut(s) 447, 476
BspACI CCGC 1 cut(s) 561
BspLI GGNNCC 5 cut(s) 412, 459, 488, 738, 943
BsrDI GCAATG 2 cut(s) 27, 135
BsrI ACTGG 5 cut(s) 165, 723, 740, 829, 943
BssECI CCNNGG 7 cut(s) 94, 147, 399, 414, 447, 476, 765
BssMI GATC 3 cut(s) 219, 892, 958
BssNAI GTATAC 1 cut(s) 822
BssT1I CCWWGG 6 cut(s) 147, 399, 414, 447, 476, 765
Bst1107I GTATAC 1 cut(s) 822
Bst2UI CCWGG 2 cut(s) 95, 349
Bst4CI ACNGT 1 cut(s) 424
BstC8I GCNNGC 3 cut(s) 61, 548, 666
BstDEI CTNAG 1 cut(s) 230
BstDSI CCRYGG 2 cut(s) 447, 476
BstH2I RGCGCY 1 cut(s) 515
BstHHI GCGC 1 cut(s) 514
BstKTI GATC 3 cut(s) 222, 895, 961
BstMAI GTCTC 2 cut(s) 172, 836
BstMBI GATC 3 cut(s) 219, 892, 958
BstMCI CGRYCG 1 cut(s) 961
BstMWI GCNNNNNNNGC 3 cut(s) 56, 518, 602
BstNI CCWGG 2 cut(s) 95, 349
BstNSI RCATGY 2 cut(s) 238, 322
BstSCI CCNGG 2 cut(s) 93, 347
BstSFI CTRYAG 1 cut(s) 376
BstV1I GCAGC 3 cut(s) 213, 680, 685
BstXI CCANNNNNNTGG 2 cut(s) 165, 649
BstZ17I GTATAC 1 cut(s) 822
BtgI CCRYGG 2 cut(s) 447, 476
BtsI GCAGTG 2 cut(s) 39, 603
BtsIMutI CAGTG 3 cut(s) 39, 158, 603
Cac8I GCNNGC 3 cut(s) 61, 548, 666
CaiI CAGNNNCTG 1 cut(s) 348
CfoI GCGC 1 cut(s) 514
Cfr13I GGNCC 6 cut(s) 253, 345, 458, 487, 639, 737
Csp6I GTAC 2 cut(s) 7, 527
CspCI CAANNNNNGTGG 2 cut(s) 760, 795
CviQI GTAC 2 cut(s) 7, 527
DdeI CTNAG 1 cut(s) 230
DpnI GATC 3 cut(s) 221, 894, 960
DpnII GATC 3 cut(s) 219, 892, 958
EaeI YGGCCR 4 cut(s) 132, 306, 768, 783
Eco130I CCWWGG 6 cut(s) 147, 399, 414, 447, 476, 765
Eco147I AGGCCT 3 cut(s) 63, 190, 861
Eco24I GRGCYC 1 cut(s) 685
Eco47I GGWCC 4 cut(s) 253, 487, 639, 737
Eco57I CTGAAG 1 cut(s) 492
EcoO109I RGGNCCY 2 cut(s) 345, 458
EcoRI GAATTC 1 cut(s) 625
EcoRII CCWGG 2 cut(s) 93, 347
EcoT14I CCWWGG 6 cut(s) 147, 399, 414, 447, 476, 765
EcoT38I GRGCYC 1 cut(s) 685
ErhI CCWWGG 6 cut(s) 147, 399, 414, 447, 476, 765
FaqI GGGAC 3 cut(s) 500, 729, 750
FblI GTMKAC 1 cut(s) 821
Fnu4HI GCNGC 3 cut(s) 227, 669, 699
FriOI GRGCYC 1 cut(s) 685
Fsp4HI GCNGC 3 cut(s) 227, 669, 699
FspBI CTAG 2 cut(s) 186, 387
GlaI GCGC 1 cut(s) 513
GluI GCNGC 3 cut(s) 227, 669, 699
GsaI CCCAGC 1 cut(s) 950
GsuI CTGGAG 1 cut(s) 383
HaeII RGCGCY 1 cut(s) 515
HapII CCGG 1 cut(s) 326
HhaI GCGC 1 cut(s) 514
Hin6I GCGC 1 cut(s) 512
HinP1I GCGC 1 cut(s) 512
HinfI GANTC 1 cut(s) 829
HpaII CCGG 1 cut(s) 326
HphI GGTGA 1 cut(s) 550
Hpy166II GTNNAC 2 cut(s) 373, 822
Hpy188I TCNGA 2 cut(s) 631, 839
Hpy188III TCNNGA 1 cut(s) 962
Hpy8I GTNNAC 2 cut(s) 373, 822
HpyAV CCTTC 3 cut(s) 471, 584, 727
HpyCH4III ACNGT 1 cut(s) 424
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 518, 602
HpyF3I CTNAG 1 cut(s) 230
HspAI GCGC 1 cut(s) 512
Kzo9I GATC 3 cut(s) 219, 892, 958
LmnI GCTCC 3 cut(s) 431, 593, 839
Lsp1109I GCAGC 3 cut(s) 213, 680, 685
MaeI CTAG 2 cut(s) 186, 387
MaeIII GTNAC 2 cut(s) 418, 844
MalI GATC 3 cut(s) 221, 894, 960
MboI GATC 3 cut(s) 219, 892, 958
MboII GAAGA 5 cut(s) 292, 498, 739, 742, 941
MfeI CAATTG 1 cut(s) 815
MhlI GDGCHC 1 cut(s) 685
MlsI TGGCCA 3 cut(s) 134, 770, 785
MluCI AATT 5 cut(s) 18, 153, 625, 815, 907
MluNI TGGCCA 3 cut(s) 134, 770, 785
MlyI GAGTC 1 cut(s) 838
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 7 cut(s) 383, 449, 476, 851, 872, 909, 913
Mox20I TGGCCA 3 cut(s) 134, 770, 785
MscI TGGCCA 3 cut(s) 134, 770, 785
MseI TTAA 2 cut(s) 759, 970
MslI CAYNNNNRTG 3 cut(s) 32, 116, 163
Msp20I TGGCCA 3 cut(s) 134, 770, 785
MspA1I CMGCKG 1 cut(s) 671
MspI CCGG 1 cut(s) 326
MspR9I CCNGG 2 cut(s) 95, 349
MunI CAATTG 1 cut(s) 815
Mva1269I GAATGC 1 cut(s) 922
MvaI CCWGG 2 cut(s) 95, 349
MwoI GCNNNNNNNGC 3 cut(s) 56, 518, 602
NcoI CCATGG 2 cut(s) 447, 476
NdeII GATC 3 cut(s) 219, 892, 958
NlaIV GGNNCC 5 cut(s) 412, 459, 488, 738, 943
NmeAIII GCCGAG 1 cut(s) 731
NspI RCATGY 2 cut(s) 238, 322
OliI CACNNNNGTG 1 cut(s) 116
PceI AGGCCT 3 cut(s) 63, 190, 861
PctI GAATGC 1 cut(s) 922
PkrI GCNGC 3 cut(s) 228, 670, 700
Ple19I CGATCG 1 cut(s) 961
PleI GAGTC 1 cut(s) 837
PpsI GAGTC 1 cut(s) 837
Psp6I CCWGG 2 cut(s) 93, 347
PspFI CCCAGC 1 cut(s) 946
PspGI CCWGG 2 cut(s) 93, 347
PspN4I GGNNCC 5 cut(s) 412, 459, 488, 738, 943
PspPI GGNCC 6 cut(s) 253, 345, 458, 487, 639, 737
PsrI GAACNNNNNNTAC 2 cut(s) 403, 435
PstNI CAGNNNCTG 1 cut(s) 348
PvuI CGATCG 1 cut(s) 961
PvuII CAGCTG 1 cut(s) 671
RsaI GTAC 2 cut(s) 8, 528
RsaNI GTAC 2 cut(s) 7, 527
RseI CAYNNNNRTG 3 cut(s) 32, 116, 163
SaqAI TTAA 2 cut(s) 759, 970
SatI GCNGC 3 cut(s) 227, 669, 699
Sau3AI GATC 3 cut(s) 219, 892, 958
Sau96I GGNCC 6 cut(s) 253, 345, 458, 487, 639, 737
SchI GAGTC 1 cut(s) 838
ScrFI CCNGG 2 cut(s) 95, 349
SduI GDGCHC 1 cut(s) 685
SetI ASST 7 cut(s) 116, 210, 405, 416, 552, 673, 844
SfcI CTRYAG 1 cut(s) 376
SinI GGWCC 4 cut(s) 253, 487, 639, 737
SmiMI CAYNNNNRTG 3 cut(s) 32, 116, 163
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
Sse9I AATT 5 cut(s) 18, 153, 625, 815, 907
SseBI AGGCCT 3 cut(s) 63, 190, 861
SsiI CCGC 1 cut(s) 561
SspMI CTAG 2 cut(s) 186, 387
StuI AGGCCT 3 cut(s) 63, 190, 861
StyD4I CCNGG 2 cut(s) 93, 347
StyI CCWWGG 6 cut(s) 147, 399, 414, 447, 476, 765
TaaI ACNGT 1 cut(s) 424
TasI AATT 5 cut(s) 18, 153, 625, 815, 907
TatI WGTACW 1 cut(s) 526
Tru1I TTAA 2 cut(s) 759, 970
Tru9I TTAA 2 cut(s) 759, 970
TscAI CASTG 3 cut(s) 39, 165, 603
TseI GCWGC 3 cut(s) 226, 668, 698
TspDTI ATGAA 2 cut(s) 293, 825
TspRI CASTG 3 cut(s) 39, 165, 603
VpaK11BI GGWCC 4 cut(s) 253, 487, 639, 737
XapI RAATTY 1 cut(s) 625
XceI RCATGY 2 cut(s) 238, 322
XcmI CCANNNNNNNNNTGG 2 cut(s) 208, 778
XmiI GTMKAC 1 cut(s) 821
XspI CTAG 2 cut(s) 186, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.