Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026503.1

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1796

Gene Structure 1796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026503.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 956 bp

gcctgtccatcatttcaaaccttgcactaaggcagggaatgagccactacacctttgtagtgtatcgtatggccatagcaacggccttgggaagtccactggcatggtatctagagagattttctaggcctgcaatgaccatcaaggtcatgacaaagatcatgctactaagcatgtttgaccctgtactggtccaaaacttgtactatgtgggcatggagaactccaatgccacattcacatcggcaatgtgcaacatgctgccggtgtttgcatttgtcatggcctggattttcaggttggagaatgtggactacagacacccgaggggattggccaaggttctaggaaccttggtttcggtggtaggagcaatcctccttaccacggtcaaggggccttctctcaagttgccatgggcaaggaaccatgagaaaaatcattcttctggtgaagtcaagggtgctatcttcctaacactagcctgcttctgctggtcctgtttcatagtcctacaagccaatgtactcaagtcctacccctgcaagctctctctcaccgctttgatttgcttctggggtatggtggaaggagcagtggtggctattgtggttgaacgggaaaattcagaagcatggtccatacacttcgacatcaagttgctcgcagctgtttatggggctcttctatcgggggctgtatattatgtcatggggctggttgtgacgaagaagggaccagttttctactctgcctttaaccccttgggcaccctgcttgtggcgatcttgggatcattttttctggcagaacaattgtatactggaattctcatcggagctgtaaccattgtgggaggtctctatcttgttctttggggaaaagcaagagatcagcctccctctttgaatgccaatgtggaagaaccaactggaaccccagcaatagacgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

317

Amino Acids

34.75

Weight (kDa)

8.83

Isoelectric Point (pI)

24.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	769
AccI	GTMKAC	1 cut(s)	820
AciI	CCGC	1 cut(s)	560
AclWI	GGATC	1 cut(s)	801
AcoI	YGGCCR	2 cut(s)	71, 335
AcsI	RAATTY	2 cut(s)	624, 827
AfaI	GTAC	3 cut(s)	188, 205, 527
AfiI	CCNNNNNNNGG	3 cut(s)	189, 387, 780
AgsI	TTSAA	3 cut(s)	17, 616, 909
AjnI	CCWGG	1 cut(s)	286
AjuI	GAANNNNNNNTTGG	2 cut(s)	220, 252
AluBI	AGCT	3 cut(s)	549, 670, 841
AluI	AGCT	3 cut(s)	549, 670, 841
Alw26I	GTCTC	1 cut(s)	865
AlwI	GGATC	1 cut(s)	801
Ama87I	CYCGRG	1 cut(s)	324
AoxI	GGCC	6 cut(s)	71, 83, 127, 284, 335, 397
ApeKI	GCWGC	2 cut(s)	261, 667
ApoI	RAATTY	2 cut(s)	624, 827
AspS9I	GGNCC	5 cut(s)	192, 397, 497, 638, 736
AsuHPI	GGTGA	2 cut(s)	463, 549
AvaI	CYCGRG	1 cut(s)	324
AvaII	GGWCC	4 cut(s)	192, 497, 638, 736
BaeGI	GKGCMC	1 cut(s)	772
BalI	TGGCCA	2 cut(s)	73, 337
BanI	GGYRCC	1 cut(s)	769
BanII	GRGCYC	1 cut(s)	684
BbvI	GCAGC	2 cut(s)	248, 679
BccI	CCATC	2 cut(s)	16, 148
BceAI	ACGGC	1 cut(s)	98
BciT130I	CCWGG	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	865
BfaI	CTAG	4 cut(s)	112, 125, 346, 481
BfmI	CTRYAG	1 cut(s)	315
BisI	GCNGC	2 cut(s)	262, 668
BlsI	GCNGC	2 cut(s)	263, 669
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	4 cut(s)	192, 497, 638, 736
BmeT110I	CYCGRG	1 cut(s)	324
BmgT120I	GGNCC	5 cut(s)	192, 397, 497, 638, 736
BmiI	GGNNCC	6 cut(s)	351, 398, 427, 737, 771, 936
BmrFI	CCNGG	1 cut(s)	288
BplI	GAGNNNNNCTC	2 cut(s)	362, 394
BpuEI	CTTGAG	2 cut(s)	391, 514
BsaI	GGTCTC	1 cut(s)	865
BsaJI	CCNNGG	7 cut(s)	86, 325, 338, 353, 386, 415, 764
BsaXI	ACNNNNNCTCC	2 cut(s)	584, 614
Bsc4I	CCNNNNNNNGG	3 cut(s)	189, 387, 780
Bse118I	RCCGGY	1 cut(s)	264
Bse1I	ACTGG	5 cut(s)	104, 194, 739, 828, 936
Bse3DI	GCAATG	2 cut(s)	140, 254
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	7 cut(s)	86, 325, 338, 353, 386, 415, 764
BseLI	CCNNNNNNNGG	3 cut(s)	189, 387, 780
BseMI	GCAATG	2 cut(s)	140, 254
BseNI	ACTGG	5 cut(s)	104, 194, 739, 828, 936
BseSI	GKGCMC	1 cut(s)	772
BseXI	GCAGC	2 cut(s)	248, 679
BseYI	CCCAGC	1 cut(s)	939
BshFI	GGCC	6 cut(s)	73, 85, 129, 286, 337, 399
BshNI	GGYRCC	1 cut(s)	769
BsiHKCI	CYCGRG	1 cut(s)	324
BsiSI	CCGG	1 cut(s)	265
BslFI	GGGAC	1 cut(s)	749
BslI	CCNNNNNNNGG	3 cut(s)	189, 387, 780
BsmAI	GTCTC	1 cut(s)	865
BsmFI	GGGAC	1 cut(s)	749
BsmI	GAATGC	1 cut(s)	915
BsnI	GGCC	6 cut(s)	73, 85, 129, 286, 337, 399
Bso31I	GGTCTC	1 cut(s)	865
BsoBI	CYCGRG	1 cut(s)	324
Bsp1286I	GDGCHC	2 cut(s)	684, 772
Bsp143I	GATC	4 cut(s)	158, 785, 793, 891
Bsp19I	CCATGG	1 cut(s)	415
BspACI	CCGC	1 cut(s)	560
BspANI	GGCC	6 cut(s)	73, 85, 129, 286, 337, 399
BspHI	TCATGA	1 cut(s)	149
BspLI	GGNNCC	6 cut(s)	351, 398, 427, 737, 771, 936
BspPI	GGATC	1 cut(s)	801
BspQI	GCTCTTC	1 cut(s)	689
BspT107I	GGYRCC	1 cut(s)	769
BspTNI	GGTCTC	1 cut(s)	865
BsrDI	GCAATG	2 cut(s)	140, 254
BsrFI	RCCGGY	1 cut(s)	264
BsrI	ACTGG	5 cut(s)	104, 194, 739, 828, 936
BssAI	RCCGGY	1 cut(s)	264
BssECI	CCNNGG	7 cut(s)	86, 325, 338, 353, 386, 415, 764
BssMI	GATC	4 cut(s)	158, 785, 793, 891
BssNAI	GTATAC	1 cut(s)	821
BssT1I	CCWWGG	5 cut(s)	86, 338, 353, 415, 764
Bst1107I	GTATAC	1 cut(s)	821
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	390
Bst6I	CTCTTC	1 cut(s)	689
BstC8I	GCNNGC	4 cut(s)	131, 486, 547, 665
BstDEI	CTNAG	2 cut(s)	28, 169
BstDSI	CCRYGG	2 cut(s)	386, 415
BstKTI	GATC	4 cut(s)	161, 788, 796, 894
BstMAI	GTCTC	1 cut(s)	865
BstMBI	GATC	4 cut(s)	158, 785, 793, 891
BstMWI	GCNNNNNNNGC	1 cut(s)	601
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	2 cut(s)	177, 261
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	1 cut(s)	315
BstSLI	GKGCMC	1 cut(s)	772
BstV1I	GCAGC	2 cut(s)	248, 679
BstXI	CCANNNNNNTGG	1 cut(s)	104
BstZ17I	GTATAC	1 cut(s)	821
BsuRI	GGCC	6 cut(s)	73, 85, 129, 286, 337, 399
BtgI	CCRYGG	2 cut(s)	386, 415
BtsI	GCAGTG	1 cut(s)	602
BtsIMutI	CAGTG	2 cut(s)	97, 602
Cac8I	GCNNGC	4 cut(s)	131, 486, 547, 665
CciI	TCATGA	1 cut(s)	149
Cfr10I	RCCGGY	1 cut(s)	264
Cfr13I	GGNCC	5 cut(s)	192, 397, 497, 638, 736
Csp6I	GTAC	3 cut(s)	187, 204, 526
CviQI	GTAC	3 cut(s)	187, 204, 526
DdeI	CTNAG	2 cut(s)	28, 169
DpnI	GATC	4 cut(s)	160, 787, 795, 893
DpnII	GATC	4 cut(s)	158, 785, 793, 891
EaeI	YGGCCR	2 cut(s)	71, 335
Eam1104I	CTCTTC	1 cut(s)	689
EarI	CTCTTC	1 cut(s)	689
Eco130I	CCWWGG	5 cut(s)	86, 338, 353, 415, 764
Eco147I	AGGCCT	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	684
Eco31I	GGTCTC	1 cut(s)	865
Eco47I	GGWCC	4 cut(s)	192, 497, 638, 736
Eco88I	CYCGRG	1 cut(s)	324
EcoO109I	RGGNCCY	1 cut(s)	397
EcoRI	GAATTC	1 cut(s)	827
EcoRII	CCWGG	1 cut(s)	286
EcoT14I	CCWWGG	5 cut(s)	86, 338, 353, 415, 764
EcoT38I	GRGCYC	1 cut(s)	684
ErhI	CCWWGG	5 cut(s)	86, 338, 353, 415, 764
FaqI	GGGAC	1 cut(s)	749
FblI	GTMKAC	1 cut(s)	820
Fnu4HI	GCNGC	2 cut(s)	262, 668
FriOI	GRGCYC	1 cut(s)	684
Fsp4HI	GCNGC	2 cut(s)	262, 668
FspBI	CTAG	4 cut(s)	112, 125, 346, 481
GluI	GCNGC	2 cut(s)	262, 668
GsaI	CCCAGC	1 cut(s)	943
HaeIII	GGCC	6 cut(s)	73, 85, 129, 286, 337, 399
HapII	CCGG	1 cut(s)	265
HpaII	CCGG	1 cut(s)	265
HphI	GGTGA	2 cut(s)	463, 549
Hpy166II	GTNNAC	3 cut(s)	97, 312, 821
Hpy188I	TCNGA	2 cut(s)	630, 838
Hpy188III	TCNNGA	2 cut(s)	112, 150
Hpy8I	GTNNAC	3 cut(s)	97, 312, 821
HpyAV	CCTTC	3 cut(s)	410, 583, 726
HpyCH4III	ACNGT	1 cut(s)	390
HpyCH4V	TGCA	5 cut(s)	25, 133, 254, 274, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	601
HpyF3I	CTNAG	2 cut(s)	28, 169
Kzo9I	GATC	4 cut(s)	158, 785, 793, 891
LguI	GCTCTTC	1 cut(s)	689
LmnI	GCTCC	3 cut(s)	370, 592, 838
Lsp1109I	GCAGC	2 cut(s)	248, 679
MaeI	CTAG	4 cut(s)	112, 125, 346, 481
MaeIII	GTNAC	2 cut(s)	723, 843
MalI	GATC	4 cut(s)	160, 787, 795, 893
MboI	GATC	4 cut(s)	158, 785, 793, 891
MboII	GAAGA	5 cut(s)	437, 462, 676, 741, 934
MfeI	CAATTG	1 cut(s)	814
MhlI	GDGCHC	2 cut(s)	684, 772
MlsI	TGGCCA	2 cut(s)	73, 337
MluCI	AATT	3 cut(s)	624, 814, 827
MluNI	TGGCCA	2 cut(s)	73, 337
MmeI	TCCRAC	1 cut(s)	281
MnlI	CCTC	5 cut(s)	320, 388, 850, 908, 912
Mox20I	TGGCCA	2 cut(s)	73, 337
MscI	TGGCCA	2 cut(s)	73, 337
MseI	TTAA	2 cut(s)	758, 954
MslI	CAYNNNNRTG	1 cut(s)	102
Msp20I	TGGCCA	2 cut(s)	73, 337
MspA1I	CMGCKG	1 cut(s)	670
MspI	CCGG	1 cut(s)	265
MspR9I	CCNGG	1 cut(s)	288
MunI	CAATTG	1 cut(s)	814
Mva1269I	GAATGC	1 cut(s)	915
MvaI	CCWGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	1 cut(s)	601
NcoI	CCATGG	1 cut(s)	415
NdeII	GATC	4 cut(s)	158, 785, 793, 891
NlaIV	GGNNCC	6 cut(s)	351, 398, 427, 737, 771, 936
NmuCI	GTSAC	1 cut(s)	723
NspI	RCATGY	2 cut(s)	177, 261
PagI	TCATGA	1 cut(s)	149
PceI	AGGCCT	1 cut(s)	129
PciSI	GCTCTTC	1 cut(s)	689
PctI	GAATGC	1 cut(s)	915
PkrI	GCNGC	2 cut(s)	263, 669
Psp6I	CCWGG	1 cut(s)	286
PspFI	CCCAGC	1 cut(s)	939
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	6 cut(s)	351, 398, 427, 737, 771, 936
PspPI	GGNCC	5 cut(s)	192, 397, 497, 638, 736
PvuII	CAGCTG	1 cut(s)	670
RsaI	GTAC	3 cut(s)	188, 205, 527
RsaNI	GTAC	3 cut(s)	187, 204, 526
RseI	CAYNNNNRTG	1 cut(s)	102
SapI	GCTCTTC	1 cut(s)	689
SaqAI	TTAA	2 cut(s)	758, 954
SatI	GCNGC	2 cut(s)	262, 668
Sau3AI	GATC	4 cut(s)	158, 785, 793, 891
Sau96I	GGNCC	5 cut(s)	192, 397, 497, 638, 736
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	2 cut(s)	684, 772
SfcI	CTRYAG	1 cut(s)	315
SinI	GGWCC	4 cut(s)	192, 497, 638, 736
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	2 cut(s)	406, 529
SmoI	CTYRAG	2 cut(s)	406, 529
Sse9I	AATT	3 cut(s)	624, 814, 827
SseBI	AGGCCT	1 cut(s)	129
SsiI	CCGC	1 cut(s)	560
SspMI	CTAG	4 cut(s)	112, 125, 346, 481
StuI	AGGCCT	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	5 cut(s)	86, 338, 353, 415, 764
TaaI	ACNGT	1 cut(s)	390
TaqI	TCGA	1 cut(s)	650
TasI	AATT	3 cut(s)	624, 814, 827
TatI	WGTACW	3 cut(s)	186, 203, 525
Tru1I	TTAA	2 cut(s)	758, 954
Tru9I	TTAA	2 cut(s)	758, 954
TscAI	CASTG	2 cut(s)	104, 602
TseFI	GTSAC	1 cut(s)	723
TseI	GCWGC	2 cut(s)	261, 667
Tsp45I	GTSAC	1 cut(s)	723
TspDTI	ATGAA	1 cut(s)	495
TspRI	CASTG	2 cut(s)	104, 602
VpaK11BI	GGWCC	4 cut(s)	192, 497, 638, 736
XapI	RAATTY	2 cut(s)	624, 827
XbaI	TCTAGA	1 cut(s)	111
XceI	RCATGY	2 cut(s)	177, 261
XmiI	GTMKAC	1 cut(s)	820
XspI	CTAG	4 cut(s)	112, 125, 346, 481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.