Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Reverse (-)

57041053 .. 57045608

Gene Structure 4556 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20870

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTTTATGGGGTTGATCCGCCGGGCAAAGCTTGTGTTAGCAGTGATTTTGGTGCAGCTCGGGTATGCTGGGCTTTCGATAATCTCAATGTTTTCTCTAAAGAAGGGAATGAGTCCTTCCACATTCATCGTGTACCGAATGGCCATTGCTACTATTGTTCTAGCTCCATTTGCATTCATTTTGGAGAGGAATTCAAGACCTCCGATGACTTGGTCCATCATTGCAAAGATAATGTTGCTGAGCCTTTTCGACCCTGCAATTATCTTAAGATCCTACCCTTGTCAGCTCTCTCTCACAGCAATGATATGCTTTTGGGGTATGGTGGAAGGAGCAATACTGGCTTTTGTAGTTGAAAGGGGACAAAGTGGAGTCTGGTCCATACAATTCAACATCAAACTTGTAGCAGCATTTTATGGGGCAATGCAATCTGTTGTTGCTTATTATGTGATGGGAATGGTAGTGAAGGAAAAGGGACCTGTTTTTTACTCGGCTTTTAATCCCTTGGCCACAGTAATGGTTGCAATCCTGGGTTCCTTTGTTTTAGCAGAACAATTGTACCTTGGGAGTGTTATCGGAGCTGCTGTAATCATCATTGGTCTGTATCTCATTCTCTGGGGAAAAGCAAAGGACCAGTCTCCTCCATCACAGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

217

Amino Acids

23.75

Weight (kDa)

9.65

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	101 - 204	4.1e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	19
AclWI	GGATC	2 cut(s)	10, 264
AcoI	YGGCCR	2 cut(s)	141, 504
AcsI	RAATTY	1 cut(s)	190
AfaI	GTAC	2 cut(s)	134, 557
AflII	CTTAAG	1 cut(s)	265
AgsI	TTSAA	3 cut(s)	195, 353, 388
AjnI	CCWGG	1 cut(s)	525
AluBI	AGCT	5 cut(s)	31, 58, 164, 286, 578
AluI	AGCT	5 cut(s)	31, 58, 164, 286, 578
Alw26I	GTCTC	1 cut(s)	639
AlwI	GGATC	2 cut(s)	10, 264
Ama87I	CYCGRG	1 cut(s)	59
AoxI	GGCC	2 cut(s)	141, 504
ApeKI	GCWGC	3 cut(s)	55, 404, 578
ApoI	RAATTY	1 cut(s)	190
ArsI	GACNNNNNNTTYG	2 cut(s)	617, 649
AspS9I	GGNCC	4 cut(s)	213, 375, 473, 628
AsuC2I	CCSGG	1 cut(s)	23
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	4 cut(s)	213, 375, 473, 628
BaeI	ACNNNNGTAYC	2 cut(s)	539, 572
BalI	TGGCCA	2 cut(s)	143, 506
BarI	GAAGNNNNNNTAC	2 cut(s)	318, 350
BbvI	GCAGC	3 cut(s)	67, 416, 565
BccI	CCATC	3 cut(s)	224, 442, 649
BciT130I	CCWGG	1 cut(s)	527
BcnI	CCSGG	1 cut(s)	23
BcoDI	GTCTC	1 cut(s)	639
BfaI	CTAG	1 cut(s)	161
BfrI	CTTAAG	1 cut(s)	265
BisI	GCNGC	3 cut(s)	56, 405, 579
BlpI	GCTNAGC	1 cut(s)	239
BlsI	GCNGC	3 cut(s)	57, 406, 580
Bme1390I	CCNGG	2 cut(s)	23, 527
Bme18I	GGWCC	4 cut(s)	213, 375, 473, 628
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	4 cut(s)	213, 375, 473, 628
BmiI	GGNNCC	2 cut(s)	474, 532
BmrFI	CCNGG	2 cut(s)	23, 527
Bpu1102I	GCTNAGC	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	23
BsaJI	CCNNGG	3 cut(s)	501, 526, 559
BsaXI	ACNNNNNCTCC	2 cut(s)	567, 597
Bse1I	ACTGG	2 cut(s)	342, 631
Bse3DI	GCAATG	4 cut(s)	144, 219, 306, 426
BseBI	CCWGG	1 cut(s)	527
BseDI	CCNNGG	3 cut(s)	501, 526, 559
BseMI	GCAATG	4 cut(s)	144, 219, 306, 426
BseMII	CTCAG	1 cut(s)	230
BseNI	ACTGG	2 cut(s)	342, 631
BseRI	GAGGAG	1 cut(s)	627
BseXI	GCAGC	3 cut(s)	67, 416, 565
BseYI	CCCAGC	1 cut(s)	68
BsgI	GTGCAG	1 cut(s)	74
BshFI	GGCC	2 cut(s)	143, 506
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	22
BslFI	GGGAC	2 cut(s)	372, 486
BsmAI	GTCTC	1 cut(s)	639
BsmFI	GGGAC	2 cut(s)	372, 486
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	2 cut(s)	143, 506
BsoBI	CYCGRG	1 cut(s)	59
Bsp143I	GATC	2 cut(s)	15, 269
Bsp1720I	GCTNAGC	1 cut(s)	239
BspACI	CCGC	1 cut(s)	19
BspANI	GGCC	2 cut(s)	143, 506
BspCNI	CTCAG	1 cut(s)	231
BspLI	GGNNCC	2 cut(s)	474, 532
BspPI	GGATC	2 cut(s)	10, 264
BspTI	CTTAAG	1 cut(s)	265
BsrDI	GCAATG	4 cut(s)	144, 219, 306, 426
BsrI	ACTGG	2 cut(s)	342, 631
BssECI	CCNNGG	3 cut(s)	501, 526, 559
BssMI	GATC	2 cut(s)	15, 269
BssT1I	CCWWGG	2 cut(s)	501, 559
Bst2UI	CCWGG	1 cut(s)	527
Bst4CI	ACNGT	2 cut(s)	511, 648
BstAFI	CTTAAG	1 cut(s)	265
BstDEI	CTNAG	1 cut(s)	239
BstKTI	GATC	2 cut(s)	18, 272
BstMAI	GTCTC	1 cut(s)	639
BstMBI	GATC	2 cut(s)	15, 269
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 338
BstNI	CCWGG	1 cut(s)	527
BstSCI	CCNGG	2 cut(s)	21, 525
BstV1I	GCAGC	3 cut(s)	67, 416, 565
BstX2I	RGATCY	1 cut(s)	269
BstXI	CCANNNNNNTGG	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	269
BsuRI	GGCC	2 cut(s)	143, 506
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	2 cut(s)	48, 653
Cfr13I	GGNCC	4 cut(s)	213, 375, 473, 628
Csp6I	GTAC	2 cut(s)	133, 556
CviQI	GTAC	2 cut(s)	133, 556
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	2 cut(s)	17, 271
DpnII	GATC	2 cut(s)	15, 269
EaeI	YGGCCR	2 cut(s)	141, 504
EciI	GGCGGA	1 cut(s)	8
Eco130I	CCWWGG	2 cut(s)	501, 559
Eco47I	GGWCC	4 cut(s)	213, 375, 473, 628
Eco88I	CYCGRG	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	473
EcoRI	GAATTC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	525
EcoT14I	CCWWGG	2 cut(s)	501, 559
ErhI	CCWWGG	2 cut(s)	501, 559
FaiI	YATR	7 cut(s)	8, 66, 307, 320, 380, 414, 444
FaqI	GGGAC	2 cut(s)	372, 486
Fnu4HI	GCNGC	3 cut(s)	56, 405, 579
Fsp4HI	GCNGC	3 cut(s)	56, 405, 579
FspBI	CTAG	1 cut(s)	161
GluI	GCNGC	3 cut(s)	56, 405, 579
GsaI	CCCAGC	1 cut(s)	72
HaeIII	GGCC	2 cut(s)	143, 506
HapII	CCGG	1 cut(s)	22
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	2 cut(s)	112, 369
HpaII	CCGG	1 cut(s)	22
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	204, 575
Hpy188III	TCNNGA	1 cut(s)	195
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	4 cut(s)	97, 126, 320, 457
HpyCH4III	ACNGT	2 cut(s)	511, 648
HpyCH4V	TGCA	6 cut(s)	55, 173, 224, 257, 424, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 338
HpyF3I	CTNAG	1 cut(s)	239
Kzo9I	GATC	2 cut(s)	15, 269
LmnI	GCTCC	3 cut(s)	169, 329, 575
Lsp1109I	GCAGC	3 cut(s)	67, 416, 565
MaeI	CTAG	1 cut(s)	161
MalI	GATC	2 cut(s)	17, 271
MboI	GATC	2 cut(s)	15, 269
MfeI	CAATTG	1 cut(s)	551
MflI	RGATCY	1 cut(s)	269
MlsI	TGGCCA	2 cut(s)	143, 506
MluCI	AATT	4 cut(s)	190, 258, 383, 551
MluNI	TGGCCA	2 cut(s)	143, 506
MlyI	GAGTC	2 cut(s)	121, 378
MnlI	CCTC	3 cut(s)	180, 210, 648
Mox20I	TGGCCA	2 cut(s)	143, 506
MscI	TGGCCA	2 cut(s)	143, 506
MseI	TTAA	2 cut(s)	266, 495
MslI	CAYNNNNRTG	3 cut(s)	299, 512, 646
Msp20I	TGGCCA	2 cut(s)	143, 506
MspCI	CTTAAG	1 cut(s)	265
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	2 cut(s)	23, 527
MunI	CAATTG	1 cut(s)	551
Mva1269I	GAATGC	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	527
MwoI	GCNNNNNNNGC	2 cut(s)	170, 338
NciI	CCSGG	1 cut(s)	23
NdeII	GATC	2 cut(s)	15, 269
NlaIV	GGNNCC	2 cut(s)	474, 532
NmeAIII	GCCGAG	1 cut(s)	467
PctI	GAATGC	1 cut(s)	173
PflFI	GACNNNGTC	1 cut(s)	211
PkrI	GCNGC	3 cut(s)	57, 406, 580
PleI	GAGTC	2 cut(s)	120, 377
PpsI	GAGTC	2 cut(s)	120, 377
PpuMI	RGGWCCY	1 cut(s)	473
Psp5II	RGGWCCY	1 cut(s)	473
Psp6I	CCWGG	1 cut(s)	525
PspFI	CCCAGC	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	525
PspN4I	GGNNCC	2 cut(s)	474, 532
PspPI	GGNCC	4 cut(s)	213, 375, 473, 628
PspPPI	RGGWCCY	1 cut(s)	473
PsuI	RGATCY	1 cut(s)	269
PsyI	GACNNNGTC	1 cut(s)	211
RsaI	GTAC	2 cut(s)	134, 557
RsaNI	GTAC	2 cut(s)	133, 556
RseI	CAYNNNNRTG	3 cut(s)	299, 512, 646
SaqAI	TTAA	2 cut(s)	266, 495
SatI	GCNGC	3 cut(s)	56, 405, 579
Sau3AI	GATC	2 cut(s)	15, 269
Sau96I	GGNCC	4 cut(s)	213, 375, 473, 628
SchI	GAGTC	2 cut(s)	121, 378
ScrFI	CCNGG	2 cut(s)	23, 527
SetI	ASST	8 cut(s)	33, 60, 166, 202, 288, 478, 561, 580
SinI	GGWCC	4 cut(s)	213, 375, 473, 628
SmiMI	CAYNNNNRTG	3 cut(s)	299, 512, 646
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
Sse9I	AATT	4 cut(s)	190, 258, 383, 551
SsiI	CCGC	1 cut(s)	19
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	2 cut(s)	21, 525
StyI	CCWWGG	2 cut(s)	501, 559
TaaI	ACNGT	2 cut(s)	511, 648
TaqI	TCGA	2 cut(s)	77, 249
TasI	AATT	4 cut(s)	190, 258, 383, 551
Tru1I	TTAA	2 cut(s)	266, 495
Tru9I	TTAA	2 cut(s)	266, 495
TscAI	CASTG	2 cut(s)	48, 653
TseI	GCWGC	3 cut(s)	55, 404, 578
TspDTI	ATGAA	2 cut(s)	115, 166
TspRI	CASTG	2 cut(s)	48, 653
Tth111I	GACNNNGTC	1 cut(s)	211
Vha464I	CTTAAG	1 cut(s)	265
VpaK11BI	GGWCC	4 cut(s)	213, 375, 473, 628
XapI	RAATTY	1 cut(s)	190
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.