RchiOBHm_Chr1g0366071

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
56784909 .. 56785189
281 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59065

Sequence Viewer

Length: 189 bp
ATGAAGCACCCTACAGCCACTTTCTCATCTGCCATGTCCAACATTCTTCCTGCTTTTGCATTTTTAATGGCCTGGATTTTCCGGCTGGAGGAGGTCAGCTTTAAGAGTCTGCATGGCCTAGCAAAGGTCTTAGGAACTTTAATCACAGTTGGTAGTCAAAGGCCCTTCTTTGAGTTTACCATGGACTAA

Protein Analysis

62

Amino Acids

6.97

Weight (kDa)

8.3

Isoelectric Point (pI)

46.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000617)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39510
fragaria_vesca FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 2 cut(s) 88, 124
AjnI CCWGG 1 cut(s) 71
AluBI AGCT 1 cut(s) 99
AluI AGCT 1 cut(s) 99
AoxI GGCC 3 cut(s) 69, 115, 161
AspS9I GGNCC 1 cut(s) 162
BciT130I CCWGG 1 cut(s) 73
BfaI CTAG 1 cut(s) 119
BfmI CTRYAG 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 73
BpmI CTGGAG 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 180
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 124
BseBI CCWGG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 180
BseLI CCNNNNNNNGG 2 cut(s) 88, 124
BseRI GAGGAG 1 cut(s) 104
BshFI GGCC 3 cut(s) 71, 117, 163
BsiSI CCGG 1 cut(s) 82
BslI CCNNNNNNNGG 2 cut(s) 88, 124
BsnI GGCC 3 cut(s) 71, 117, 163
Bsp19I CCATGG 1 cut(s) 180
BspANI GGCC 3 cut(s) 71, 117, 163
BssECI CCNNGG 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 73
Bst4CI ACNGT 1 cut(s) 148
BstDEI CTNAG 1 cut(s) 130
BstDSI CCRYGG 1 cut(s) 180
BstENI CCTNNNNNAGG 1 cut(s) 122
BstNI CCWGG 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 71
BstSFI CTRYAG 1 cut(s) 12
BsuRI GGCC 3 cut(s) 71, 117, 163
BtgI CCRYGG 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 162
CviAII CATG 3 cut(s) 34, 113, 181
CviJI RGCY 6 cut(s) 17, 71, 85, 99, 117, 163
CviKI_1 RGCY 6 cut(s) 17, 71, 85, 99, 117, 163
DdeI CTNAG 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 180
EcoNI CCTNNNNNAGG 1 cut(s) 122
EcoO109I RGGNCCY 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 71
EcoT14I CCWWGG 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 3 cut(s) 37, 116, 184
FaiI YATR 3 cut(s) 35, 114, 182
FatI CATG 3 cut(s) 33, 112, 180
FspBI CTAG 1 cut(s) 119
GsuI CTGGAG 1 cut(s) 107
HaeIII GGCC 3 cut(s) 71, 117, 163
HapII CCGG 1 cut(s) 82
Hin1II CATG 3 cut(s) 37, 116, 184
HinfI GANTC 1 cut(s) 106
HpaII CCGG 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 177
Hpy8I GTNNAC 1 cut(s) 177
HpyAV CCTTC 1 cut(s) 175
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 2 cut(s) 59, 112
HpyF3I CTNAG 1 cut(s) 130
Hsp92II CATG 3 cut(s) 37, 116, 184
LpnPI CCDG 5 cut(s) 58, 63, 71, 85, 95
MaeI CTAG 1 cut(s) 119
MboII GAAGA 1 cut(s) 38
MlyI GAGTC 1 cut(s) 115
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 2 cut(s) 82, 85
MseI TTAA 3 cut(s) 65, 102, 140
MspI CCGG 1 cut(s) 82
MspR9I CCNGG 1 cut(s) 73
MvaI CCWGG 1 cut(s) 73
NcoI CCATGG 1 cut(s) 180
NlaIII CATG 3 cut(s) 37, 116, 184
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 71
PspGI CCWGG 1 cut(s) 71
PspPI GGNCC 1 cut(s) 162
SaqAI TTAA 3 cut(s) 65, 102, 140
Sau96I GGNCC 1 cut(s) 162
SchI GAGTC 1 cut(s) 115
ScrFI CCNGG 1 cut(s) 73
SetI ASST 3 cut(s) 96, 101, 129
SfcI CTRYAG 1 cut(s) 12
SgeI CNNG 8 cut(s) 46, 62, 84, 85, 94, 98, 125, 131
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 71
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 148
Tru1I TTAA 3 cut(s) 65, 102, 140
Tru9I TTAA 3 cut(s) 65, 102, 140
TspDTI ATGAA 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 122
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.