Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Forward (+)

11036589 .. 11045302

Gene Structure 8714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00290520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCCATTGCAACTGCCTTGGCAATTCCATTGGCATGGTACATAGAGAGACATTCTAGGCCTACAATGACCATCAAGGTCATGGCAAAGATCATGCTGCTACGCATGTTTGAGCTGGAGAATGTGGACTACAGACACCCGAGAGGATTGACCAAGGTTGTAGGAACCTTGGTTACTGTGGTAGGAGCAATCCTCCTTACCATGGTCAAGGGGCCTTCCCTCAACTTGCCATGGGCAAGGGACCACGAAAAAAATCATTCTTCAGCGCCCAAAGTCAAGGGTGCTCTCTTCCTAACACTAGCCTGCTTCTGCTGGTCCTGTTTCATAATCCTGCAAGCTCTTGTATCGGGGGCTGCATATTATGTCATGGGACTGGTTGTGAAGAAGAAGGGACCAGTTTTCTACTCGGCCTTTAACCCCTTGGCCACTCTACTTGTGGCGATTTTGGGGTCATTTTTTCTGCATGAACAATTGTATACTGGGAGCAATAGTTCTGAATCAGGAGCTAGCTCAAGTACTGAGGTCAAGCTCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

178

Amino Acids

19.53

Weight (kDa)

9.68

Isoelectric Point (pI)

32.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	476
AciI	CCGC	1 cut(s)	532
AcoI	YGGCCR	2 cut(s)	3, 423
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	2 cut(s)	41, 517
AfiI	CCNNNNNNNGG	1 cut(s)	202
AloI	GAACNNNNNNTCC	2 cut(s)	475, 507
AluBI	AGCT	5 cut(s)	115, 338, 506, 510, 529
AluI	AGCT	5 cut(s)	115, 338, 506, 510, 529
Alw21I	GWGCWC	1 cut(s)	286
Alw26I	GTCTC	1 cut(s)	43
Ama87I	CYCGRG	1 cut(s)	139
AoxI	GGCC	5 cut(s)	3, 59, 212, 408, 423
ApeKI	GCWGC	2 cut(s)	97, 353
AspLEI	GCGC	1 cut(s)	268
AspS9I	GGNCC	4 cut(s)	212, 241, 315, 392
AsuNHI	GCTAGC	1 cut(s)	506
AvaI	CYCGRG	1 cut(s)	139
AvaII	GGWCC	3 cut(s)	241, 315, 392
BalI	TGGCCA	2 cut(s)	5, 425
Bbv12I	GWGCWC	1 cut(s)	286
BbvI	GCAGC	2 cut(s)	84, 340
BccI	CCATC	1 cut(s)	80
BcoDI	GTCTC	1 cut(s)	43
BfaI	CTAG	3 cut(s)	57, 299, 507
BfmI	CTRYAG	1 cut(s)	130
BfoI	RGCGCY	1 cut(s)	269
BisI	GCNGC	2 cut(s)	98, 354
BlsI	GCNGC	2 cut(s)	99, 355
BmcAI	AGTACT	1 cut(s)	517
Bme18I	GGWCC	3 cut(s)	241, 315, 392
BmeT110I	CYCGRG	1 cut(s)	139
BmgT120I	GGNCC	4 cut(s)	212, 241, 315, 392
BmiI	GGNNCC	4 cut(s)	166, 213, 242, 393
BmrI	ACTGGG	1 cut(s)	489
BmtI	GCTAGC	1 cut(s)	510
BmuI	ACTGGG	1 cut(s)	489
BplI	GAGNNNNNCTC	2 cut(s)	177, 209
BpmI	CTGGAG	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	496
BsaJI	CCNNGG	6 cut(s)	18, 153, 168, 201, 230, 420
BsaXI	ACNNNNNCTCC	2 cut(s)	475, 505
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse1I	ACTGG	3 cut(s)	378, 395, 484
Bse3DI	GCAATG	1 cut(s)	6
BseDI	CCNNGG	6 cut(s)	18, 153, 168, 201, 230, 420
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMI	GCAATG	1 cut(s)	6
BseMII	CTCAG	1 cut(s)	510
BseNI	ACTGG	3 cut(s)	378, 395, 484
BseXI	GCAGC	2 cut(s)	84, 340
BshFI	GGCC	5 cut(s)	5, 61, 214, 410, 425
BsiHKAI	GWGCWC	1 cut(s)	286
BsiHKCI	CYCGRG	1 cut(s)	139
BslFI	GGGAC	3 cut(s)	254, 384, 405
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmAI	GTCTC	1 cut(s)	43
BsmFI	GGGAC	3 cut(s)	254, 384, 405
BsnI	GGCC	5 cut(s)	5, 61, 214, 410, 425
BsoBI	CYCGRG	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	1 cut(s)	90
Bsp19I	CCATGG	2 cut(s)	201, 230
BspACI	CCGC	1 cut(s)	532
BspANI	GGCC	5 cut(s)	5, 61, 214, 410, 425
BspCNI	CTCAG	1 cut(s)	511
BspLI	GGNNCC	4 cut(s)	166, 213, 242, 393
BspOI	GCTAGC	1 cut(s)	510
BsrDI	GCAATG	1 cut(s)	6
BsrI	ACTGG	3 cut(s)	378, 395, 484
BssECI	CCNNGG	6 cut(s)	18, 153, 168, 201, 230, 420
BssMI	GATC	1 cut(s)	90
BssNAI	GTATAC	1 cut(s)	477
BssT1I	CCWWGG	6 cut(s)	18, 153, 168, 201, 230, 420
Bst1107I	GTATAC	1 cut(s)	477
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	293
BstC8I	GCNNGC	3 cut(s)	304, 336, 508
BstDEI	CTNAG	1 cut(s)	519
BstDSI	CCRYGG	2 cut(s)	201, 230
BstH2I	RGCGCY	1 cut(s)	269
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	1 cut(s)	93
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	90
BstNSI	RCATGY	1 cut(s)	109
BstSFI	CTRYAG	1 cut(s)	130
BstV1I	GCAGC	2 cut(s)	84, 340
BstXI	CCANNNNNNTGG	1 cut(s)	36
BstZ17I	GTATAC	1 cut(s)	477
BsuRI	GGCC	5 cut(s)	5, 61, 214, 410, 425
BtgI	CCRYGG	2 cut(s)	201, 230
Cac8I	GCNNGC	3 cut(s)	304, 336, 508
CfoI	GCGC	1 cut(s)	268
Cfr13I	GGNCC	4 cut(s)	212, 241, 315, 392
Csp6I	GTAC	2 cut(s)	40, 516
CspCI	CAANNNNNGTGG	2 cut(s)	415, 450
CviAII	CATG	8 cut(s)	36, 82, 94, 106, 202, 231, 367, 464
CviQI	GTAC	2 cut(s)	40, 516
DdeI	CTNAG	1 cut(s)	519
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
EaeI	YGGCCR	2 cut(s)	3, 423
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
Eco130I	CCWWGG	6 cut(s)	18, 153, 168, 201, 230, 420
Eco147I	AGGCCT	1 cut(s)	61
Eco47I	GGWCC	3 cut(s)	241, 315, 392
Eco57I	CTGAAG	1 cut(s)	246
Eco88I	CYCGRG	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	212
EcoT14I	CCWWGG	6 cut(s)	18, 153, 168, 201, 230, 420
ErhI	CCWWGG	6 cut(s)	18, 153, 168, 201, 230, 420
FaeI	CATG	8 cut(s)	39, 85, 97, 109, 205, 234, 370, 467
FaqI	GGGAC	3 cut(s)	254, 384, 405
FatI	CATG	8 cut(s)	35, 81, 93, 105, 201, 230, 366, 463
FblI	GTMKAC	1 cut(s)	476
Fnu4HI	GCNGC	2 cut(s)	98, 354
Fsp4HI	GCNGC	2 cut(s)	98, 354
FspBI	CTAG	3 cut(s)	57, 299, 507
GlaI	GCGC	1 cut(s)	267
GluI	GCNGC	2 cut(s)	98, 354
GsuI	CTGGAG	1 cut(s)	137
HaeII	RGCGCY	1 cut(s)	269
HaeIII	GGCC	5 cut(s)	5, 61, 214, 410, 425
HhaI	GCGC	1 cut(s)	268
Hin1II	CATG	8 cut(s)	39, 85, 97, 109, 205, 234, 370, 467
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
HinfI	GANTC	1 cut(s)	497
Hpy166II	GTNNAC	2 cut(s)	127, 477
Hpy188I	TCNGA	1 cut(s)	496
Hpy188III	TCNNGA	1 cut(s)	501
Hpy8I	GTNNAC	2 cut(s)	127, 477
HpyAV	CCTTC	2 cut(s)	225, 382
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	4 cut(s)	11, 334, 356, 463
HpyF3I	CTNAG	1 cut(s)	519
Hsp92II	CATG	8 cut(s)	39, 85, 97, 109, 205, 234, 370, 467
HspAI	GCGC	1 cut(s)	266
Kzo9I	GATC	1 cut(s)	90
LmnI	GCTCC	4 cut(s)	185, 483, 503, 534
LpnPI	CCDG	9 cut(s)	101, 298, 316, 331, 344, 359, 408, 465, 486
Lsp1109I	GCAGC	2 cut(s)	84, 340
MaeI	CTAG	3 cut(s)	57, 299, 507
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MboII	GAAGA	4 cut(s)	252, 280, 394, 397
MfeI	CAATTG	1 cut(s)	470
MhlI	GDGCHC	1 cut(s)	286
MlsI	TGGCCA	2 cut(s)	5, 425
MluCI	AATT	2 cut(s)	24, 470
MluNI	TGGCCA	2 cut(s)	5, 425
MnlI	CCTC	4 cut(s)	137, 203, 230, 514
Mox20I	TGGCCA	2 cut(s)	5, 425
MscI	TGGCCA	2 cut(s)	5, 425
MseI	TTAA	1 cut(s)	414
MslI	CAYNNNNRTG	1 cut(s)	34
Msp20I	TGGCCA	2 cut(s)	5, 425
MspA1I	CMGCKG	1 cut(s)	534
MunI	CAATTG	1 cut(s)	470
NcoI	CCATGG	2 cut(s)	201, 230
NdeII	GATC	1 cut(s)	90
NheI	GCTAGC	1 cut(s)	506
NlaIII	CATG	8 cut(s)	39, 85, 97, 109, 205, 234, 370, 467
NlaIV	GGNNCC	4 cut(s)	166, 213, 242, 393
NmeAIII	GCCGAG	1 cut(s)	386
NspI	RCATGY	1 cut(s)	109
PceI	AGGCCT	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	497
PkrI	GCNGC	2 cut(s)	99, 355
PspN4I	GGNNCC	4 cut(s)	166, 213, 242, 393
PspPI	GGNCC	4 cut(s)	212, 241, 315, 392
PsrI	GAACNNNNNNTAC	2 cut(s)	157, 189
RsaI	GTAC	2 cut(s)	41, 517
RsaNI	GTAC	2 cut(s)	40, 516
RseI	CAYNNNNRTG	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	2 cut(s)	98, 354
Sau3AI	GATC	1 cut(s)	90
Sau96I	GGNCC	4 cut(s)	212, 241, 315, 392
ScaI	AGTACT	1 cut(s)	517
SduI	GDGCHC	1 cut(s)	286
SetI	ASST	9 cut(s)	81, 117, 159, 170, 340, 508, 512, 525, 531
SfcI	CTRYAG	1 cut(s)	130
SinI	GGWCC	3 cut(s)	241, 315, 392
SmiMI	CAYNNNNRTG	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
Sse9I	AATT	2 cut(s)	24, 470
SseBI	AGGCCT	1 cut(s)	61
SsiI	CCGC	1 cut(s)	532
SspMI	CTAG	3 cut(s)	57, 299, 507
StuI	AGGCCT	1 cut(s)	61
StyI	CCWWGG	6 cut(s)	18, 153, 168, 201, 230, 420
TaaI	ACNGT	1 cut(s)	178
TasI	AATT	2 cut(s)	24, 470
TatI	WGTACW	1 cut(s)	515
TfiI	GAWTC	1 cut(s)	497
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TseI	GCWGC	2 cut(s)	97, 353
TspDTI	ATGAA	2 cut(s)	313, 480
VpaK11BI	GGWCC	3 cut(s)	241, 315, 392
XceI	RCATGY	1 cut(s)	109
XcmI	CCANNNNNNNNNTGG	2 cut(s)	79, 433
XmiI	GTMKAC	1 cut(s)	476
XspI	CTAG	3 cut(s)	57, 299, 507
ZrmI	AGTACT	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.