Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Reverse (-)

57457472 .. 57460156

Gene Structure 2685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G029750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCCATTGCAACTGCCTTGGCAATTCCATTGGCATGGTATATAGAGAGACATTCTAGGCCTACAATGACCATCAAGGTCATGGCAAAGATCATGCTGCTAAGCATGTTTGACCCTGTAATGGACCAAAACTTATACTATGTGGGAATGAAGAACTCCAATGCCACATTCACATCGGCCATGTGCAACATGCTTCCGGTGTTTGCGTTTTTCATGGCCTGGGTTTTCAGGCTGGAGAATGTGGACTGCAGACACCCGAGAGGATTGACCAAGGTTGTAGGAACCTTGGTTACTGTGGTAGGAGCAATTCTCCTTACCATGGTCAAGGGGCCTTCCCTCAACTTGTCATGGGCAAGGGACCACGACAAAAATCATTCTTCAGCGCCCAAAGTCAAGGGTGCTCTCTTCCTAACACTAGCCTGCTTCTGCTGGTCCTGTTTCATAATCCTGCAAATAAGTGCCAATGTACTCAAGTCCTACCCCTGCAAGCTCTCTCTCACGGCTTTGATTTGCTTCTGGGGTATGGTGGAAGGAGCAGTGGTGGCTGTTGTGGTTGAAAGGGGGAATTTGGAAGCATGGTCCATACACTTGGACTTGAAGTTGCTCGCAGCTGTTTATGGGGCTCTTGTATCGGGGGCTGCATATTATGTCATGGGACTGGTTGTGAAGAAGAAGGGACCAGTTTTCTACTCGGCCTTTAACCCCTTGGCCACTCTACTTGTGGCGATTTTGGGCTCATTTTTTCTGCATGAACAATTGTATACTGGGAGCAACTTGGTTTTCACATATCTGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

265

Amino Acids

29.25

Weight (kDa)

9.24

Isoelectric Point (pI)

20.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	1 - 106	1.5e-08	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	761
AcoI	YGGCCR	3 cut(s)	3, 177, 708
AcsI	RAATTY	1 cut(s)	565
AcuI	CTGAAG	1 cut(s)	363
AfaI	GTAC	1 cut(s)	468
AfiI	CCNNNNNNNGG	2 cut(s)	121, 319
AgsI	TTSAA	2 cut(s)	557, 598
AjnI	CCWGG	1 cut(s)	218
AjuI	GAANNNNNNNTTGG	2 cut(s)	152, 184
AluBI	AGCT	2 cut(s)	490, 611
AluI	AGCT	2 cut(s)	490, 611
Alw21I	GWGCWC	1 cut(s)	403
Alw26I	GTCTC	1 cut(s)	43
Ama87I	CYCGRG	1 cut(s)	256
AoxI	GGCC	7 cut(s)	3, 59, 177, 216, 329, 693, 708
ApeKI	GCWGC	3 cut(s)	97, 608, 638
ApoI	RAATTY	1 cut(s)	565
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	6 cut(s)	124, 329, 358, 432, 579, 677
AvaI	CYCGRG	1 cut(s)	256
AvaII	GGWCC	5 cut(s)	124, 358, 432, 579, 677
BalI	TGGCCA	2 cut(s)	5, 710
BanII	GRGCYC	2 cut(s)	625, 737
Bbv12I	GWGCWC	1 cut(s)	403
BbvI	GCAGC	3 cut(s)	84, 620, 625
BccI	CCATC	1 cut(s)	80
BceAI	ACGGC	1 cut(s)	516
BciT130I	CCWGG	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	43
BfaI	CTAG	2 cut(s)	57, 416
BfmI	CTRYAG	1 cut(s)	247
BfoI	RGCGCY	1 cut(s)	386
BisI	GCNGC	3 cut(s)	98, 609, 639
BlpI	GCTNAGC	1 cut(s)	101
BlsI	GCNGC	3 cut(s)	99, 610, 640
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	5 cut(s)	124, 358, 432, 579, 677
BmeT110I	CYCGRG	1 cut(s)	256
BmgT120I	GGNCC	6 cut(s)	124, 329, 358, 432, 579, 677
BmiI	GGNNCC	4 cut(s)	283, 330, 359, 678
BmrFI	CCNGG	1 cut(s)	220
BmrI	ACTGGG	1 cut(s)	774
BmuI	ACTGGG	1 cut(s)	774
BplI	GAGNNNNNCTC	2 cut(s)	294, 326
BpmI	CTGGAG	1 cut(s)	254
Bpu1102I	GCTNAGC	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	455
BsaJI	CCNNGG	6 cut(s)	18, 219, 270, 285, 318, 705
BsaWI	WCCGGW	1 cut(s)	196
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 319
Bse1I	ACTGG	3 cut(s)	663, 680, 769
Bse3DI	GCAATG	1 cut(s)	6
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	6 cut(s)	18, 219, 270, 285, 318, 705
BseLI	CCNNNNNNNGG	2 cut(s)	121, 319
BseMI	GCAATG	1 cut(s)	6
BseNI	ACTGG	3 cut(s)	663, 680, 769
BseXI	GCAGC	3 cut(s)	84, 620, 625
BshFI	GGCC	7 cut(s)	5, 61, 179, 218, 331, 695, 710
BsiHKAI	GWGCWC	1 cut(s)	403
BsiHKCI	CYCGRG	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	197
BslFI	GGGAC	3 cut(s)	371, 669, 690
BslI	CCNNNNNNNGG	2 cut(s)	121, 319
BsmAI	GTCTC	1 cut(s)	43
BsmFI	GGGAC	3 cut(s)	371, 669, 690
BsnI	GGCC	7 cut(s)	5, 61, 179, 218, 331, 695, 710
BsoBI	CYCGRG	1 cut(s)	256
Bsp1286I	GDGCHC	3 cut(s)	403, 625, 737
Bsp143I	GATC	2 cut(s)	90, 792
Bsp1720I	GCTNAGC	1 cut(s)	101
Bsp19I	CCATGG	1 cut(s)	318
BspANI	GGCC	7 cut(s)	5, 61, 179, 218, 331, 695, 710
BspLI	GGNNCC	4 cut(s)	283, 330, 359, 678
BspMAI	CTGCAG	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	6
BsrI	ACTGG	3 cut(s)	663, 680, 769
BssECI	CCNNGG	6 cut(s)	18, 219, 270, 285, 318, 705
BssMI	GATC	2 cut(s)	90, 792
BssNAI	GTATAC	1 cut(s)	762
BssT1I	CCWWGG	5 cut(s)	18, 270, 285, 318, 705
Bst1107I	GTATAC	1 cut(s)	762
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	1 cut(s)	295
Bst6I	CTCTTC	1 cut(s)	410
BstC8I	GCNNGC	3 cut(s)	421, 488, 606
BstDEI	CTNAG	1 cut(s)	101
BstDSI	CCRYGG	1 cut(s)	318
BstH2I	RGCGCY	1 cut(s)	386
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	2 cut(s)	93, 795
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	2 cut(s)	90, 792
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNI	CCWGG	1 cut(s)	220
BstNSI	RCATGY	2 cut(s)	109, 193
BstSCI	CCNGG	1 cut(s)	218
BstSFI	CTRYAG	1 cut(s)	247
BstV1I	GCAGC	3 cut(s)	84, 620, 625
BstXI	CCANNNNNNTGG	2 cut(s)	36, 589
BstZ17I	GTATAC	1 cut(s)	762
BsuRI	GGCC	7 cut(s)	5, 61, 179, 218, 331, 695, 710
BtgI	CCRYGG	1 cut(s)	318
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	1 cut(s)	543
Cac8I	GCNNGC	3 cut(s)	421, 488, 606
CfoI	GCGC	1 cut(s)	385
Cfr13I	GGNCC	6 cut(s)	124, 329, 358, 432, 579, 677
Csp6I	GTAC	1 cut(s)	467
CspCI	CAANNNNNGTGG	2 cut(s)	700, 735
CviQI	GTAC	1 cut(s)	467
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	2 cut(s)	92, 794
DpnII	GATC	2 cut(s)	90, 792
EaeI	YGGCCR	3 cut(s)	3, 177, 708
Eam1104I	CTCTTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	410
Eco130I	CCWWGG	5 cut(s)	18, 270, 285, 318, 705
Eco147I	AGGCCT	1 cut(s)	61
Eco24I	GRGCYC	2 cut(s)	625, 737
Eco47I	GGWCC	5 cut(s)	124, 358, 432, 579, 677
Eco57I	CTGAAG	1 cut(s)	363
Eco88I	CYCGRG	1 cut(s)	256
EcoO109I	RGGNCCY	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	218
EcoT14I	CCWWGG	5 cut(s)	18, 270, 285, 318, 705
EcoT38I	GRGCYC	2 cut(s)	625, 737
ErhI	CCWWGG	5 cut(s)	18, 270, 285, 318, 705
FaqI	GGGAC	3 cut(s)	371, 669, 690
FblI	GTMKAC	1 cut(s)	761
Fnu4HI	GCNGC	3 cut(s)	98, 609, 639
FriOI	GRGCYC	2 cut(s)	625, 737
Fsp4HI	GCNGC	3 cut(s)	98, 609, 639
FspBI	CTAG	2 cut(s)	57, 416
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	3 cut(s)	98, 609, 639
GsuI	CTGGAG	1 cut(s)	254
HaeII	RGCGCY	1 cut(s)	386
HaeIII	GGCC	7 cut(s)	5, 61, 179, 218, 331, 695, 710
HapII	CCGG	1 cut(s)	197
HhaI	GCGC	1 cut(s)	385
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HpaII	CCGG	1 cut(s)	197
Hpy166II	GTNNAC	2 cut(s)	244, 762
Hpy188I	TCNGA	1 cut(s)	792
Hpy8I	GTNNAC	2 cut(s)	244, 762
HpyAV	CCTTC	3 cut(s)	342, 524, 667
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4V	TGCA	7 cut(s)	11, 186, 249, 451, 486, 641, 748
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	1 cut(s)	101
HspAI	GCGC	1 cut(s)	383
Kzo9I	GATC	2 cut(s)	90, 792
LmnI	GCTCC	3 cut(s)	302, 533, 768
Lsp1109I	GCAGC	3 cut(s)	84, 620, 625
MaeI	CTAG	2 cut(s)	57, 416
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	2 cut(s)	92, 794
MboI	GATC	2 cut(s)	90, 792
MboII	GAAGA	5 cut(s)	163, 369, 397, 679, 682
MfeI	CAATTG	1 cut(s)	755
MhlI	GDGCHC	3 cut(s)	403, 625, 737
MlsI	TGGCCA	2 cut(s)	5, 710
MluCI	AATT	4 cut(s)	24, 306, 565, 755
MluNI	TGGCCA	2 cut(s)	5, 710
MnlI	CCTC	2 cut(s)	254, 347
Mox20I	TGGCCA	2 cut(s)	5, 710
MscI	TGGCCA	2 cut(s)	5, 710
MseI	TTAA	1 cut(s)	699
MslI	CAYNNNNRTG	1 cut(s)	34
Msp20I	TGGCCA	2 cut(s)	5, 710
MspA1I	CMGCKG	1 cut(s)	611
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	220
MunI	CAATTG	1 cut(s)	755
MvaI	CCWGG	1 cut(s)	220
MwoI	GCNNNNNNNGC	1 cut(s)	542
NcoI	CCATGG	1 cut(s)	318
NdeII	GATC	2 cut(s)	90, 792
NlaIV	GGNNCC	4 cut(s)	283, 330, 359, 678
NmeAIII	GCCGAG	1 cut(s)	671
NspI	RCATGY	2 cut(s)	109, 193
PceI	AGGCCT	1 cut(s)	61
PkrI	GCNGC	3 cut(s)	99, 610, 640
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	4 cut(s)	283, 330, 359, 678
PspPI	GGNCC	6 cut(s)	124, 329, 358, 432, 579, 677
PsrI	GAACNNNNNNTAC	2 cut(s)	274, 306
PstI	CTGCAG	1 cut(s)	251
PvuII	CAGCTG	1 cut(s)	611
RsaI	GTAC	1 cut(s)	468
RsaNI	GTAC	1 cut(s)	467
RseI	CAYNNNNRTG	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	699
SatI	GCNGC	3 cut(s)	98, 609, 639
Sau3AI	GATC	2 cut(s)	90, 792
Sau96I	GGNCC	6 cut(s)	124, 329, 358, 432, 579, 677
ScrFI	CCNGG	1 cut(s)	220
SduI	GDGCHC	3 cut(s)	403, 625, 737
SetI	ASST	5 cut(s)	81, 276, 287, 492, 613
SfcI	CTRYAG	1 cut(s)	247
SinI	GGWCC	5 cut(s)	124, 358, 432, 579, 677
SmiMI	CAYNNNNRTG	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
Sse9I	AATT	4 cut(s)	24, 306, 565, 755
SseBI	AGGCCT	1 cut(s)	61
SspMI	CTAG	2 cut(s)	57, 416
StuI	AGGCCT	1 cut(s)	61
StyD4I	CCNGG	1 cut(s)	218
StyI	CCWWGG	5 cut(s)	18, 270, 285, 318, 705
TaaI	ACNGT	1 cut(s)	295
TasI	AATT	4 cut(s)	24, 306, 565, 755
TatI	WGTACW	1 cut(s)	466
Tru1I	TTAA	1 cut(s)	699
Tru9I	TTAA	1 cut(s)	699
TscAI	CASTG	1 cut(s)	543
TseI	GCWGC	3 cut(s)	97, 608, 638
TspDTI	ATGAA	4 cut(s)	164, 202, 430, 765
TspRI	CASTG	1 cut(s)	543
VpaK11BI	GGWCC	5 cut(s)	124, 358, 432, 579, 677
XapI	RAATTY	1 cut(s)	565
XceI	RCATGY	2 cut(s)	109, 193
XcmI	CCANNNNNNNNNTGG	2 cut(s)	79, 718
XmiI	GTMKAC	1 cut(s)	761
XspI	CTAG	2 cut(s)	57, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.