Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Forward (+)

13351397 .. 13351753

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG156100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGGGCTGGTTGTGACGAAGAAGGGACCAGTTTTCTACTCTGCCTTTAACCCCTTGGGCACCCTCCTTGTGGCGATTTTGGGATCATTTTTTCTGGCAGAACAATTGTATACTGGAATTCTCATCGGAGCTGTAACCATTGTGGGAGGCCTCTATCTTGTTCTTTGGGGAAAAGCAAGAGATCAGCCTCCCTCTTTGAATGCCAATGTGGAAGAACCAACTGGAACCCCAGCAATAGACGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

81

Amino Acids

8.52

Weight (kDa)

4.71

Isoelectric Point (pI)

28.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	110
AclWI	GGATC	1 cut(s)	91
AcsI	RAATTY	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	70
AgsI	TTSAA	1 cut(s)	199
AluBI	AGCT	1 cut(s)	131
AluI	AGCT	1 cut(s)	131
AlwI	GGATC	1 cut(s)	91
AoxI	GGCC	1 cut(s)	148
ApoI	RAATTY	1 cut(s)	117
AspS9I	GGNCC	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	26
BaeGI	GKGCMC	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	3 cut(s)	27, 61, 226
BsaJI	CCNNGG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse1I	ACTGG	3 cut(s)	29, 118, 226
BseDI	CCNNGG	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseNI	ACTGG	3 cut(s)	29, 118, 226
BseSI	GKGCMC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	229
BshFI	GGCC	1 cut(s)	150
BshNI	GGYRCC	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	39
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp143I	GATC	2 cut(s)	83, 181
BspANI	GGCC	1 cut(s)	150
BspLI	GGNNCC	3 cut(s)	27, 61, 226
BspPI	GGATC	1 cut(s)	91
BspT107I	GGYRCC	1 cut(s)	59
BsrI	ACTGG	3 cut(s)	29, 118, 226
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	2 cut(s)	83, 181
BssNAI	GTATAC	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	54
Bst1107I	GTATAC	1 cut(s)	111
BstKTI	GATC	2 cut(s)	86, 184
BstMBI	GATC	2 cut(s)	83, 181
BstSLI	GKGCMC	1 cut(s)	62
BstZ17I	GTATAC	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	26
CviJI	RGCY	4 cut(s)	7, 131, 150, 187
CviKI_1	RGCY	4 cut(s)	7, 131, 150, 187
DpnI	GATC	2 cut(s)	85, 183
DpnII	GATC	2 cut(s)	83, 181
Eco130I	CCWWGG	1 cut(s)	54
Eco147I	AGGCCT	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	26
EcoRI	GAATTC	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaiI	YATR	1 cut(s)	111
FaqI	GGGAC	1 cut(s)	39
FblI	GTMKAC	1 cut(s)	110
GsaI	CCCAGC	1 cut(s)	233
HaeIII	GGCC	1 cut(s)	150
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	1 cut(s)	128
Hpy8I	GTNNAC	1 cut(s)	111
HpyAV	CCTTC	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	83, 181
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	4 cut(s)	42, 80, 99, 207
MaeIII	GTNAC	2 cut(s)	13, 133
MalI	GATC	2 cut(s)	85, 183
MboI	GATC	2 cut(s)	83, 181
MboII	GAAGA	2 cut(s)	31, 224
MfeI	CAATTG	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	62
MluCI	AATT	2 cut(s)	104, 117
MnlI	CCTC	5 cut(s)	74, 140, 161, 198, 202
MseI	TTAA	2 cut(s)	48, 244
MunI	CAATTG	1 cut(s)	104
Mva1269I	GAATGC	1 cut(s)	205
NdeII	GATC	2 cut(s)	83, 181
NlaIV	GGNNCC	3 cut(s)	27, 61, 226
NmuCI	GTSAC	1 cut(s)	13
PceI	AGGCCT	1 cut(s)	150
PctI	GAATGC	1 cut(s)	205
PspFI	CCCAGC	1 cut(s)	229
PspN4I	GGNNCC	3 cut(s)	27, 61, 226
PspPI	GGNCC	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	48, 244
Sau3AI	GATC	2 cut(s)	83, 181
Sau96I	GGNCC	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	62
SetI	ASST	1 cut(s)	133
SinI	GGWCC	1 cut(s)	26
Sse9I	AATT	2 cut(s)	104, 117
SseBI	AGGCCT	1 cut(s)	150
StuI	AGGCCT	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	54
TasI	AATT	2 cut(s)	104, 117
Tru1I	TTAA	2 cut(s)	48, 244
Tru9I	TTAA	2 cut(s)	48, 244
TseFI	GTSAC	1 cut(s)	13
Tsp45I	GTSAC	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	26
XapI	RAATTY	1 cut(s)	117
XmiI	GTMKAC	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.