Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Reverse (-)

43183825 .. 43185811

Gene Structure 1987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG296400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCCATTGCAACTACCTTGGCAATTCCATTGGCATGGTATATAGAGAGACATTCTAGGCCTACAATGACCATCAAGGTCATGGCAAAGATCATGCTGCTAAGCATGTTTGACCCTGTAATGGACCAAAACTTATACTATGTGGGAATTAAATTTAACATGAAGAACTCCAATGCCACATTCACATCGGCCATGTGCAACATGCTTCCGGTGTTTGCATTTGTCATGGCCTGGATTTTCAGGCTGGAGAATGTGGACTACAGACACCCGAGAGGATTGACCAAGGTTGTAGGAACCTTAGTTACTGTGGTAGGAGCAATCCTCCTTACCATGGTCAAGGGGCCTTCCCTCAACTTGCCATGGGCAAGGGACCACGACAAAAATCATTCTTCAGTGCCCAAAGTCAAGGGTGCTCTCTTCCTAACACTAGCCTGCTTCTGCTGGTCCTGTTTCATAATCCTACAAGCCAATGTACTCAAGTCCTACCCCTGCAAGCTCTCTCTCACCGCTTTGATTTGCTTCTGGGGTATGGTGGAAGGAGCAGTGGTGGCTGTTGTGGTTGAAAGGGGGAATTTGGAAGCATGGCCCATACACTTGGACTTGAAGTTGCTCGCAGCTGTTTATGGGGCTCTTGTATCGGGGGCTGCATATTATGTCATGGGACTGGTTGTGAAGAAGAAGGGACCAGTTTTCTACTCGGCCTTGCACCCCTTGGCCACTCTACTTGTGGCGATTTTGGGGTCATTTTTTCTGCATGAACAATTGTATACTGGGAGTCTCATCGGAGCTGTAACCATTGTGGGAGGCCTCTATCTTGTTCTTTGGGGAAAAGCAAGAGACCAGCCTCCCTCCGATTCAAAGAATGCCAATGTGGAAGAACCAACTGGAACCCCAGCAATAGACGATCGTGAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

305

Amino Acids

33.53

Weight (kDa)

9.05

Isoelectric Point (pI)

22.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	136 - 274	2.4e-09	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	767
AciI	CCGC	1 cut(s)	507
AcoI	YGGCCR	3 cut(s)	3, 189, 714
AcsI	RAATTY	2 cut(s)	152, 571
AcuI	CTGAAG	1 cut(s)	375
AfaI	GTAC	1 cut(s)	474
AfiI	CCNNNNNNNGG	2 cut(s)	121, 331
AgsI	TTSAA	3 cut(s)	563, 604, 858
AjnI	CCWGG	1 cut(s)	230
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	3 cut(s)	496, 617, 788
AluI	AGCT	3 cut(s)	496, 617, 788
Alw21I	GWGCWC	1 cut(s)	415
Alw26I	GTCTC	3 cut(s)	43, 782, 831
Ama87I	CYCGRG	1 cut(s)	268
AoxI	GGCC	9 cut(s)	3, 59, 189, 228, 341, 584, 699, 714, 805
ApeKI	GCWGC	3 cut(s)	97, 614, 644
ApoI	RAATTY	2 cut(s)	152, 571
AspS9I	GGNCC	6 cut(s)	124, 341, 370, 444, 585, 683
AsuHPI	GGTGA	1 cut(s)	496
AvaI	CYCGRG	1 cut(s)	268
AvaII	GGWCC	4 cut(s)	124, 370, 444, 683
BaeGI	GKGCMC	1 cut(s)	399
BalI	TGGCCA	2 cut(s)	5, 716
BanII	GRGCYC	1 cut(s)	631
Bbv12I	GWGCWC	1 cut(s)	415
BbvI	GCAGC	3 cut(s)	84, 626, 631
BccI	CCATC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	232
BcoDI	GTCTC	3 cut(s)	43, 782, 831
BfaI	CTAG	2 cut(s)	57, 428
BfmI	CTRYAG	1 cut(s)	259
BisI	GCNGC	3 cut(s)	98, 615, 645
BlpI	GCTNAGC	1 cut(s)	101
BlsI	GCNGC	3 cut(s)	99, 616, 646
Bme1390I	CCNGG	1 cut(s)	232
Bme18I	GGWCC	4 cut(s)	124, 370, 444, 683
BmeT110I	CYCGRG	1 cut(s)	268
BmgT120I	GGNCC	6 cut(s)	124, 341, 370, 444, 585, 683
BmiI	GGNNCC	5 cut(s)	295, 342, 371, 684, 889
BmrFI	CCNGG	1 cut(s)	232
BmrI	ACTGGG	1 cut(s)	780
BmuI	ACTGGG	1 cut(s)	780
BplI	GAGNNNNNCTC	2 cut(s)	306, 338
BpmI	CTGGAG	1 cut(s)	266
Bpu1102I	GCTNAGC	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	461
BsaI	GGTCTC	1 cut(s)	831
BsaJI	CCNNGG	5 cut(s)	18, 282, 330, 359, 711
BsaWI	WCCGGW	1 cut(s)	208
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 331
Bse1I	ACTGG	4 cut(s)	669, 686, 775, 889
Bse3DI	GCAATG	1 cut(s)	6
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	5 cut(s)	18, 282, 330, 359, 711
BseLI	CCNNNNNNNGG	2 cut(s)	121, 331
BseMI	GCAATG	1 cut(s)	6
BseNI	ACTGG	4 cut(s)	669, 686, 775, 889
BseSI	GKGCMC	1 cut(s)	399
BseXI	GCAGC	3 cut(s)	84, 626, 631
BseYI	CCCAGC	1 cut(s)	892
Bsh1285I	CGRYCG	1 cut(s)	907
BshFI	GGCC	9 cut(s)	5, 61, 191, 230, 343, 586, 701, 716, 807
BsiEI	CGRYCG	1 cut(s)	907
BsiHKAI	GWGCWC	1 cut(s)	415
BsiHKCI	CYCGRG	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	3 cut(s)	383, 675, 696
BslI	CCNNNNNNNGG	2 cut(s)	121, 331
BsmAI	GTCTC	3 cut(s)	43, 782, 831
BsmFI	GGGAC	3 cut(s)	383, 675, 696
BsmI	GAATGC	1 cut(s)	868
BsnI	GGCC	9 cut(s)	5, 61, 191, 230, 343, 586, 701, 716, 807
Bso31I	GGTCTC	1 cut(s)	831
BsoBI	CYCGRG	1 cut(s)	268
Bsp1286I	GDGCHC	3 cut(s)	399, 415, 631
Bsp143I	GATC	2 cut(s)	90, 904
Bsp1720I	GCTNAGC	1 cut(s)	101
Bsp19I	CCATGG	2 cut(s)	330, 359
BspACI	CCGC	1 cut(s)	507
BspANI	GGCC	9 cut(s)	5, 61, 191, 230, 343, 586, 701, 716, 807
BspLI	GGNNCC	5 cut(s)	295, 342, 371, 684, 889
BspTNI	GGTCTC	1 cut(s)	831
BsrDI	GCAATG	1 cut(s)	6
BsrI	ACTGG	4 cut(s)	669, 686, 775, 889
BssECI	CCNNGG	5 cut(s)	18, 282, 330, 359, 711
BssMI	GATC	2 cut(s)	90, 904
BssNAI	GTATAC	1 cut(s)	768
BssT1I	CCWWGG	5 cut(s)	18, 282, 330, 359, 711
Bst1107I	GTATAC	1 cut(s)	768
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	1 cut(s)	422
BstC8I	GCNNGC	3 cut(s)	433, 494, 612
BstDEI	CTNAG	2 cut(s)	101, 298
BstDSI	CCRYGG	2 cut(s)	330, 359
BstKTI	GATC	2 cut(s)	93, 907
BstMAI	GTCTC	3 cut(s)	43, 782, 831
BstMBI	GATC	2 cut(s)	90, 904
BstMCI	CGRYCG	1 cut(s)	907
BstMWI	GCNNNNNNNGC	1 cut(s)	548
BstNI	CCWGG	1 cut(s)	232
BstNSI	RCATGY	2 cut(s)	109, 205
BstSCI	CCNGG	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	259
BstSLI	GKGCMC	1 cut(s)	399
BstV1I	GCAGC	3 cut(s)	84, 626, 631
BstXI	CCANNNNNNTGG	2 cut(s)	36, 595
BstZ17I	GTATAC	1 cut(s)	768
BsuRI	GGCC	9 cut(s)	5, 61, 191, 230, 343, 586, 701, 716, 807
BtgI	CCRYGG	2 cut(s)	330, 359
BtsI	GCAGTG	1 cut(s)	549
BtsIMutI	CAGTG	2 cut(s)	399, 549
Cac8I	GCNNGC	3 cut(s)	433, 494, 612
Cfr13I	GGNCC	6 cut(s)	124, 341, 370, 444, 585, 683
Csp6I	GTAC	1 cut(s)	473
CspCI	CAANNNNNGTGG	2 cut(s)	706, 741
CviQI	GTAC	1 cut(s)	473
DdeI	CTNAG	2 cut(s)	101, 298
DpnI	GATC	2 cut(s)	92, 906
DpnII	GATC	2 cut(s)	90, 904
EaeI	YGGCCR	3 cut(s)	3, 189, 714
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
Eco130I	CCWWGG	5 cut(s)	18, 282, 330, 359, 711
Eco147I	AGGCCT	2 cut(s)	61, 807
Eco24I	GRGCYC	1 cut(s)	631
Eco31I	GGTCTC	1 cut(s)	831
Eco47I	GGWCC	4 cut(s)	124, 370, 444, 683
Eco57I	CTGAAG	1 cut(s)	375
Eco88I	CYCGRG	1 cut(s)	268
EcoO109I	RGGNCCY	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	230
EcoT14I	CCWWGG	5 cut(s)	18, 282, 330, 359, 711
EcoT38I	GRGCYC	1 cut(s)	631
ErhI	CCWWGG	5 cut(s)	18, 282, 330, 359, 711
FaqI	GGGAC	3 cut(s)	383, 675, 696
FblI	GTMKAC	1 cut(s)	767
Fnu4HI	GCNGC	3 cut(s)	98, 615, 645
FriOI	GRGCYC	1 cut(s)	631
Fsp4HI	GCNGC	3 cut(s)	98, 615, 645
FspBI	CTAG	2 cut(s)	57, 428
GluI	GCNGC	3 cut(s)	98, 615, 645
GsaI	CCCAGC	1 cut(s)	896
GsuI	CTGGAG	1 cut(s)	266
HaeIII	GGCC	9 cut(s)	5, 61, 191, 230, 343, 586, 701, 716, 807
HapII	CCGG	1 cut(s)	209
HinfI	GANTC	2 cut(s)	775, 854
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	1 cut(s)	496
Hpy166II	GTNNAC	2 cut(s)	256, 768
Hpy188I	TCNGA	2 cut(s)	785, 853
Hpy188III	TCNNGA	1 cut(s)	908
Hpy8I	GTNNAC	2 cut(s)	256, 768
HpyAV	CCTTC	3 cut(s)	354, 530, 673
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4V	TGCA	7 cut(s)	11, 198, 218, 492, 647, 706, 754
HpyF10VI	GCNNNNNNNGC	1 cut(s)	548
HpyF3I	CTNAG	2 cut(s)	101, 298
Kzo9I	GATC	2 cut(s)	90, 904
LmnI	GCTCC	3 cut(s)	314, 539, 785
Lsp1109I	GCAGC	3 cut(s)	84, 626, 631
MaeI	CTAG	2 cut(s)	57, 428
MaeIII	GTNAC	2 cut(s)	301, 790
MalI	GATC	2 cut(s)	92, 906
MboI	GATC	2 cut(s)	90, 904
MboII	GAAGA	6 cut(s)	175, 381, 409, 685, 688, 887
MfeI	CAATTG	1 cut(s)	761
MhlI	GDGCHC	3 cut(s)	399, 415, 631
MlsI	TGGCCA	2 cut(s)	5, 716
MluCI	AATT	5 cut(s)	24, 147, 152, 571, 761
MluNI	TGGCCA	2 cut(s)	5, 716
MlyI	GAGTC	1 cut(s)	784
MnlI	CCTC	7 cut(s)	266, 332, 359, 797, 818, 855, 859
Mox20I	TGGCCA	2 cut(s)	5, 716
MscI	TGGCCA	2 cut(s)	5, 716
MseI	TTAA	3 cut(s)	150, 156, 916
MslI	CAYNNNNRTG	1 cut(s)	34
Msp20I	TGGCCA	2 cut(s)	5, 716
MspA1I	CMGCKG	1 cut(s)	617
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	232
MunI	CAATTG	1 cut(s)	761
Mva1269I	GAATGC	1 cut(s)	868
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	1 cut(s)	548
NcoI	CCATGG	2 cut(s)	330, 359
NdeII	GATC	2 cut(s)	90, 904
NlaIV	GGNNCC	5 cut(s)	295, 342, 371, 684, 889
NmeAIII	GCCGAG	1 cut(s)	677
NspI	RCATGY	2 cut(s)	109, 205
PceI	AGGCCT	2 cut(s)	61, 807
PctI	GAATGC	1 cut(s)	868
PfeI	GAWTC	1 cut(s)	854
PkrI	GCNGC	3 cut(s)	99, 616, 646
Ple19I	CGATCG	1 cut(s)	907
PleI	GAGTC	1 cut(s)	783
PpsI	GAGTC	1 cut(s)	783
Psp6I	CCWGG	1 cut(s)	230
PspFI	CCCAGC	1 cut(s)	892
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	5 cut(s)	295, 342, 371, 684, 889
PspPI	GGNCC	6 cut(s)	124, 341, 370, 444, 585, 683
PsrI	GAACNNNNNNTAC	2 cut(s)	286, 318
PvuI	CGATCG	1 cut(s)	907
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	1 cut(s)	474
RsaNI	GTAC	1 cut(s)	473
RseI	CAYNNNNRTG	1 cut(s)	34
SaqAI	TTAA	3 cut(s)	150, 156, 916
SatI	GCNGC	3 cut(s)	98, 615, 645
Sau3AI	GATC	2 cut(s)	90, 904
Sau96I	GGNCC	6 cut(s)	124, 341, 370, 444, 585, 683
SchI	GAGTC	1 cut(s)	784
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	3 cut(s)	399, 415, 631
SetI	ASST	7 cut(s)	20, 81, 288, 299, 498, 619, 790
SfcI	CTRYAG	1 cut(s)	259
SinI	GGWCC	4 cut(s)	124, 370, 444, 683
SmiMI	CAYNNNNRTG	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	5 cut(s)	24, 147, 152, 571, 761
SseBI	AGGCCT	2 cut(s)	61, 807
SsiI	CCGC	1 cut(s)	507
SspMI	CTAG	2 cut(s)	57, 428
StuI	AGGCCT	2 cut(s)	61, 807
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	5 cut(s)	18, 282, 330, 359, 711
TaaI	ACNGT	1 cut(s)	307
TasI	AATT	5 cut(s)	24, 147, 152, 571, 761
TatI	WGTACW	1 cut(s)	472
TfiI	GAWTC	1 cut(s)	854
Tru1I	TTAA	3 cut(s)	150, 156, 916
Tru9I	TTAA	3 cut(s)	150, 156, 916
TscAI	CASTG	2 cut(s)	399, 549
TseI	GCWGC	3 cut(s)	97, 614, 644
TspDTI	ATGAA	3 cut(s)	176, 442, 771
TspRI	CASTG	2 cut(s)	399, 549
VpaK11BI	GGWCC	4 cut(s)	124, 370, 444, 683
XapI	RAATTY	2 cut(s)	152, 571
XceI	RCATGY	2 cut(s)	109, 205
XcmI	CCANNNNNNNNNTGG	2 cut(s)	79, 724
XmiI	GTMKAC	1 cut(s)	767
XspI	CTAG	2 cut(s)	57, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.