FvH4_7g21440

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000617
Physical Location & Seq
Reverse (-)
17176408 .. 17177974
1567 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g21440.t1

Sequence Viewer

Length: 504 bp
ATGGAAACAACGATTAGGAATCATCGAAAAAAGAAGAGAGTCGCGACTACGGTAGCTCAAAAGGACTGGTCGAGCCTTCATCAAGATTTTATTAGCTGTTTCGCACAGCAAATAGTTTCCATGAAAGATTTCTTTGCTTTTGGAGGAGTTTGCAAATCGTGGAGATCAGAAGAGATCAAGGAAAGTCTAATACAGAATCAAAGCGTGGTCACCCATTGTATATGGATGCCAATGAACCAGATGCAGAGTTCCAGGGCAGTTCACTGCCAGTTTTTTGGAGAAGAGCCTGAAAGGACAGTCAACTTAGTAGATAGAAACATTCAGTCTGTCAGAAGTGGAACTATGAATTTGTTCATGCATTGCAGCCCTGTGCTTGACCAGAACCTCTACTACATGGGAATGAAGCACTCGAGTGCAACGTTCACTTCTGCAATGTGTAATATGCTGCCTGCTTTTGCATTTTGTCTTGCCTGGATATTTAGATTCGAGAAGGTTAGCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

168

Amino Acids

19.37

Weight (kDa)

8.92

Isoelectric Point (pI)

59.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000617)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39510
fragaria_vesca FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 44
AclI AACGTT 1 cut(s) 419
AcsI RAATTY 1 cut(s) 346
AjnI CCWGG 2 cut(s) 251, 470
AleI CACNNNNGTG 1 cut(s) 411
AluBI AGCT 2 cut(s) 56, 96
AluI AGCT 2 cut(s) 56, 96
Ama87I CYCGRG 1 cut(s) 409
ApeKI GCWGC 2 cut(s) 363, 445
ApoI RAATTY 1 cut(s) 346
Asp700I GAANNNNTTC 2 cut(s) 128, 350
AsuHPI GGTGA 1 cut(s) 202
AvaI CYCGRG 1 cut(s) 409
BbvI GCAGC 2 cut(s) 375, 432
BciT130I CCWGG 2 cut(s) 253, 472
BisI GCNGC 2 cut(s) 364, 446
BlsI GCNGC 2 cut(s) 365, 447
Bme1390I CCNGG 2 cut(s) 253, 472
BmeT110I CYCGRG 1 cut(s) 409
BmrFI CCNGG 2 cut(s) 253, 472
BmsI GCATC 2 cut(s) 216, 231
BsaJI CCNNGG 1 cut(s) 252
Bse1I ACTGG 2 cut(s) 71, 268
Bse3DI GCAATG 2 cut(s) 358, 438
BseBI CCWGG 2 cut(s) 253, 472
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 231
BseMI GCAATG 2 cut(s) 358, 438
BseNI ACTGG 2 cut(s) 71, 268
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 2 cut(s) 375, 432
Bsh1236I CGCG 1 cut(s) 44
BsiHKCI CYCGRG 1 cut(s) 409
BsoBI CYCGRG 1 cut(s) 409
Bsp143I GATC 2 cut(s) 164, 174
Bsp68I TCGCGA 1 cut(s) 44
BspFNI CGCG 1 cut(s) 44
BspQI GCTCTTC 1 cut(s) 276
BsrDI GCAATG 2 cut(s) 358, 438
BsrI ACTGG 2 cut(s) 71, 268
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 2 cut(s) 164, 174
Bst2UI CCWGG 2 cut(s) 253, 472
Bst4CI ACNGT 2 cut(s) 52, 298
Bst6I CTCTTC 3 cut(s) 29, 165, 276
BstC8I GCNNGC 1 cut(s) 450
BstDEI CTNAG 1 cut(s) 304
BstEII GGTNACC 1 cut(s) 208
BstF5I GGATG 1 cut(s) 231
BstFNI CGCG 1 cut(s) 44
BstKTI GATC 2 cut(s) 167, 177
BstMBI GATC 2 cut(s) 164, 174
BstNI CCWGG 2 cut(s) 253, 472
BstPI GGTNACC 1 cut(s) 208
BstSCI CCNGG 2 cut(s) 251, 470
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 2 cut(s) 375, 432
BstXI CCANNNNNNTGG 1 cut(s) 275
BtsCI GGATG 1 cut(s) 231
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 262
BtuMI TCGCGA 1 cut(s) 44
Cac8I GCNNGC 1 cut(s) 450
CviAII CATG 3 cut(s) 121, 355, 394
CviJI RGCY 6 cut(s) 56, 75, 96, 286, 366, 498
CviKI_1 RGCY 6 cut(s) 56, 75, 96, 286, 366, 498
DdeI CTNAG 1 cut(s) 304
DpnI GATC 2 cut(s) 166, 176
DpnII GATC 2 cut(s) 164, 174
Eam1104I CTCTTC 3 cut(s) 29, 165, 276
EarI CTCTTC 3 cut(s) 29, 165, 276
Eco88I CYCGRG 1 cut(s) 409
Eco91I GGTNACC 1 cut(s) 208
EcoO65I GGTNACC 1 cut(s) 208
EcoRII CCWGG 2 cut(s) 251, 470
EcoT22I ATGCAT 1 cut(s) 360
FaeI CATG 3 cut(s) 124, 358, 397
FaiI YATR 7 cut(s) 122, 221, 223, 344, 356, 395, 443
FatI CATG 3 cut(s) 120, 354, 393
Fnu4HI GCNGC 2 cut(s) 364, 446
FokI GGATG 1 cut(s) 238
Fsp4HI GCNGC 2 cut(s) 364, 446
GluI GCNGC 2 cut(s) 364, 446
Hin1II CATG 3 cut(s) 124, 358, 397
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HinfI GANTC 4 cut(s) 19, 39, 196, 483
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 3 cut(s) 262, 301, 423
Hpy188I TCNGA 2 cut(s) 169, 332
Hpy188III TCNNGA 3 cut(s) 43, 83, 487
Hpy8I GTNNAC 3 cut(s) 262, 301, 423
HpyAV CCTTC 2 cut(s) 86, 484
HpyCH4III ACNGT 2 cut(s) 52, 298
HpyCH4IV ACGT 1 cut(s) 419
HpyCH4V TGCA 7 cut(s) 153, 244, 358, 363, 416, 431, 458
HpyF3I CTNAG 1 cut(s) 304
HpySE526I ACGT 1 cut(s) 419
Hsp92II CATG 3 cut(s) 124, 358, 397
Kzo9I GATC 2 cut(s) 164, 174
LguI GCTCTTC 1 cut(s) 276
Lsp1109I GCAGC 2 cut(s) 375, 432
LweI GCATC 2 cut(s) 216, 231
MaeII ACGT 1 cut(s) 419
MaeIII GTNAC 1 cut(s) 208
MalI GATC 2 cut(s) 166, 176
MboI GATC 2 cut(s) 164, 174
MboII GAAGA 3 cut(s) 46, 182, 293
MluCI AATT 1 cut(s) 346
MlyI GAGTC 1 cut(s) 48
MnlI CCTC 2 cut(s) 137, 395
Mph1103I ATGCAT 1 cut(s) 360
MroXI GAANNNNTTC 2 cut(s) 128, 350
MseI TTAA 1 cut(s) 502
MslI CAYNNNNRTG 2 cut(s) 398, 411
MspR9I CCNGG 2 cut(s) 253, 472
MvaI CCWGG 2 cut(s) 253, 472
MvnI CGCG 1 cut(s) 44
NdeII GATC 2 cut(s) 164, 174
NlaIII CATG 3 cut(s) 124, 358, 397
NmuCI GTSAC 1 cut(s) 208
NruI TCGCGA 1 cut(s) 44
NsiI ATGCAT 1 cut(s) 360
OliI CACNNNNGTG 1 cut(s) 411
PaeR7I CTCGAG 1 cut(s) 409
PciSI GCTCTTC 1 cut(s) 276
PcsI WCGNNNNNNNCGW 1 cut(s) 416
PdmI GAANNNNTTC 2 cut(s) 128, 350
PfeI GAWTC 3 cut(s) 19, 196, 483
PkrI GCNGC 2 cut(s) 365, 447
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
Psp1406I AACGTT 1 cut(s) 419
Psp6I CCWGG 2 cut(s) 251, 470
PspEI GGTNACC 1 cut(s) 208
PspGI CCWGG 2 cut(s) 251, 470
PspXI VCTCGAGB 1 cut(s) 409
PsrI GAACNNNNNNTAC 2 cut(s) 374, 406
RruI TCGCGA 1 cut(s) 44
RseI CAYNNNNRTG 2 cut(s) 398, 411
SapI GCTCTTC 1 cut(s) 276
SaqAI TTAA 1 cut(s) 502
SatI GCNGC 2 cut(s) 364, 446
Sau3AI GATC 2 cut(s) 164, 174
SchI GAGTC 1 cut(s) 48
ScrFI CCNGG 2 cut(s) 253, 472
SetI ASST 5 cut(s) 58, 98, 387, 422, 495
SfaNI GCATC 2 cut(s) 216, 231
Sfr274I CTCGAG 1 cut(s) 409
SlaI CTCGAG 1 cut(s) 409
SmiMI CAYNNNNRTG 2 cut(s) 398, 411
SmlI CTYRAG 1 cut(s) 409
SmoI CTYRAG 1 cut(s) 409
Sse9I AATT 1 cut(s) 346
StyD4I CCNGG 2 cut(s) 251, 470
TaaI ACNGT 2 cut(s) 52, 298
TaiI ACGT 1 cut(s) 422
TaqI TCGA 4 cut(s) 25, 71, 410, 486
TasI AATT 1 cut(s) 346
TfiI GAWTC 3 cut(s) 19, 196, 483
Tru1I TTAA 1 cut(s) 502
Tru9I TTAA 1 cut(s) 502
TscAI CASTG 1 cut(s) 269
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 2 cut(s) 363, 445
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 6 cut(s) 68, 137, 248, 343, 359, 416
TspRI CASTG 1 cut(s) 269
XapI RAATTY 1 cut(s) 346
XhoI CTCGAG 1 cut(s) 409
XmnI GAANNNNTTC 2 cut(s) 128, 350
Zsp2I ATGCAT 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.