Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Reverse (-)

38632426 .. 38633914

Gene Structure 1489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00314630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGAGTTCCATGACTACAATTCTTGTCATTGCAGTGTGTTTTGTTCAAGCCTTGTATGCAGGCCTCTCAATCATCTCAATCCTTGCACTAAGGCAGGGCATGAGCCACTACACCTTTGTGGTGTATCGTATGGCCATTGCAACTGCCTTGGCAAGTCCATTGGCAGGGTACCTAGAGAGACATTCTAGGCCTACAATGACCATCAAGGTCATGGCAAAGATCATGTTGCTAAGCATGTTTGACCCTGTAATGGACCAAAACTTATACTATGTGGGCATGAAGAACTCCAATGCCACATTCACATCGGCCATGTGCAACATGCTTCCGGTGTTTGCATTTGTCATGGCCTGGATTTTCAGGCTGGAGAATGTGGACTGCAGACACCCGAGAGGATTGGCCAAGGTTGTAGGAACCTTGGTTACTGTGGTAGGAGCAATCCTCCTTACCATGGTCAAGGGGCCTTCCCTCAACTTGCCATGGGCAAGGGACCACGAAAAAAATCATTCTTCACAGCCCGAAGTCAAGGGTGCTTTCTTCCTAACACTAGCCTGTTTCTGCTGGTCCTGTTTCATGATCCTACAAGCCAATGTACTCAAGTCCTACCCCTGCAAGCTCTCTCTCACCGCTTTGATTTGCTTCTGGGGTATGGTGGAAGGAGCAGTGGTGGCTGTTGTGGTTGAAAGGGAGAACTCGGAAGCATGGTCCATACACTTGGACTACAAGTTGCTCGCAGCTGTATATGGGGCTCTTCTATCGGGGGCTGCATATTATGTCATGGGACTGGTTGTCAAGAAGAAGGGACCAGTTTTCTACTCGGCCTTTAACCCCTTGGCCACTCTGCTTGTGGCGATTTTGGGGTCATTTTTCCTGGCAGAACAGTTGTATACTGGGAGTCTCATTGGAGCTGTAACCATTGTGGGAGGCCTCTATCTTGTTCTTTGGGGAAAAGCAAGAGATCGGCCTCCATCCGATTCAAAGAAGGCCAATGTGGAAGAACCAACTGGAACCCCAGCGCAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

340

Amino Acids

37.18

Weight (kDa)

9.12

Isoelectric Point (pI)

31.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	10 - 149	7.1e-11	EamA-like transporter family
EamA	PF00892	175 - 313	4.1e-09	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	168
AccB1I	GGYRCC	1 cut(s)	168
AccI	GTMKAC	1 cut(s)	884
AciI	CCGC	1 cut(s)	624
AclWI	GGATC	1 cut(s)	568
AcoI	YGGCCR	4 cut(s)	132, 306, 396, 831
AfaI	GTAC	2 cut(s)	170, 591
AfiI	CCNNNNNNNGG	3 cut(s)	164, 250, 448
AgsI	TTSAA	3 cut(s)	47, 680, 975
AhdI	GACNNNNNGTC	1 cut(s)	785
AjnI	CCWGG	2 cut(s)	347, 867
AjuI	GAANNNNNNNTTGG	2 cut(s)	281, 313
AleI	CACNNNNGTG	1 cut(s)	116
AluBI	AGCT	3 cut(s)	613, 734, 905
AluI	AGCT	3 cut(s)	613, 734, 905
Alw26I	GTCTC	2 cut(s)	172, 899
AlwI	GGATC	1 cut(s)	568
Ama87I	CYCGRG	1 cut(s)	385
ApeKI	GCWGC	2 cut(s)	731, 761
Asp718I	GGTACC	1 cut(s)	168
AspLEI	GCGC	1 cut(s)	1015
AspS9I	GGNCC	6 cut(s)	253, 458, 487, 561, 702, 800
AsuHPI	GGTGA	1 cut(s)	613
AvaI	CYCGRG	1 cut(s)	385
AvaII	GGWCC	5 cut(s)	253, 487, 561, 702, 800
BalI	TGGCCA	3 cut(s)	134, 398, 833
BanI	GGYRCC	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	748
BbvI	GCAGC	2 cut(s)	743, 748
BccI	CCATC	2 cut(s)	209, 973
BciT130I	CCWGG	2 cut(s)	349, 869
BcoDI	GTCTC	2 cut(s)	172, 899
BfaI	CTAG	3 cut(s)	173, 186, 545
BfmI	CTRYAG	1 cut(s)	376
BisI	GCNGC	2 cut(s)	732, 762
BlpI	GCTNAGC	1 cut(s)	230
BlsI	GCNGC	2 cut(s)	733, 763
Bme1390I	CCNGG	2 cut(s)	349, 869
Bme18I	GGWCC	5 cut(s)	253, 487, 561, 702, 800
BmeRI	GACNNNNNGTC	1 cut(s)	785
BmeT110I	CYCGRG	1 cut(s)	385
BmgT120I	GGNCC	6 cut(s)	253, 458, 487, 561, 702, 800
BmiI	GGNNCC	6 cut(s)	170, 412, 459, 488, 801, 1006
BmrFI	CCNGG	2 cut(s)	349, 869
BmrI	ACTGGG	1 cut(s)	897
BmuI	ACTGGG	1 cut(s)	897
BplI	GAGNNNNNCTC	2 cut(s)	423, 455
BpmI	CTGGAG	1 cut(s)	383
Bpu1102I	GCTNAGC	1 cut(s)	230
BpuEI	CTTGAG	1 cut(s)	578
BsaJI	CCNNGG	6 cut(s)	147, 399, 414, 447, 476, 828
BsaWI	WCCGGW	1 cut(s)	325
BsaXI	ACNNNNNCTCC	2 cut(s)	648, 678
Bsc4I	CCNNNNNNNGG	3 cut(s)	164, 250, 448
Bse1I	ACTGG	4 cut(s)	786, 803, 892, 1006
Bse3DI	GCAATG	2 cut(s)	27, 135
BseBI	CCWGG	2 cut(s)	349, 869
BseDI	CCNNGG	6 cut(s)	147, 399, 414, 447, 476, 828
BseGI	GGATG	1 cut(s)	965
BseLI	CCNNNNNNNGG	3 cut(s)	164, 250, 448
BseMI	GCAATG	2 cut(s)	27, 135
BseNI	ACTGG	4 cut(s)	786, 803, 892, 1006
BseXI	GCAGC	2 cut(s)	743, 748
BseYI	CCCAGC	1 cut(s)	1009
BshNI	GGYRCC	1 cut(s)	168
BsiHKCI	CYCGRG	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	326
BslFI	GGGAC	3 cut(s)	500, 792, 813
BslI	CCNNNNNNNGG	3 cut(s)	164, 250, 448
BsmAI	GTCTC	2 cut(s)	172, 899
BsmFI	GGGAC	3 cut(s)	500, 792, 813
BsoBI	CYCGRG	1 cut(s)	385
Bsp1286I	GDGCHC	1 cut(s)	748
Bsp143I	GATC	3 cut(s)	219, 573, 955
Bsp1720I	GCTNAGC	1 cut(s)	230
Bsp19I	CCATGG	2 cut(s)	447, 476
BspACI	CCGC	1 cut(s)	624
BspHI	TCATGA	1 cut(s)	570
BspLI	GGNNCC	6 cut(s)	170, 412, 459, 488, 801, 1006
BspMAI	CTGCAG	1 cut(s)	380
BspPI	GGATC	1 cut(s)	568
BspQI	GCTCTTC	1 cut(s)	753
BspT107I	GGYRCC	1 cut(s)	168
BsrDI	GCAATG	2 cut(s)	27, 135
BsrI	ACTGG	4 cut(s)	786, 803, 892, 1006
BssECI	CCNNGG	6 cut(s)	147, 399, 414, 447, 476, 828
BssMI	GATC	3 cut(s)	219, 573, 955
BssNAI	GTATAC	1 cut(s)	885
BssT1I	CCWWGG	6 cut(s)	147, 399, 414, 447, 476, 828
Bst1107I	GTATAC	1 cut(s)	885
Bst2UI	CCWGG	2 cut(s)	349, 869
Bst4CI	ACNGT	2 cut(s)	424, 879
Bst6I	CTCTTC	1 cut(s)	753
BstC8I	GCNNGC	3 cut(s)	61, 611, 729
BstDEI	CTNAG	2 cut(s)	89, 230
BstDSI	CCRYGG	2 cut(s)	447, 476
BstF5I	GGATG	1 cut(s)	965
BstHHI	GCGC	1 cut(s)	1015
BstKTI	GATC	3 cut(s)	222, 576, 958
BstMAI	GTCTC	2 cut(s)	172, 899
BstMBI	GATC	3 cut(s)	219, 573, 955
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 665
BstNI	CCWGG	2 cut(s)	349, 869
BstNSI	RCATGY	2 cut(s)	238, 322
BstSCI	CCNGG	2 cut(s)	347, 867
BstSFI	CTRYAG	1 cut(s)	376
BstV1I	GCAGC	2 cut(s)	743, 748
BstXI	CCANNNNNNTGG	1 cut(s)	712
BstZ17I	GTATAC	1 cut(s)	885
BtgI	CCRYGG	2 cut(s)	447, 476
BtsCI	GGATG	1 cut(s)	965
BtsI	GCAGTG	2 cut(s)	39, 666
BtsIMutI	CAGTG	2 cut(s)	39, 666
Cac8I	GCNNGC	3 cut(s)	61, 611, 729
CciI	TCATGA	1 cut(s)	570
CfoI	GCGC	1 cut(s)	1015
Cfr13I	GGNCC	6 cut(s)	253, 458, 487, 561, 702, 800
Csp6I	GTAC	2 cut(s)	169, 590
CspCI	CAANNNNNGTGG	2 cut(s)	823, 858
CviQI	GTAC	2 cut(s)	169, 590
DdeI	CTNAG	2 cut(s)	89, 230
DpnI	GATC	3 cut(s)	221, 575, 957
DpnII	GATC	3 cut(s)	219, 573, 955
DriI	GACNNNNNGTC	1 cut(s)	785
EaeI	YGGCCR	4 cut(s)	132, 306, 396, 831
Eam1104I	CTCTTC	1 cut(s)	753
Eam1105I	GACNNNNNGTC	1 cut(s)	785
EarI	CTCTTC	1 cut(s)	753
Eco130I	CCWWGG	6 cut(s)	147, 399, 414, 447, 476, 828
Eco147I	AGGCCT	3 cut(s)	63, 190, 924
Eco24I	GRGCYC	1 cut(s)	748
Eco47I	GGWCC	5 cut(s)	253, 487, 561, 702, 800
Eco88I	CYCGRG	1 cut(s)	385
EcoO109I	RGGNCCY	1 cut(s)	458
EcoRII	CCWGG	2 cut(s)	347, 867
EcoT14I	CCWWGG	6 cut(s)	147, 399, 414, 447, 476, 828
EcoT38I	GRGCYC	1 cut(s)	748
ErhI	CCWWGG	6 cut(s)	147, 399, 414, 447, 476, 828
FaqI	GGGAC	3 cut(s)	500, 792, 813
FblI	GTMKAC	1 cut(s)	884
Fnu4HI	GCNGC	2 cut(s)	732, 762
FokI	GGATG	1 cut(s)	952
FriOI	GRGCYC	1 cut(s)	748
Fsp4HI	GCNGC	2 cut(s)	732, 762
FspBI	CTAG	3 cut(s)	173, 186, 545
GlaI	GCGC	1 cut(s)	1014
GluI	GCNGC	2 cut(s)	732, 762
GsaI	CCCAGC	1 cut(s)	1013
GsuI	CTGGAG	1 cut(s)	383
HapII	CCGG	1 cut(s)	326
HhaI	GCGC	1 cut(s)	1015
Hin6I	GCGC	1 cut(s)	1013
HinP1I	GCGC	1 cut(s)	1013
HinfI	GANTC	2 cut(s)	892, 971
HpaII	CCGG	1 cut(s)	326
HphI	GGTGA	1 cut(s)	613
Hpy166II	GTNNAC	2 cut(s)	373, 885
Hpy188I	TCNGA	2 cut(s)	694, 970
Hpy188III	TCNNGA	2 cut(s)	571, 790
Hpy8I	GTNNAC	2 cut(s)	373, 885
HpyAV	CCTTC	4 cut(s)	471, 647, 790, 973
HpyCH4III	ACNGT	2 cut(s)	424, 879
HpyCH4V	TGCA	9 cut(s)	32, 59, 86, 140, 315, 335, 378, 609, 764
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 665
HpyF3I	CTNAG	2 cut(s)	89, 230
HspAI	GCGC	1 cut(s)	1013
KpnI	GGTACC	1 cut(s)	172
Kzo9I	GATC	3 cut(s)	219, 573, 955
LguI	GCTCTTC	1 cut(s)	753
LmnI	GCTCC	3 cut(s)	431, 656, 902
Lsp1109I	GCAGC	2 cut(s)	743, 748
MaeI	CTAG	3 cut(s)	173, 186, 545
MaeIII	GTNAC	2 cut(s)	418, 907
MalI	GATC	3 cut(s)	221, 575, 957
MboI	GATC	3 cut(s)	219, 573, 955
MboII	GAAGA	6 cut(s)	292, 498, 526, 740, 805, 1004
MhlI	GDGCHC	1 cut(s)	748
MlsI	TGGCCA	3 cut(s)	134, 398, 833
MluCI	AATT	1 cut(s)	18
MluNI	TGGCCA	3 cut(s)	134, 398, 833
MlyI	GAGTC	1 cut(s)	901
MnlI	CCTC	7 cut(s)	74, 383, 449, 476, 914, 935, 972
Mox20I	TGGCCA	3 cut(s)	134, 398, 833
MscI	TGGCCA	3 cut(s)	134, 398, 833
MseI	TTAA	2 cut(s)	822, 1021
MslI	CAYNNNNRTG	2 cut(s)	32, 116
Msp20I	TGGCCA	3 cut(s)	134, 398, 833
MspA1I	CMGCKG	1 cut(s)	734
MspI	CCGG	1 cut(s)	326
MspR9I	CCNGG	2 cut(s)	349, 869
MvaI	CCWGG	2 cut(s)	349, 869
MwoI	GCNNNNNNNGC	2 cut(s)	56, 665
NcoI	CCATGG	2 cut(s)	447, 476
NdeII	GATC	3 cut(s)	219, 573, 955
NlaIV	GGNNCC	6 cut(s)	170, 412, 459, 488, 801, 1006
NmeAIII	GCCGAG	1 cut(s)	794
NspI	RCATGY	2 cut(s)	238, 322
OliI	CACNNNNGTG	1 cut(s)	116
PagI	TCATGA	1 cut(s)	570
PceI	AGGCCT	3 cut(s)	63, 190, 924
PciSI	GCTCTTC	1 cut(s)	753
PfeI	GAWTC	1 cut(s)	971
PkrI	GCNGC	2 cut(s)	733, 763
PleI	GAGTC	1 cut(s)	900
PpsI	GAGTC	1 cut(s)	900
Psp6I	CCWGG	2 cut(s)	347, 867
PspFI	CCCAGC	1 cut(s)	1009
PspGI	CCWGG	2 cut(s)	347, 867
PspN4I	GGNNCC	6 cut(s)	170, 412, 459, 488, 801, 1006
PspPI	GGNCC	6 cut(s)	253, 458, 487, 561, 702, 800
PsrI	GAACNNNNNNTAC	2 cut(s)	403, 435
PstI	CTGCAG	1 cut(s)	380
PvuII	CAGCTG	1 cut(s)	734
RsaI	GTAC	2 cut(s)	170, 591
RsaNI	GTAC	2 cut(s)	169, 590
RseI	CAYNNNNRTG	2 cut(s)	32, 116
SapI	GCTCTTC	1 cut(s)	753
SaqAI	TTAA	2 cut(s)	822, 1021
SatI	GCNGC	2 cut(s)	732, 762
Sau3AI	GATC	3 cut(s)	219, 573, 955
Sau96I	GGNCC	6 cut(s)	253, 458, 487, 561, 702, 800
SchI	GAGTC	1 cut(s)	901
ScrFI	CCNGG	2 cut(s)	349, 869
SduI	GDGCHC	1 cut(s)	748
SetI	ASST	8 cut(s)	116, 174, 210, 405, 416, 615, 736, 907
SfcI	CTRYAG	1 cut(s)	376
SinI	GGWCC	5 cut(s)	253, 487, 561, 702, 800
SmiMI	CAYNNNNRTG	2 cut(s)	32, 116
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
Sse9I	AATT	1 cut(s)	18
SseBI	AGGCCT	3 cut(s)	63, 190, 924
SsiI	CCGC	1 cut(s)	624
SspMI	CTAG	3 cut(s)	173, 186, 545
StuI	AGGCCT	3 cut(s)	63, 190, 924
StyD4I	CCNGG	2 cut(s)	347, 867
StyI	CCWWGG	6 cut(s)	147, 399, 414, 447, 476, 828
TaaI	ACNGT	2 cut(s)	424, 879
TasI	AATT	1 cut(s)	18
TatI	WGTACW	1 cut(s)	589
TfiI	GAWTC	1 cut(s)	971
Tru1I	TTAA	2 cut(s)	822, 1021
Tru9I	TTAA	2 cut(s)	822, 1021
TscAI	CASTG	2 cut(s)	39, 666
TseI	GCWGC	2 cut(s)	731, 761
TspDTI	ATGAA	2 cut(s)	293, 559
TspRI	CASTG	2 cut(s)	39, 666
VpaK11BI	GGWCC	5 cut(s)	253, 487, 561, 702, 800
XceI	RCATGY	2 cut(s)	238, 322
XcmI	CCANNNNNNNNNTGG	2 cut(s)	208, 841
XmiI	GTMKAC	1 cut(s)	884
XspI	CTAG	3 cut(s)	173, 186, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.