Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Reverse (-)

12152142 .. 12153603

Gene Structure 1462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00227870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGAGTTCCATGACTACAATTTTTGTCATTGCAGTATGCTTTGTTCAAGCCTTGTATGCAGGCCTCTCCATCATTTCAATCCTTGCACTAAGGCAGGGCATGAGCCACTACACCTTTGTGGTGTATCGTATGGCCATTGCAACTGCCTTGGGAAGTCCACTGGCATGGTATCTAGAGAGACATTCTAGGCCTACAATGACCATCAAGGTCATGGCAAAGATCATGCTGCTAAGCATGTTTGACCCTGTACTGGACCAAAACTTGTACTATGTGGGCATGGAGAACTCCAATGCCACATTCACATCGGCCATGTGCAACATGCTTCCGGTATTTGCATTTGTCATGGCTTGGATTTTCAGGTTGGAGAATGTGGACTACAGACACCCGAGGGGATTGGCCAAGGTTCTAGGAACCTTGGTTTCTGTGGTAGCAGCAATCCTCCTTACCATGGTCAAGGGGTCTTCTCTCAAGTTGCCATGGGCAAGGAACCATGAGAAAAATCATTCTTCACAGCCCAAAGTCAAGGGTGCTATCTTCCTAACACTAGCCTGCTTCTGCTGGTCCTGTTTCATAGTCCTCCAAGCCAATGTACTCAAGTCCTACCCCTGCAAGCTCTCTCTCACCGCTTTGATTTGCTTCTGGGGTATGGTGGAAGGAGCAGTGGTGGCTATTGTGGTTGAAAAGGAAAATTCAGAAGCATGGTCCATACACTTCGACTTCAAGTTGCTCGCAGCTGTTTATGGGGCTCTTCTATCGGGGGCTGTATATTATGTCATGGGGCTGGTTGTGACGAAGTCTAAGAAGGGACCAGTTTTCTACTCTGTCTTTAACCCCTTGGCCACCCTGCTTGTGGCGATTTTGGGATCATTTTTTCTGGCAGAACAATTGTATACTGGAATTCTCATTGGAGCTGTAATCATTGTGGGAGGCCTCTATCTTGTTCTTTGGGGAAAAGCAAGAGATCAGCCTCCCTCTTTGAATGCCAATGTGGAAGAACCAACTGGAACCCCAGCAATAGACGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

341

Amino Acids

37.47

Weight (kDa)

8.98

Isoelectric Point (pI)

28.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	10 - 149	8.9e-12	EamA-like transporter family
EamA	PF00892	175 - 315	1.2e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	890
AciI	CCGC	1 cut(s)	624
AclWI	GGATC	1 cut(s)	871
AcoI	YGGCCR	4 cut(s)	132, 306, 396, 837
AcsI	RAATTY	2 cut(s)	688, 897
AfaI	GTAC	3 cut(s)	249, 266, 591
AfiI	CCNNNNNNNGG	3 cut(s)	250, 448, 850
AgsI	TTSAA	5 cut(s)	47, 78, 680, 721, 979
AjuI	GAANNNNNNNTTGG	2 cut(s)	281, 313
AleI	CACNNNNGTG	1 cut(s)	116
AluBI	AGCT	3 cut(s)	613, 734, 911
AluI	AGCT	3 cut(s)	613, 734, 911
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	1 cut(s)	871
Ama87I	CYCGRG	1 cut(s)	385
AoxI	GGCC	7 cut(s)	61, 132, 188, 306, 396, 837, 928
ApeKI	GCWGC	3 cut(s)	226, 431, 731
ApoI	RAATTY	2 cut(s)	688, 897
AspS9I	GGNCC	4 cut(s)	253, 561, 702, 806
AsuHPI	GGTGA	1 cut(s)	613
AvaI	CYCGRG	1 cut(s)	385
AvaII	GGWCC	4 cut(s)	253, 561, 702, 806
BalI	TGGCCA	3 cut(s)	134, 398, 839
BanII	GRGCYC	1 cut(s)	748
BbsI	GAAGAC	1 cut(s)	453
BbvI	GCAGC	3 cut(s)	213, 443, 743
BccI	CCATC	2 cut(s)	77, 209
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	4 cut(s)	173, 186, 407, 545
BfmI	CTRYAG	1 cut(s)	376
BisI	GCNGC	3 cut(s)	227, 432, 732
BlpI	GCTNAGC	1 cut(s)	230
BlsI	GCNGC	3 cut(s)	228, 433, 733
Bme18I	GGWCC	4 cut(s)	253, 561, 702, 806
BmeT110I	CYCGRG	1 cut(s)	385
BmgT120I	GGNCC	4 cut(s)	253, 561, 702, 806
BmiI	GGNNCC	4 cut(s)	412, 488, 807, 1006
BpiI	GAAGAC	1 cut(s)	453
Bpu1102I	GCTNAGC	1 cut(s)	230
BpuEI	CTTGAG	2 cut(s)	452, 578
BsaJI	CCNNGG	7 cut(s)	147, 386, 399, 414, 447, 476, 834
BsaWI	WCCGGW	1 cut(s)	325
BsaXI	ACNNNNNCTCC	2 cut(s)	648, 678
Bsc4I	CCNNNNNNNGG	3 cut(s)	250, 448, 850
Bse1I	ACTGG	5 cut(s)	165, 255, 809, 898, 1006
Bse3DI	GCAATG	2 cut(s)	27, 135
BseDI	CCNNGG	7 cut(s)	147, 386, 399, 414, 447, 476, 834
BseLI	CCNNNNNNNGG	3 cut(s)	250, 448, 850
BseMI	GCAATG	2 cut(s)	27, 135
BseNI	ACTGG	5 cut(s)	165, 255, 809, 898, 1006
BseXI	GCAGC	3 cut(s)	213, 443, 743
BseYI	CCCAGC	1 cut(s)	1009
BshFI	GGCC	7 cut(s)	63, 134, 190, 308, 398, 839, 930
BsiHKCI	CYCGRG	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	326
BslFI	GGGAC	1 cut(s)	819
BslI	CCNNNNNNNGG	3 cut(s)	250, 448, 850
BsmAI	GTCTC	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	819
BsmI	GAATGC	1 cut(s)	985
BsnI	GGCC	7 cut(s)	63, 134, 190, 308, 398, 839, 930
BsoBI	CYCGRG	1 cut(s)	385
Bsp1286I	GDGCHC	1 cut(s)	748
Bsp143I	GATC	3 cut(s)	219, 863, 961
Bsp1720I	GCTNAGC	1 cut(s)	230
Bsp19I	CCATGG	2 cut(s)	447, 476
BspACI	CCGC	1 cut(s)	624
BspANI	GGCC	7 cut(s)	63, 134, 190, 308, 398, 839, 930
BspLI	GGNNCC	4 cut(s)	412, 488, 807, 1006
BspPI	GGATC	1 cut(s)	871
BspQI	GCTCTTC	1 cut(s)	753
BsrDI	GCAATG	2 cut(s)	27, 135
BsrI	ACTGG	5 cut(s)	165, 255, 809, 898, 1006
BssECI	CCNNGG	7 cut(s)	147, 386, 399, 414, 447, 476, 834
BssMI	GATC	3 cut(s)	219, 863, 961
BssNAI	GTATAC	1 cut(s)	891
BssT1I	CCWWGG	6 cut(s)	147, 399, 414, 447, 476, 834
Bst1107I	GTATAC	1 cut(s)	891
Bst6I	CTCTTC	1 cut(s)	753
BstC8I	GCNNGC	4 cut(s)	61, 550, 611, 729
BstDEI	CTNAG	3 cut(s)	89, 230, 798
BstDSI	CCRYGG	2 cut(s)	447, 476
BstKTI	GATC	3 cut(s)	222, 866, 964
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	3 cut(s)	219, 863, 961
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 665
BstNSI	RCATGY	2 cut(s)	238, 322
BstSFI	CTRYAG	1 cut(s)	376
BstV1I	GCAGC	3 cut(s)	213, 443, 743
BstV2I	GAAGAC	1 cut(s)	453
BstXI	CCANNNNNNTGG	1 cut(s)	165
BstZ17I	GTATAC	1 cut(s)	891
BsuRI	GGCC	7 cut(s)	63, 134, 190, 308, 398, 839, 930
BtgI	CCRYGG	2 cut(s)	447, 476
BtsI	GCAGTG	1 cut(s)	666
BtsIMutI	CAGTG	2 cut(s)	158, 666
Cac8I	GCNNGC	4 cut(s)	61, 550, 611, 729
Cfr13I	GGNCC	4 cut(s)	253, 561, 702, 806
Csp6I	GTAC	3 cut(s)	248, 265, 590
CspCI	CAANNNNNGTGG	2 cut(s)	829, 864
CviQI	GTAC	3 cut(s)	248, 265, 590
DdeI	CTNAG	3 cut(s)	89, 230, 798
DpnI	GATC	3 cut(s)	221, 865, 963
DpnII	GATC	3 cut(s)	219, 863, 961
EaeI	YGGCCR	4 cut(s)	132, 306, 396, 837
Eam1104I	CTCTTC	1 cut(s)	753
EarI	CTCTTC	1 cut(s)	753
Eco130I	CCWWGG	6 cut(s)	147, 399, 414, 447, 476, 834
Eco147I	AGGCCT	3 cut(s)	63, 190, 930
Eco24I	GRGCYC	1 cut(s)	748
Eco47I	GGWCC	4 cut(s)	253, 561, 702, 806
Eco88I	CYCGRG	1 cut(s)	385
EcoRI	GAATTC	1 cut(s)	897
EcoT14I	CCWWGG	6 cut(s)	147, 399, 414, 447, 476, 834
EcoT38I	GRGCYC	1 cut(s)	748
ErhI	CCWWGG	6 cut(s)	147, 399, 414, 447, 476, 834
FaqI	GGGAC	1 cut(s)	819
FblI	GTMKAC	1 cut(s)	890
Fnu4HI	GCNGC	3 cut(s)	227, 432, 732
FriOI	GRGCYC	1 cut(s)	748
Fsp4HI	GCNGC	3 cut(s)	227, 432, 732
FspBI	CTAG	4 cut(s)	173, 186, 407, 545
GluI	GCNGC	3 cut(s)	227, 432, 732
GsaI	CCCAGC	1 cut(s)	1013
HaeIII	GGCC	7 cut(s)	63, 134, 190, 308, 398, 839, 930
HapII	CCGG	1 cut(s)	326
HpaII	CCGG	1 cut(s)	326
HphI	GGTGA	1 cut(s)	613
Hpy166II	GTNNAC	3 cut(s)	158, 373, 891
Hpy188I	TCNGA	1 cut(s)	694
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	3 cut(s)	158, 373, 891
HpyAV	CCTTC	2 cut(s)	647, 796
HpyCH4V	TGCA	7 cut(s)	32, 59, 86, 140, 315, 335, 609
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 665
HpyF3I	CTNAG	3 cut(s)	89, 230, 798
Kzo9I	GATC	3 cut(s)	219, 863, 961
LguI	GCTCTTC	1 cut(s)	753
LmnI	GCTCC	2 cut(s)	656, 908
Lsp1109I	GCAGC	3 cut(s)	213, 443, 743
MaeI	CTAG	4 cut(s)	173, 186, 407, 545
MaeIII	GTNAC	1 cut(s)	787
MalI	GATC	3 cut(s)	221, 865, 963
MboI	GATC	3 cut(s)	219, 863, 961
MboII	GAAGA	5 cut(s)	453, 498, 526, 740, 1004
MfeI	CAATTG	1 cut(s)	884
MhlI	GDGCHC	1 cut(s)	748
MlsI	TGGCCA	3 cut(s)	134, 398, 839
MluCI	AATT	4 cut(s)	18, 688, 884, 897
MluNI	TGGCCA	3 cut(s)	134, 398, 839
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	8 cut(s)	74, 381, 449, 587, 920, 941, 978, 982
Mox20I	TGGCCA	3 cut(s)	134, 398, 839
MscI	TGGCCA	3 cut(s)	134, 398, 839
MseI	TTAA	2 cut(s)	828, 1024
MslI	CAYNNNNRTG	2 cut(s)	116, 163
Msp20I	TGGCCA	3 cut(s)	134, 398, 839
MspA1I	CMGCKG	1 cut(s)	734
MspI	CCGG	1 cut(s)	326
MunI	CAATTG	1 cut(s)	884
Mva1269I	GAATGC	1 cut(s)	985
MwoI	GCNNNNNNNGC	2 cut(s)	56, 665
NcoI	CCATGG	2 cut(s)	447, 476
NdeII	GATC	3 cut(s)	219, 863, 961
NlaIV	GGNNCC	4 cut(s)	412, 488, 807, 1006
NmuCI	GTSAC	1 cut(s)	787
NspI	RCATGY	2 cut(s)	238, 322
OliI	CACNNNNGTG	1 cut(s)	116
PceI	AGGCCT	3 cut(s)	63, 190, 930
PciSI	GCTCTTC	1 cut(s)	753
PctI	GAATGC	1 cut(s)	985
PflFI	GACNNNGTC	1 cut(s)	793
PkrI	GCNGC	3 cut(s)	228, 433, 733
PspFI	CCCAGC	1 cut(s)	1009
PspN4I	GGNNCC	4 cut(s)	412, 488, 807, 1006
PspPI	GGNCC	4 cut(s)	253, 561, 702, 806
PsrI	GAACNNNNNNTAC	2 cut(s)	27, 59
PsyI	GACNNNGTC	1 cut(s)	793
PvuII	CAGCTG	1 cut(s)	734
RsaI	GTAC	3 cut(s)	249, 266, 591
RsaNI	GTAC	3 cut(s)	248, 265, 590
RseI	CAYNNNNRTG	2 cut(s)	116, 163
SapI	GCTCTTC	1 cut(s)	753
SaqAI	TTAA	2 cut(s)	828, 1024
SatI	GCNGC	3 cut(s)	227, 432, 732
Sau3AI	GATC	3 cut(s)	219, 863, 961
Sau96I	GGNCC	4 cut(s)	253, 561, 702, 806
SduI	GDGCHC	1 cut(s)	748
SetI	ASST	8 cut(s)	116, 210, 362, 405, 416, 615, 736, 913
SfcI	CTRYAG	1 cut(s)	376
SinI	GGWCC	4 cut(s)	253, 561, 702, 806
SmiMI	CAYNNNNRTG	2 cut(s)	116, 163
SmlI	CTYRAG	2 cut(s)	467, 593
SmoI	CTYRAG	2 cut(s)	467, 593
Sse9I	AATT	4 cut(s)	18, 688, 884, 897
SseBI	AGGCCT	3 cut(s)	63, 190, 930
SsiI	CCGC	1 cut(s)	624
SspMI	CTAG	4 cut(s)	173, 186, 407, 545
StuI	AGGCCT	3 cut(s)	63, 190, 930
StyI	CCWWGG	6 cut(s)	147, 399, 414, 447, 476, 834
TaqI	TCGA	1 cut(s)	714
TasI	AATT	4 cut(s)	18, 688, 884, 897
TatI	WGTACW	3 cut(s)	247, 264, 589
Tru1I	TTAA	2 cut(s)	828, 1024
Tru9I	TTAA	2 cut(s)	828, 1024
TscAI	CASTG	2 cut(s)	165, 666
TseFI	GTSAC	1 cut(s)	787
TseI	GCWGC	3 cut(s)	226, 431, 731
Tsp45I	GTSAC	1 cut(s)	787
TspDTI	ATGAA	1 cut(s)	559
TspRI	CASTG	2 cut(s)	165, 666
Tth111I	GACNNNGTC	1 cut(s)	793
VpaK11BI	GGWCC	4 cut(s)	253, 561, 702, 806
XapI	RAATTY	2 cut(s)	688, 897
XbaI	TCTAGA	1 cut(s)	172
XceI	RCATGY	2 cut(s)	238, 322
XcmI	CCANNNNNNNNNTGG	2 cut(s)	208, 847
XmiI	GTMKAC	1 cut(s)	890
XspI	CTAG	4 cut(s)	173, 186, 407, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.