Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Forward (+)

43148269 .. 43149988

Gene Structure 1720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG295900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGCCTAAGGAGTCAGTTTCTCGGATGCTCACTCAAGCAAAGCCATTTGTGGCTGTGATTCTGATGCAATTTGGGTTAGCAGGAATGTCCATAATTACAAAGTTTGCTCTAAACCAAGGGATGAGCCAACATGTATTAGTTGTCTATAGGAATGCTGTTGCCTTCGTTTTTATAACTCCTTTTGCCCTTTTCTTTGATAGGAAAATAAGGCCAAAGATGAGCCTTTCAGTCTTTGTCAAGATTGTGTTACTCGGCCTATTAGAGCCTGTAATCGACGGGAACTTGTTCTATACTGGGATGAAGCTGACAACAGCAACATTTACAACTGCCATGTGCAATGTTCTTCCTGCCTTTGCATTCATAATGGCTTGGATTTTCAGGCTTGAGATGGTTGATATTAGAAGACTTCACAGCCAGGCAAAGATATTGGGGACCATAGTGACTGTGGGAGGAGCTATGCTTATGACTCTAGTCAATGGACCCATGTTGACTCTTCCATGGACAAGAAGCAGTAGCCATCATCAATCTACAAGTTCCACAGATAGCCAAGATCCCATAAAGGGTGCTCTCATGATTACAGCTGGATGTTTCTGCTGGGCTAGTTTCTTCATTCTTCAAGCAATTACTCTAAAAGTATACCCTGCTGAGCTCTCCCTAACAGCTTGGATATGTTTGATGGGTGCGTTGGAAGGTACCGTGGCAGCTCTAGCTTTTGAGTGGCATAACCCTGCAGCTTGGGCCATACACTTGGATTCTAAGTTGTTAGCTGCTGTTTACGGTGGAGTAATATGTTCTGGAGTGACTTATTATATTCAGGGGATGGTAATGAAGGAAAGAGGACCTGTTTTTGTGACTGCATTTAATCCCCTAAGCATGGTCATTGTAGCCATTTTGAGCTCCATCGCCTTGTCCGAAATACTGTACTTGGGAAGGGTAATGGGAGCAATGGTTATAGTAATTGGCCTGTATATGGTCCTCTGGGGTAAAAGTAAGGATCCTCTTCCACAACCAGATTCAGAAGCAACTGAAGATAAAGTAGCCACAACAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032870 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:0099568 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

350

Amino Acids

38.27

Weight (kDa)

9.06

Isoelectric Point (pI)

36.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	18 - 156	8.8e-09	EamA-like transporter family
EamA	PF00892	187 - 326	8.5e-12	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	173
Acc65I	GGTACC	1 cut(s)	692
AccB1I	GGYRCC	1 cut(s)	692
AccI	GTMKAC	1 cut(s)	636
AclWI	GGATC	3 cut(s)	545, 989, 1002
AcuI	CTGAAG	1 cut(s)	1047
AfaI	GTAC	2 cut(s)	694, 923
AfiI	CCNNNNNNNGG	3 cut(s)	560, 874, 970
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	1 cut(s)	617
AjnI	CCWGG	1 cut(s)	414
Alw21I	GWGCWC	3 cut(s)	568, 651, 899
AlwI	GGATC	3 cut(s)	545, 989, 1002
AoxI	GGCC	4 cut(s)	209, 253, 738, 961
ApeKI	GCWGC	3 cut(s)	701, 731, 767
Asp700I	GAANNNNTTC	1 cut(s)	284
Asp718I	GGTACC	1 cut(s)	692
AspS9I	GGNCC	5 cut(s)	432, 479, 738, 839, 973
AvaII	GGWCC	4 cut(s)	432, 479, 839, 973
AxyI	CCTNAGG	1 cut(s)	6
BamHI	GGATCC	1 cut(s)	994
BanI	GGYRCC	1 cut(s)	692
BanII	GRGCYC	2 cut(s)	651, 899
BbsI	GAAGAC	1 cut(s)	409
Bbv12I	GWGCWC	3 cut(s)	568, 651, 899
BbvI	GCAGC	3 cut(s)	713, 743, 754
BccI	CCATC	5 cut(s)	382, 525, 670, 814, 908
BciT130I	CCWGG	1 cut(s)	416
BfaI	CTAG	3 cut(s)	470, 600, 707
BfmI	CTRYAG	2 cut(s)	145, 729
BisI	GCNGC	3 cut(s)	702, 732, 768
BlpI	GCTNAGC	1 cut(s)	645
BlsI	GCNGC	3 cut(s)	703, 733, 769
Bme1390I	CCNGG	1 cut(s)	416
Bme18I	GGWCC	4 cut(s)	432, 479, 839, 973
BmgT120I	GGNCC	5 cut(s)	432, 479, 738, 839, 973
BmiI	GGNNCC	4 cut(s)	433, 481, 694, 996
BmrFI	CCNGG	1 cut(s)	416
BmrI	ACTGGG	1 cut(s)	303
BmsI	GCATC	2 cut(s)	15, 54
BmuI	ACTGGG	1 cut(s)	303
BoxI	GACNNNNGTC	1 cut(s)	470
BpiI	GAAGAC	1 cut(s)	409
BpmI	CTGGAG	1 cut(s)	816
Bpu10I	CCTNAGC	1 cut(s)	869
Bpu1102I	GCTNAGC	1 cut(s)	645
BpuEI	CTTGAG	2 cut(s)	18, 404
BsaJI	CCNNGG	3 cut(s)	115, 497, 696
BsaXI	ACNNNNNCTCC	2 cut(s)	933, 963
Bsc4I	CCNNNNNNNGG	3 cut(s)	560, 874, 970
Bse1I	ACTGG	1 cut(s)	298
Bse21I	CCTNAGG	1 cut(s)	6
Bse3DI	GCAATG	2 cut(s)	343, 951
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	3 cut(s)	115, 497, 696
BseGI	GGATG	5 cut(s)	30, 126, 303, 590, 825
BseLI	CCNNNNNNNGG	3 cut(s)	560, 874, 970
BseMI	GCAATG	2 cut(s)	343, 951
BseMII	CTCAG	1 cut(s)	636
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	1 cut(s)	465
BseXI	GCAGC	3 cut(s)	713, 743, 754
BseYI	CCCAGC	1 cut(s)	594
BshFI	GGCC	4 cut(s)	211, 255, 740, 963
BshNI	GGYRCC	1 cut(s)	692
BsiHKAI	GWGCWC	3 cut(s)	568, 651, 899
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	3 cut(s)	560, 874, 970
BsmFI	GGGAC	1 cut(s)	445
BsmI	GAATGC	2 cut(s)	157, 356
BsnI	GGCC	4 cut(s)	211, 255, 740, 963
Bsp1286I	GDGCHC	3 cut(s)	568, 651, 899
Bsp143I	GATC	2 cut(s)	550, 994
Bsp1720I	GCTNAGC	1 cut(s)	645
Bsp19I	CCATGG	1 cut(s)	497
BspANI	GGCC	4 cut(s)	211, 255, 740, 963
BspCNI	CTCAG	1 cut(s)	637
BspHI	TCATGA	1 cut(s)	570
BspLI	GGNNCC	4 cut(s)	433, 481, 694, 996
BspMAI	CTGCAG	1 cut(s)	733
BspPI	GGATC	3 cut(s)	545, 989, 1002
BspT107I	GGYRCC	1 cut(s)	692
BsrDI	GCAATG	2 cut(s)	343, 951
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	3 cut(s)	115, 497, 696
BssMI	GATC	2 cut(s)	550, 994
BssNAI	GTATAC	1 cut(s)	637
BssT1I	CCWWGG	2 cut(s)	115, 497
Bst1107I	GTATAC	1 cut(s)	637
Bst2UI	CCWGG	1 cut(s)	416
Bst4CI	ACNGT	5 cut(s)	445, 697, 779, 921, 1048
Bst6I	CTCTTC	2 cut(s)	498, 1005
BstDEI	CTNAG	4 cut(s)	6, 645, 756, 869
BstDSI	CCRYGG	2 cut(s)	497, 696
BstF5I	GGATG	5 cut(s)	30, 126, 303, 590, 825
BstKTI	GATC	2 cut(s)	553, 997
BstMBI	GATC	2 cut(s)	550, 994
BstMWI	GCNNNNNNNGC	2 cut(s)	707, 737
BstNI	CCWGG	1 cut(s)	416
BstNSI	RCATGY	1 cut(s)	134
BstPAI	GACNNNNGTC	1 cut(s)	470
BstSCI	CCNGG	1 cut(s)	414
BstSFI	CTRYAG	2 cut(s)	145, 729
BstV1I	GCAGC	3 cut(s)	713, 743, 754
BstV2I	GAAGAC	1 cut(s)	409
BstX2I	RGATCY	2 cut(s)	550, 994
BstXI	CCANNNNNNTGG	1 cut(s)	748
BstYI	RGATCY	2 cut(s)	550, 994
BstZ17I	GTATAC	1 cut(s)	637
Bsu36I	CCTNAGG	1 cut(s)	6
BsuRI	GGCC	4 cut(s)	211, 255, 740, 963
BtgI	CCRYGG	2 cut(s)	497, 696
BtgZI	GCGATG	1 cut(s)	886
BtsCI	GGATG	5 cut(s)	30, 126, 303, 590, 825
CciI	TCATGA	1 cut(s)	570
Cfr13I	GGNCC	5 cut(s)	432, 479, 738, 839, 973
Csp6I	GTAC	2 cut(s)	693, 922
CviAII	CATG	6 cut(s)	131, 331, 484, 498, 571, 874
CviQI	GTAC	2 cut(s)	693, 922
DdeI	CTNAG	4 cut(s)	6, 645, 756, 869
DpnI	GATC	2 cut(s)	552, 996
DpnII	GATC	2 cut(s)	550, 994
Eam1104I	CTCTTC	2 cut(s)	498, 1005
EarI	CTCTTC	2 cut(s)	498, 1005
Ecl136II	GAGCTC	2 cut(s)	649, 897
Eco130I	CCWWGG	2 cut(s)	115, 497
Eco24I	GRGCYC	2 cut(s)	651, 899
Eco47I	GGWCC	4 cut(s)	432, 479, 839, 973
Eco53kI	GAGCTC	2 cut(s)	649, 897
Eco57I	CTGAAG	1 cut(s)	1047
Eco81I	CCTNAGG	1 cut(s)	6
EcoICRI	GAGCTC	2 cut(s)	649, 897
EcoO109I	RGGNCCY	1 cut(s)	839
EcoRII	CCWGG	1 cut(s)	414
EcoT14I	CCWWGG	2 cut(s)	115, 497
EcoT38I	GRGCYC	2 cut(s)	651, 899
ErhI	CCWWGG	2 cut(s)	115, 497
FaeI	CATG	6 cut(s)	134, 334, 487, 501, 574, 877
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	6 cut(s)	130, 330, 483, 497, 570, 873
FblI	GTMKAC	1 cut(s)	636
Fnu4HI	GCNGC	3 cut(s)	702, 732, 768
FokI	GGATG	5 cut(s)	37, 133, 310, 597, 832
FriOI	GRGCYC	2 cut(s)	651, 899
Fsp4HI	GCNGC	3 cut(s)	702, 732, 768
FspBI	CTAG	3 cut(s)	470, 600, 707
GluI	GCNGC	3 cut(s)	702, 732, 768
GsaI	CCCAGC	1 cut(s)	598
GsuI	CTGGAG	1 cut(s)	816
HaeIII	GGCC	4 cut(s)	211, 255, 740, 963
Hin1II	CATG	6 cut(s)	134, 334, 487, 501, 574, 877
HincII	GTYRAC	1 cut(s)	489
HindII	GTYRAC	1 cut(s)	489
HinfI	GANTC	6 cut(s)	11, 58, 466, 490, 752, 1013
Hpy166II	GTNNAC	3 cut(s)	489, 637, 775
Hpy188I	TCNGA	4 cut(s)	24, 63, 913, 1018
Hpy188III	TCNNGA	3 cut(s)	238, 571, 795
Hpy8I	GTNNAC	3 cut(s)	489, 637, 775
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	4 cut(s)	172, 683, 823, 924
HpyCH4III	ACNGT	5 cut(s)	445, 697, 779, 921, 1048
HpyCH4V	TGCA	5 cut(s)	67, 336, 356, 731, 857
HpyF10VI	GCNNNNNNNGC	2 cut(s)	707, 737
HpyF3I	CTNAG	4 cut(s)	6, 645, 756, 869
Hsp92II	CATG	6 cut(s)	134, 334, 487, 501, 574, 877
KpnI	GGTACC	1 cut(s)	696
Kzo9I	GATC	2 cut(s)	550, 994
LmnI	GCTCC	3 cut(s)	452, 902, 941
Lsp1109I	GCAGC	3 cut(s)	713, 743, 754
LweI	GCATC	2 cut(s)	15, 54
MaeI	CTAG	3 cut(s)	470, 600, 707
MaeIII	GTNAC	4 cut(s)	246, 439, 799, 850
MalI	GATC	2 cut(s)	552, 996
MboI	GATC	2 cut(s)	550, 994
MboII	GAAGA	7 cut(s)	335, 414, 485, 598, 605, 992, 1040
MflI	RGATCY	2 cut(s)	550, 994
MhlI	GDGCHC	3 cut(s)	568, 651, 899
MluCI	AATT	4 cut(s)	68, 93, 621, 957
MlyI	GAGTC	3 cut(s)	20, 460, 484
MmeI	TCCRAC	1 cut(s)	666
MnlI	CCTC	4 cut(s)	443, 830, 986, 1008
MroXI	GAANNNNTTC	1 cut(s)	284
MseI	TTAA	2 cut(s)	861, 1051
MspA1I	CMGCKG	1 cut(s)	581
MspR9I	CCNGG	1 cut(s)	416
Mva1269I	GAATGC	2 cut(s)	157, 356
MvaI	CCWGG	1 cut(s)	416
MwoI	GCNNNNNNNGC	2 cut(s)	707, 737
NcoI	CCATGG	1 cut(s)	497
NdeII	GATC	2 cut(s)	550, 994
NlaIII	CATG	6 cut(s)	134, 334, 487, 501, 574, 877
NlaIV	GGNNCC	4 cut(s)	433, 481, 694, 996
NmeAIII	GCCGAG	1 cut(s)	231
NmuCI	GTSAC	3 cut(s)	439, 799, 850
NspI	RCATGY	1 cut(s)	134
PagI	TCATGA	1 cut(s)	570
PciI	ACATGT	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	909
PctI	GAATGC	2 cut(s)	157, 356
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	3 cut(s)	58, 752, 1013
PkrI	GCNGC	3 cut(s)	703, 733, 769
PleI	GAGTC	3 cut(s)	19, 460, 484
PpsI	GAGTC	3 cut(s)	19, 460, 484
PpuMI	RGGWCCY	1 cut(s)	839
PscI	ACATGT	1 cut(s)	130
PshAI	GACNNNNGTC	1 cut(s)	470
PsiI	TTATAA	1 cut(s)	173
Psp124BI	GAGCTC	2 cut(s)	651, 899
Psp5II	RGGWCCY	1 cut(s)	839
Psp6I	CCWGG	1 cut(s)	414
PspFI	CCCAGC	1 cut(s)	594
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	4 cut(s)	433, 481, 694, 996
PspPI	GGNCC	5 cut(s)	432, 479, 738, 839, 973
PspPPI	RGGWCCY	1 cut(s)	839
PstI	CTGCAG	1 cut(s)	733
PsuI	RGATCY	2 cut(s)	550, 994
PvuII	CAGCTG	1 cut(s)	581
RsaI	GTAC	2 cut(s)	694, 923
RsaNI	GTAC	2 cut(s)	693, 922
SacI	GAGCTC	2 cut(s)	651, 899
SaqAI	TTAA	2 cut(s)	861, 1051
SatI	GCNGC	3 cut(s)	702, 732, 768
Sau3AI	GATC	2 cut(s)	550, 994
Sau96I	GGNCC	5 cut(s)	432, 479, 738, 839, 973
SchI	GAGTC	3 cut(s)	20, 460, 484
ScrFI	CCNGG	1 cut(s)	416
SduI	GDGCHC	3 cut(s)	568, 651, 899
SfaNI	GCATC	2 cut(s)	15, 54
SfcI	CTRYAG	2 cut(s)	145, 729
SinI	GGWCC	4 cut(s)	432, 479, 839, 973
SmlI	CTYRAG	2 cut(s)	33, 383
SmoI	CTYRAG	2 cut(s)	33, 383
Sse9I	AATT	4 cut(s)	68, 93, 621, 957
SspMI	CTAG	3 cut(s)	470, 600, 707
SstI	GAGCTC	2 cut(s)	651, 899
StyD4I	CCNGG	1 cut(s)	414
StyI	CCWWGG	2 cut(s)	115, 497
TaaI	ACNGT	5 cut(s)	445, 697, 779, 921, 1048
TaqI	TCGA	1 cut(s)	273
TasI	AATT	4 cut(s)	68, 93, 621, 957
TatI	WGTACW	1 cut(s)	921
TfiI	GAWTC	3 cut(s)	58, 752, 1013
Tru1I	TTAA	2 cut(s)	861, 1051
Tru9I	TTAA	2 cut(s)	861, 1051
TseFI	GTSAC	3 cut(s)	439, 799, 850
TseI	GCWGC	3 cut(s)	701, 731, 767
Tsp45I	GTSAC	3 cut(s)	439, 799, 850
TspDTI	ATGAA	4 cut(s)	314, 349, 598, 842
VpaK11BI	GGWCC	4 cut(s)	432, 479, 839, 973
XceI	RCATGY	1 cut(s)	134
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
XmiI	GTMKAC	1 cut(s)	636
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	3 cut(s)	470, 600, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.