Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Forward (+)

12901801 .. 12903418

Gene Structure 1618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017109

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGTTTATGGGGTTGATCCGCCGGGCAAAGCTTGTGTTAGCTGTGATTTTGGTGCAGCTCGGGTATGCTGGGCTTTCGATAATCTCAATGTTTGTTCTAAAGAAGGGAATGAGTCCTTACACATTCATAGTGTACCGAATGGCCATTGCCACTATTGTTCTAGCTCCATTTGCATTCATTTTGGAGAGGAATTCAAGACCTCCGATGACTTGGTCCATCACTGCAAAGATAATGTTGCTGAGCCTTTTCAAGTTTGAGAAGGTTAGCCTTAGAAAACTGCACAGCATAGCAAAGGTGATGGGGACGGTCATCACAGTCGGGGGAGCAACTGTCTTGACTCTAGTTAGAGGTCCCTCTTTGTGTCTACCATGGCCCAATGAAGAAGAAATAAATCCTCATCAATCTGCGCAATACTATTCGGGTCAGAGAGACCTTGTGAAAGGAGCTCTATTTATCTCAGGAGCTTGCTTCTGCTGGTCTTGGTTTGTCATTTTGCAAGCAATTATCTTAAGATCCTACCCTTGTCAGCTCTCTCTCACAGCAATGATATGCTTTTGGGGTATGGTGGAAGGAGCAATACTGGCTTTTGTAGTTGAAAGGGGACATAGTGGAGTTTGGTCCATACAATTCAACATCAAACTTGCAATGCAATCTGTTGTTGCTTATTATGTGATGGGAATGGTAGTGAAGGAAAAGGGACCTGTTTTTTACTCGGCTTTTAATCCCTTGGCCACAGTAATGATTACAATCCCGGGTTCCTTTGTTTTAGCAGAACAATTGTACCTTGGGACTGTTATCGGAGCTGCTGTAATCATCATTGGTCTGTATCTCATTCTCTGGGGAAAACTAAAGGACCAATCTCCTCCATCACAGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

293

Amino Acids

32.31

Weight (kDa)

9.6

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	12 - 83	8.5e-06	EamA-like transporter family
EamA	PF00892	147 - 279	1.3e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	408
AccI	GTMKAC	1 cut(s)	364
AciI	CCGC	1 cut(s)	19
AclWI	GGATC	2 cut(s)	10, 507
AcoI	YGGCCR	2 cut(s)	141, 729
AcsI	RAATTY	1 cut(s)	190
AfaI	GTAC	2 cut(s)	134, 782
AflII	CTTAAG	1 cut(s)	508
AgsI	TTSAA	4 cut(s)	195, 250, 596, 631
AluBI	AGCT	8 cut(s)	31, 41, 58, 164, 446, 464, 529, 803
AluI	AGCT	8 cut(s)	31, 41, 58, 164, 446, 464, 529, 803
Alw21I	GWGCWC	1 cut(s)	448
Alw26I	GTCTC	1 cut(s)	423
AlwI	GGATC	2 cut(s)	10, 507
Ama87I	CYCGRG	2 cut(s)	59, 751
AoxI	GGCC	3 cut(s)	141, 371, 729
ApeKI	GCWGC	2 cut(s)	55, 803
ApoI	RAATTY	1 cut(s)	190
AspLEI	GCGC	1 cut(s)	409
AspS9I	GGNCC	6 cut(s)	213, 350, 372, 618, 698, 853
AsuC2I	CCSGG	3 cut(s)	23, 752, 753
AsuHPI	GGTGA	1 cut(s)	307
AvaI	CYCGRG	2 cut(s)	59, 751
AvaII	GGWCC	5 cut(s)	213, 350, 618, 698, 853
BaeI	ACNNNNGTAYC	2 cut(s)	764, 797
BalI	TGGCCA	2 cut(s)	143, 731
BanII	GRGCYC	1 cut(s)	448
BarI	GAAGNNNNNNTAC	2 cut(s)	561, 593
Bbv12I	GWGCWC	1 cut(s)	448
BbvI	GCAGC	2 cut(s)	67, 790
BccI	CCATC	4 cut(s)	224, 292, 667, 874
BcnI	CCSGG	3 cut(s)	23, 752, 753
BcoDI	GTCTC	1 cut(s)	423
BfaI	CTAG	2 cut(s)	161, 341
BfrI	CTTAAG	1 cut(s)	508
BisI	GCNGC	2 cut(s)	56, 804
BlpI	GCTNAGC	1 cut(s)	239
BlsI	GCNGC	2 cut(s)	57, 805
Bme1390I	CCNGG	3 cut(s)	23, 752, 753
Bme18I	GGWCC	5 cut(s)	213, 350, 618, 698, 853
BmeT110I	CYCGRG	2 cut(s)	59, 751
BmgT120I	GGNCC	6 cut(s)	213, 350, 372, 618, 698, 853
BmiI	GGNNCC	3 cut(s)	352, 699, 757
BmrFI	CCNGG	3 cut(s)	23, 752, 753
Bpu1102I	GCTNAGC	1 cut(s)	239
BpuMI	CCSGG	3 cut(s)	23, 752, 753
BsaBI	GATNNNNATC	1 cut(s)	746
BsaI	GGTCTC	1 cut(s)	423
BsaJI	CCNNGG	4 cut(s)	368, 726, 751, 784
BsaXI	ACNNNNNCTCC	4 cut(s)	315, 345, 792, 822
Bse1I	ACTGG	1 cut(s)	585
Bse3DI	GCAATG	3 cut(s)	144, 549, 651
Bse8I	GATNNNNATC	1 cut(s)	746
BseDI	CCNNGG	4 cut(s)	368, 726, 751, 784
BseJI	GATNNNNATC	1 cut(s)	746
BseMI	GCAATG	3 cut(s)	144, 549, 651
BseMII	CTCAG	2 cut(s)	230, 471
BseNI	ACTGG	1 cut(s)	585
BseRI	GAGGAG	1 cut(s)	852
BseXI	GCAGC	2 cut(s)	67, 790
BseYI	CCCAGC	1 cut(s)	68
BsgI	GTGCAG	2 cut(s)	74, 263
BshFI	GGCC	3 cut(s)	143, 373, 731
BsiHKAI	GWGCWC	1 cut(s)	448
BsiHKCI	CYCGRG	2 cut(s)	59, 751
BsiSI	CCGG	2 cut(s)	22, 752
BslFI	GGGAC	5 cut(s)	316, 336, 615, 711, 802
BsmAI	GTCTC	1 cut(s)	423
BsmFI	GGGAC	5 cut(s)	316, 336, 615, 711, 802
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	3 cut(s)	143, 373, 731
Bso31I	GGTCTC	1 cut(s)	423
BsoBI	CYCGRG	2 cut(s)	59, 751
Bsp1286I	GDGCHC	1 cut(s)	448
Bsp143I	GATC	2 cut(s)	15, 512
Bsp1720I	GCTNAGC	1 cut(s)	239
Bsp19I	CCATGG	1 cut(s)	368
BspACI	CCGC	1 cut(s)	19
BspANI	GGCC	3 cut(s)	143, 373, 731
BspCNI	CTCAG	2 cut(s)	231, 470
BspLI	GGNNCC	3 cut(s)	352, 699, 757
BspPI	GGATC	2 cut(s)	10, 507
BspTI	CTTAAG	1 cut(s)	508
BspTNI	GGTCTC	1 cut(s)	423
BsrDI	GCAATG	3 cut(s)	144, 549, 651
BsrI	ACTGG	1 cut(s)	585
BssECI	CCNNGG	4 cut(s)	368, 726, 751, 784
BssMI	GATC	2 cut(s)	15, 512
BssT1I	CCWWGG	3 cut(s)	368, 726, 784
Bst4CI	ACNGT	6 cut(s)	307, 316, 331, 736, 793, 873
BstAFI	CTTAAG	1 cut(s)	508
BstC8I	GCNNGC	2 cut(s)	466, 498
BstDEI	CTNAG	3 cut(s)	239, 269, 457
BstDSI	CCRYGG	1 cut(s)	368
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	2 cut(s)	18, 515
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	2 cut(s)	15, 512
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 581
BstSCI	CCNGG	3 cut(s)	21, 750, 751
BstV1I	GCAGC	2 cut(s)	67, 790
BstX2I	RGATCY	1 cut(s)	512
BstYI	RGATCY	1 cut(s)	512
BsuRI	GGCC	3 cut(s)	143, 373, 731
BtgI	CCRYGG	1 cut(s)	368
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	2 cut(s)	219, 878
Cac8I	GCNNGC	2 cut(s)	466, 498
CfoI	GCGC	1 cut(s)	409
Cfr13I	GGNCC	6 cut(s)	213, 350, 372, 618, 698, 853
Cfr9I	CCCGGG	1 cut(s)	751
Csp6I	GTAC	2 cut(s)	133, 781
CviAII	CATG	1 cut(s)	369
CviQI	GTAC	2 cut(s)	133, 781
DdeI	CTNAG	3 cut(s)	239, 269, 457
DpnI	GATC	2 cut(s)	17, 514
DpnII	GATC	2 cut(s)	15, 512
EaeI	YGGCCR	2 cut(s)	141, 729
EciI	GGCGGA	1 cut(s)	8
Ecl136II	GAGCTC	1 cut(s)	446
Eco130I	CCWWGG	3 cut(s)	368, 726, 784
Eco24I	GRGCYC	1 cut(s)	448
Eco31I	GGTCTC	1 cut(s)	423
Eco47I	GGWCC	5 cut(s)	213, 350, 618, 698, 853
Eco53kI	GAGCTC	1 cut(s)	446
Eco88I	CYCGRG	2 cut(s)	59, 751
EcoICRI	GAGCTC	1 cut(s)	446
EcoO109I	RGGNCCY	2 cut(s)	350, 698
EcoRI	GAATTC	1 cut(s)	190
EcoT14I	CCWWGG	3 cut(s)	368, 726, 784
EcoT38I	GRGCYC	1 cut(s)	448
ErhI	CCWWGG	3 cut(s)	368, 726, 784
FaeI	CATG	1 cut(s)	372
FaqI	GGGAC	5 cut(s)	316, 336, 615, 711, 802
FatI	CATG	1 cut(s)	368
FblI	GTMKAC	1 cut(s)	364
Fnu4HI	GCNGC	2 cut(s)	56, 804
FriOI	GRGCYC	1 cut(s)	448
Fsp4HI	GCNGC	2 cut(s)	56, 804
FspBI	CTAG	2 cut(s)	161, 341
FspI	TGCGCA	1 cut(s)	408
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	2 cut(s)	56, 804
GsaI	CCCAGC	1 cut(s)	72
HaeIII	GGCC	3 cut(s)	143, 373, 731
HapII	CCGG	2 cut(s)	22, 752
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	1 cut(s)	372
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	2 cut(s)	112, 337
HpaII	CCGG	2 cut(s)	22, 752
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	2 cut(s)	133, 365
Hpy188I	TCNGA	3 cut(s)	204, 426, 800
Hpy188III	TCNNGA	3 cut(s)	195, 334, 459
Hpy8I	GTNNAC	2 cut(s)	133, 365
HpyAV	CCTTC	4 cut(s)	97, 253, 563, 682
HpyCH4III	ACNGT	6 cut(s)	307, 316, 331, 736, 793, 873
HpyCH4V	TGCA	7 cut(s)	55, 173, 224, 280, 496, 644, 649
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 581
HpyF3I	CTNAG	3 cut(s)	239, 269, 457
Hsp92II	CATG	1 cut(s)	372
HspAI	GCGC	1 cut(s)	407
Kzo9I	GATC	2 cut(s)	15, 512
LmnI	GCTCC	6 cut(s)	169, 323, 443, 461, 572, 800
LpnPI	CCDG	8 cut(s)	35, 54, 444, 460, 566, 714, 765, 823
Lsp1109I	GCAGC	2 cut(s)	67, 790
MaeI	CTAG	2 cut(s)	161, 341
MalI	GATC	2 cut(s)	17, 514
MboI	GATC	2 cut(s)	15, 512
MboII	GAAGA	2 cut(s)	392, 395
MfeI	CAATTG	1 cut(s)	776
MflI	RGATCY	1 cut(s)	512
MhlI	GDGCHC	1 cut(s)	448
MlsI	TGGCCA	2 cut(s)	143, 731
MluCI	AATT	4 cut(s)	190, 501, 626, 776
MluNI	TGGCCA	2 cut(s)	143, 731
MlyI	GAGTC	2 cut(s)	121, 331
MnlI	CCTC	6 cut(s)	180, 210, 341, 364, 405, 873
Mox20I	TGGCCA	2 cut(s)	143, 731
MscI	TGGCCA	2 cut(s)	143, 731
MseI	TTAA	2 cut(s)	509, 720
MslI	CAYNNNNRTG	3 cut(s)	542, 737, 871
Msp20I	TGGCCA	2 cut(s)	143, 731
MspCI	CTTAAG	1 cut(s)	508
MspI	CCGG	2 cut(s)	22, 752
MspR9I	CCNGG	3 cut(s)	23, 752, 753
MunI	CAATTG	1 cut(s)	776
Mva1269I	GAATGC	1 cut(s)	173
MwoI	GCNNNNNNNGC	2 cut(s)	170, 581
NciI	CCSGG	3 cut(s)	23, 752, 753
NcoI	CCATGG	1 cut(s)	368
NdeII	GATC	2 cut(s)	15, 512
NlaIII	CATG	1 cut(s)	372
NlaIV	GGNNCC	3 cut(s)	352, 699, 757
NmeAIII	GCCGAG	1 cut(s)	692
NsbI	TGCGCA	1 cut(s)	408
PctI	GAATGC	1 cut(s)	173
PflFI	GACNNNGTC	1 cut(s)	211
PkrI	GCNGC	2 cut(s)	57, 805
PleI	GAGTC	2 cut(s)	120, 331
PpsI	GAGTC	2 cut(s)	120, 331
PpuMI	RGGWCCY	2 cut(s)	350, 698
Psp124BI	GAGCTC	1 cut(s)	448
Psp5II	RGGWCCY	2 cut(s)	350, 698
PspFI	CCCAGC	1 cut(s)	68
PspN4I	GGNNCC	3 cut(s)	352, 699, 757
PspPI	GGNCC	6 cut(s)	213, 350, 372, 618, 698, 853
PspPPI	RGGWCCY	2 cut(s)	350, 698
PsuI	RGATCY	1 cut(s)	512
PsyI	GACNNNGTC	1 cut(s)	211
RsaI	GTAC	2 cut(s)	134, 782
RsaNI	GTAC	2 cut(s)	133, 781
RseI	CAYNNNNRTG	3 cut(s)	542, 737, 871
SacI	GAGCTC	1 cut(s)	448
SaqAI	TTAA	2 cut(s)	509, 720
SatI	GCNGC	2 cut(s)	56, 804
Sau3AI	GATC	2 cut(s)	15, 512
Sau96I	GGNCC	6 cut(s)	213, 350, 372, 618, 698, 853
SchI	GAGTC	2 cut(s)	121, 331
ScrFI	CCNGG	3 cut(s)	23, 752, 753
SduI	GDGCHC	1 cut(s)	448
SinI	GGWCC	5 cut(s)	213, 350, 618, 698, 853
SmaI	CCCGGG	1 cut(s)	753
SmiMI	CAYNNNNRTG	3 cut(s)	542, 737, 871
SmlI	CTYRAG	1 cut(s)	508
SmoI	CTYRAG	1 cut(s)	508
Sse9I	AATT	4 cut(s)	190, 501, 626, 776
SsiI	CCGC	1 cut(s)	19
SspMI	CTAG	2 cut(s)	161, 341
SstI	GAGCTC	1 cut(s)	448
StyD4I	CCNGG	3 cut(s)	21, 750, 751
StyI	CCWWGG	3 cut(s)	368, 726, 784
TaaI	ACNGT	6 cut(s)	307, 316, 331, 736, 793, 873
TaqI	TCGA	1 cut(s)	77
TasI	AATT	4 cut(s)	190, 501, 626, 776
Tru1I	TTAA	2 cut(s)	509, 720
Tru9I	TTAA	2 cut(s)	509, 720
TscAI	CASTG	2 cut(s)	226, 878
TseI	GCWGC	2 cut(s)	55, 803
TspDTI	ATGAA	3 cut(s)	115, 166, 393
TspMI	CCCGGG	1 cut(s)	751
TspRI	CASTG	2 cut(s)	226, 878
Tth111I	GACNNNGTC	1 cut(s)	211
Vha464I	CTTAAG	1 cut(s)	508
VpaK11BI	GGWCC	5 cut(s)	213, 350, 618, 698, 853
XapI	RAATTY	1 cut(s)	190
XmaI	CCCGGG	1 cut(s)	751
XmiI	GTMKAC	1 cut(s)	364
XspI	CTAG	2 cut(s)	161, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.