Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Forward (+)

43172942 .. 43173877

Gene Structure 936 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG296200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTACACATTCATAGTCTACCGTATGGCTACTGCCACTTTCATCATTGCCCCTTTTGCTCTCATTTTTGACAGTAATTTAAGACCAAGGATGACATTCTCCATGGCCGCCAAGATATTGCAGCTTAGCCTCGACCCTGTGCTTACCCAGAACCTATACTATATAGGAATGAAGCACTCTACAGCCACTTTCTCATCTGCCATGTCCAACATTCTTCCTGCTTTTGCATTTTTAATGGCCTGGATTTTCCGGCTGGAGGAGGTCAGCTTTAAGAGTCTGCATGGCCTAGCAAAGGTCTTAGGAACTTTAATCACAGTTGGTGGAGCTATAATATTGACTCTAGTCAAAAGCCCTTCTTTGAGTTTACCATGGACCAAAGAGCAACATCCTCATCAACAATCGCAGAGTCACTCAGACGACAAGAACCTTGTTAAGGGTGCTTTATTCATGTCAGCAGCTTGTCTCTCCTGGTCTGTTTTCATTGTTTTGCTAGTAAGAATTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

168

Amino Acids

18.71

Weight (kDa)

9.72

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	2 - 104	2.3e-08	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	1 cut(s)	108
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	1 cut(s)	498
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	256, 292, 433
AjnI	CCWGG	2 cut(s)	239, 467
AluBI	AGCT	4 cut(s)	124, 267, 326, 458
AluI	AGCT	4 cut(s)	124, 267, 326, 458
Alw26I	GTCTC	1 cut(s)	467
AoxI	GGCC	3 cut(s)	105, 237, 283
ApeKI	GCWGC	2 cut(s)	121, 455
ApoI	RAATTY	1 cut(s)	498
AspS9I	GGNCC	1 cut(s)	372
AvaII	GGWCC	1 cut(s)	372
BbvI	GCAGC	2 cut(s)	133, 467
BciT130I	CCWGG	2 cut(s)	241, 469
BcoDI	GTCTC	1 cut(s)	467
BfaI	CTAG	4 cut(s)	287, 341, 491, 505
BfmI	CTRYAG	1 cut(s)	180
BisI	GCNGC	3 cut(s)	108, 122, 456
BlpI	GCTNAGC	1 cut(s)	125
BlsI	GCNGC	3 cut(s)	109, 123, 457
Bme1390I	CCNGG	2 cut(s)	241, 469
Bme18I	GGWCC	1 cut(s)	372
BmgT120I	GGNCC	1 cut(s)	372
BmrFI	CCNGG	2 cut(s)	241, 469
BoxI	GACNNNNGTC	1 cut(s)	341
BpmI	CTGGAG	1 cut(s)	275
Bpu1102I	GCTNAGC	1 cut(s)	125
BsaJI	CCNNGG	3 cut(s)	86, 102, 368
Bsc4I	CCNNNNNNNGG	3 cut(s)	256, 292, 433
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	2 cut(s)	241, 469
BseDI	CCNNGG	3 cut(s)	86, 102, 368
BseGI	GGATG	2 cut(s)	96, 385
BseLI	CCNNNNNNNGG	3 cut(s)	256, 292, 433
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	426
BseRI	GAGGAG	1 cut(s)	272
BseXI	GCAGC	2 cut(s)	133, 467
BshFI	GGCC	3 cut(s)	107, 239, 285
BsiSI	CCGG	1 cut(s)	250
BslI	CCNNNNNNNGG	3 cut(s)	256, 292, 433
BsmAI	GTCTC	1 cut(s)	467
BsnI	GGCC	3 cut(s)	107, 239, 285
Bsp1407I	TGTACA	1 cut(s)	3
Bsp1720I	GCTNAGC	1 cut(s)	125
Bsp19I	CCATGG	2 cut(s)	102, 368
BspACI	CCGC	1 cut(s)	108
BspANI	GGCC	3 cut(s)	107, 239, 285
BspCNI	CTCAG	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	45
BsrGI	TGTACA	1 cut(s)	3
BssECI	CCNNGG	3 cut(s)	86, 102, 368
BssT1I	CCWWGG	3 cut(s)	86, 102, 368
Bst2UI	CCWGG	2 cut(s)	241, 469
Bst4CI	ACNGT	3 cut(s)	23, 74, 316
BstAUI	TGTACA	1 cut(s)	3
BstDEI	CTNAG	3 cut(s)	125, 298, 412
BstDSI	CCRYGG	2 cut(s)	102, 368
BstENI	CCTNNNNNAGG	2 cut(s)	290, 431
BstF5I	GGATG	2 cut(s)	96, 385
BstMAI	GTCTC	1 cut(s)	467
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	2 cut(s)	241, 469
BstPAI	GACNNNNGTC	1 cut(s)	341
BstSCI	CCNGG	2 cut(s)	239, 467
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	133, 467
BsuRI	GGCC	3 cut(s)	107, 239, 285
BtgI	CCRYGG	2 cut(s)	102, 368
BtsCI	GGATG	2 cut(s)	96, 385
Cfr13I	GGNCC	1 cut(s)	372
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	5 cut(s)	103, 202, 281, 369, 448
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	3 cut(s)	125, 298, 412
EaeI	YGGCCR	1 cut(s)	105
Eco130I	CCWWGG	3 cut(s)	86, 102, 368
Eco47I	GGWCC	1 cut(s)	372
EcoNI	CCTNNNNNAGG	2 cut(s)	290, 431
EcoRI	GAATTC	1 cut(s)	498
EcoRII	CCWGG	2 cut(s)	239, 467
EcoT14I	CCWWGG	3 cut(s)	86, 102, 368
ErhI	CCWWGG	3 cut(s)	86, 102, 368
FaeI	CATG	5 cut(s)	106, 205, 284, 372, 451
FalI	AAGNNNNNCTT	2 cut(s)	340, 372
FatI	CATG	5 cut(s)	102, 201, 280, 368, 447
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	3 cut(s)	108, 122, 456
FokI	GGATG	2 cut(s)	103, 372
Fsp4HI	GCNGC	3 cut(s)	108, 122, 456
FspBI	CTAG	4 cut(s)	287, 341, 491, 505
GluI	GCNGC	3 cut(s)	108, 122, 456
GsuI	CTGGAG	1 cut(s)	275
HaeIII	GGCC	3 cut(s)	107, 239, 285
HapII	CCGG	1 cut(s)	250
Hin1II	CATG	5 cut(s)	106, 205, 284, 372, 451
HinfI	GANTC	3 cut(s)	274, 337, 406
HpaII	CCGG	1 cut(s)	250
Hpy166II	GTNNAC	3 cut(s)	6, 19, 365
Hpy188I	TCNGA	1 cut(s)	415
Hpy8I	GTNNAC	3 cut(s)	6, 19, 365
HpyAV	CCTTC	1 cut(s)	363
HpyCH4III	ACNGT	3 cut(s)	23, 74, 316
HpyCH4V	TGCA	3 cut(s)	121, 227, 280
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	3 cut(s)	125, 298, 412
Hsp92II	CATG	5 cut(s)	106, 205, 284, 372, 451
LmnI	GCTCC	1 cut(s)	323
LpnPI	CCDG	9 cut(s)	150, 161, 226, 231, 239, 253, 263, 454, 481
Lsp1109I	GCAGC	2 cut(s)	133, 467
MaeI	CTAG	4 cut(s)	287, 341, 491, 505
MaeIII	GTNAC	1 cut(s)	407
MboII	GAAGA	1 cut(s)	206
MluCI	AATT	2 cut(s)	76, 498
MlyI	GAGTC	3 cut(s)	283, 331, 415
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	4 cut(s)	140, 250, 253, 399
MseI	TTAA	5 cut(s)	80, 233, 270, 308, 432
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	2 cut(s)	241, 469
MvaI	CCWGG	2 cut(s)	241, 469
MwoI	GCNNNNNNNGC	1 cut(s)	56
NcoI	CCATGG	2 cut(s)	102, 368
NlaIII	CATG	5 cut(s)	106, 205, 284, 372, 451
NmuCI	GTSAC	1 cut(s)	407
PkrI	GCNGC	3 cut(s)	109, 123, 457
PleI	GAGTC	3 cut(s)	282, 331, 414
PpsI	GAGTC	3 cut(s)	282, 331, 414
PshAI	GACNNNNGTC	1 cut(s)	341
Psp6I	CCWGG	2 cut(s)	239, 467
PspGI	CCWGG	2 cut(s)	239, 467
PspPI	GGNCC	1 cut(s)	372
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	5 cut(s)	80, 233, 270, 308, 432
SatI	GCNGC	3 cut(s)	108, 122, 456
Sau96I	GGNCC	1 cut(s)	372
SchI	GAGTC	3 cut(s)	283, 331, 415
ScrFI	CCNGG	2 cut(s)	241, 469
SetI	ASST	8 cut(s)	126, 156, 264, 269, 297, 328, 429, 460
SfcI	CTRYAG	1 cut(s)	180
SinI	GGWCC	1 cut(s)	372
Sse9I	AATT	2 cut(s)	76, 498
SsiI	CCGC	1 cut(s)	108
SspI	AATATT	1 cut(s)	333
SspMI	CTAG	4 cut(s)	287, 341, 491, 505
StyD4I	CCNGG	2 cut(s)	239, 467
StyI	CCWWGG	3 cut(s)	86, 102, 368
TaaI	ACNGT	3 cut(s)	23, 74, 316
TaqI	TCGA	1 cut(s)	132
TasI	AATT	2 cut(s)	76, 498
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	110
Tru1I	TTAA	5 cut(s)	80, 233, 270, 308, 432
Tru9I	TTAA	5 cut(s)	80, 233, 270, 308, 432
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	2 cut(s)	121, 455
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	4 cut(s)	31, 185, 436, 469
VpaK11BI	GGWCC	1 cut(s)	372
XagI	CCTNNNNNAGG	2 cut(s)	290, 431
XapI	RAATTY	1 cut(s)	498
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	4 cut(s)	287, 341, 491, 505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.