Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005795.1

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Forward (+)

33181 .. 34633

Gene Structure 1453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005795.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

atgagttccatgactacaattcttgtcattgcagtatgctttgttcaagccttgtatgcaggcctgtccatcatttcaaaccttgcactaaggcagggaatgagccactacacctttgtagtgtatcgtatggccatagcaacggccttgggaagtccactggcatggtatctagagagattttctaggcctgcaatgaccatcaaggtcatgacaaagatcatgctactaagcatgtttgaccctgtactggtccaaaacttgtactatgtgggcatggagaactccaatgccacattcacatcggcaatgtgcaacatgctgccggtgtttgcatttgtcatggcctggattttcaggttggagaatgtggactacagacacccgaggggattggccaaggttctaggaaccttggtttcggtggtaggagcaatcctccttaccacggtcaaggggccttctctcaagttgccatgggcaaggaaccatgagaaaaatcattcttctggtgaagtcaagggtgctatcttcctaacactagcctgcttctgctggtcctgtttcatagtcctacaagccaatgtactcaagtcctacccctgcaagctctctctcaccgctttgatttgcttctggggtatggtggaaggagcagtggtggctattgtggttgaacgggaaaattcagaagcatggtccatacacttcgacatcaagttgctcgcagctgtttatggggctcttctatcgggggctgtatattatgtcatggggctggttgtgacgaagaagggaccagttttctactctgcctttaaccccttgggcaccctgcttgtggcgatcttgggatcattttttctggcagaacaattgtatactggaattctcatcggagctgtaaccattgtgggaggtctctatcttgttctttggggaaaagcaagagatcagcctccctctttgaatgccaatgtggaagaaccaactggaaccccagcaatagacgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

338

Amino Acids

36.95

Weight (kDa)

8.76

Isoelectric Point (pI)

26.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	830
AccI	GTMKAC	1 cut(s)	881
AciI	CCGC	1 cut(s)	621
AclWI	GGATC	1 cut(s)	862
AcoI	YGGCCR	2 cut(s)	132, 396
AcsI	RAATTY	2 cut(s)	685, 888
AfaI	GTAC	3 cut(s)	249, 266, 588
AfiI	CCNNNNNNNGG	3 cut(s)	250, 448, 841
AgsI	TTSAA	4 cut(s)	47, 78, 677, 970
AjnI	CCWGG	1 cut(s)	347
AjuI	GAANNNNNNNTTGG	2 cut(s)	281, 313
AluBI	AGCT	3 cut(s)	610, 731, 902
AluI	AGCT	3 cut(s)	610, 731, 902
Alw26I	GTCTC	1 cut(s)	926
AlwI	GGATC	1 cut(s)	862
Ama87I	CYCGRG	1 cut(s)	385
AoxI	GGCC	7 cut(s)	61, 132, 144, 188, 345, 396, 458
ApeKI	GCWGC	2 cut(s)	322, 728
ApoI	RAATTY	2 cut(s)	685, 888
AspS9I	GGNCC	5 cut(s)	253, 458, 558, 699, 797
AsuHPI	GGTGA	2 cut(s)	524, 610
AvaI	CYCGRG	1 cut(s)	385
AvaII	GGWCC	4 cut(s)	253, 558, 699, 797
BaeGI	GKGCMC	1 cut(s)	833
BalI	TGGCCA	2 cut(s)	134, 398
BanI	GGYRCC	1 cut(s)	830
BanII	GRGCYC	1 cut(s)	745
BbvI	GCAGC	2 cut(s)	309, 740
BccI	CCATC	2 cut(s)	77, 209
BceAI	ACGGC	1 cut(s)	159
BciT130I	CCWGG	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	926
BfaI	CTAG	4 cut(s)	173, 186, 407, 542
BfmI	CTRYAG	1 cut(s)	376
BisI	GCNGC	2 cut(s)	323, 729
BlsI	GCNGC	2 cut(s)	324, 730
Bme1390I	CCNGG	1 cut(s)	349
Bme18I	GGWCC	4 cut(s)	253, 558, 699, 797
BmeT110I	CYCGRG	1 cut(s)	385
BmgT120I	GGNCC	5 cut(s)	253, 458, 558, 699, 797
BmiI	GGNNCC	6 cut(s)	412, 459, 488, 798, 832, 997
BmrFI	CCNGG	1 cut(s)	349
BplI	GAGNNNNNCTC	2 cut(s)	423, 455
BpuEI	CTTGAG	2 cut(s)	452, 575
BsaI	GGTCTC	1 cut(s)	926
BsaJI	CCNNGG	7 cut(s)	147, 386, 399, 414, 447, 476, 825
BsaXI	ACNNNNNCTCC	2 cut(s)	645, 675
Bsc4I	CCNNNNNNNGG	3 cut(s)	250, 448, 841
Bse118I	RCCGGY	1 cut(s)	325
Bse1I	ACTGG	5 cut(s)	165, 255, 800, 889, 997
Bse3DI	GCAATG	3 cut(s)	27, 201, 315
BseBI	CCWGG	1 cut(s)	349
BseDI	CCNNGG	7 cut(s)	147, 386, 399, 414, 447, 476, 825
BseLI	CCNNNNNNNGG	3 cut(s)	250, 448, 841
BseMI	GCAATG	3 cut(s)	27, 201, 315
BseNI	ACTGG	5 cut(s)	165, 255, 800, 889, 997
BseSI	GKGCMC	1 cut(s)	833
BseXI	GCAGC	2 cut(s)	309, 740
BseYI	CCCAGC	1 cut(s)	1000
BshFI	GGCC	7 cut(s)	63, 134, 146, 190, 347, 398, 460
BshNI	GGYRCC	1 cut(s)	830
BsiHKCI	CYCGRG	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	326
BslFI	GGGAC	1 cut(s)	810
BslI	CCNNNNNNNGG	3 cut(s)	250, 448, 841
BsmAI	GTCTC	1 cut(s)	926
BsmFI	GGGAC	1 cut(s)	810
BsmI	GAATGC	1 cut(s)	976
BsnI	GGCC	7 cut(s)	63, 134, 146, 190, 347, 398, 460
Bso31I	GGTCTC	1 cut(s)	926
BsoBI	CYCGRG	1 cut(s)	385
Bsp1286I	GDGCHC	2 cut(s)	745, 833
Bsp143I	GATC	4 cut(s)	219, 846, 854, 952
Bsp19I	CCATGG	1 cut(s)	476
BspACI	CCGC	1 cut(s)	621
BspANI	GGCC	7 cut(s)	63, 134, 146, 190, 347, 398, 460
BspHI	TCATGA	1 cut(s)	210
BspLI	GGNNCC	6 cut(s)	412, 459, 488, 798, 832, 997
BspPI	GGATC	1 cut(s)	862
BspQI	GCTCTTC	1 cut(s)	750
BspT107I	GGYRCC	1 cut(s)	830
BspTNI	GGTCTC	1 cut(s)	926
BsrDI	GCAATG	3 cut(s)	27, 201, 315
BsrFI	RCCGGY	1 cut(s)	325
BsrI	ACTGG	5 cut(s)	165, 255, 800, 889, 997
BssAI	RCCGGY	1 cut(s)	325
BssECI	CCNNGG	7 cut(s)	147, 386, 399, 414, 447, 476, 825
BssMI	GATC	4 cut(s)	219, 846, 854, 952
BssNAI	GTATAC	1 cut(s)	882
BssT1I	CCWWGG	5 cut(s)	147, 399, 414, 476, 825
Bst1107I	GTATAC	1 cut(s)	882
Bst2UI	CCWGG	1 cut(s)	349
Bst4CI	ACNGT	1 cut(s)	451
Bst6I	CTCTTC	1 cut(s)	750
BstC8I	GCNNGC	5 cut(s)	61, 192, 547, 608, 726
BstDEI	CTNAG	2 cut(s)	89, 230
BstDSI	CCRYGG	2 cut(s)	447, 476
BstKTI	GATC	4 cut(s)	222, 849, 857, 955
BstMAI	GTCTC	1 cut(s)	926
BstMBI	GATC	4 cut(s)	219, 846, 854, 952
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 662
BstNI	CCWGG	1 cut(s)	349
BstNSI	RCATGY	2 cut(s)	238, 322
BstSCI	CCNGG	1 cut(s)	347
BstSFI	CTRYAG	1 cut(s)	376
BstSLI	GKGCMC	1 cut(s)	833
BstV1I	GCAGC	2 cut(s)	309, 740
BstXI	CCANNNNNNTGG	1 cut(s)	165
BstZ17I	GTATAC	1 cut(s)	882
BsuRI	GGCC	7 cut(s)	63, 134, 146, 190, 347, 398, 460
BtgI	CCRYGG	2 cut(s)	447, 476
BtsI	GCAGTG	1 cut(s)	663
BtsIMutI	CAGTG	2 cut(s)	158, 663
Cac8I	GCNNGC	5 cut(s)	61, 192, 547, 608, 726
CciI	TCATGA	1 cut(s)	210
Cfr10I	RCCGGY	1 cut(s)	325
Cfr13I	GGNCC	5 cut(s)	253, 458, 558, 699, 797
Csp6I	GTAC	3 cut(s)	248, 265, 587
CviQI	GTAC	3 cut(s)	248, 265, 587
DdeI	CTNAG	2 cut(s)	89, 230
DpnI	GATC	4 cut(s)	221, 848, 856, 954
DpnII	GATC	4 cut(s)	219, 846, 854, 952
EaeI	YGGCCR	2 cut(s)	132, 396
Eam1104I	CTCTTC	1 cut(s)	750
EarI	CTCTTC	1 cut(s)	750
Eco130I	CCWWGG	5 cut(s)	147, 399, 414, 476, 825
Eco147I	AGGCCT	2 cut(s)	63, 190
Eco24I	GRGCYC	1 cut(s)	745
Eco31I	GGTCTC	1 cut(s)	926
Eco47I	GGWCC	4 cut(s)	253, 558, 699, 797
Eco88I	CYCGRG	1 cut(s)	385
EcoO109I	RGGNCCY	1 cut(s)	458
EcoRI	GAATTC	1 cut(s)	888
EcoRII	CCWGG	1 cut(s)	347
EcoT14I	CCWWGG	5 cut(s)	147, 399, 414, 476, 825
EcoT38I	GRGCYC	1 cut(s)	745
ErhI	CCWWGG	5 cut(s)	147, 399, 414, 476, 825
FaqI	GGGAC	1 cut(s)	810
FblI	GTMKAC	1 cut(s)	881
Fnu4HI	GCNGC	2 cut(s)	323, 729
FriOI	GRGCYC	1 cut(s)	745
Fsp4HI	GCNGC	2 cut(s)	323, 729
FspBI	CTAG	4 cut(s)	173, 186, 407, 542
GluI	GCNGC	2 cut(s)	323, 729
GsaI	CCCAGC	1 cut(s)	1004
HaeIII	GGCC	7 cut(s)	63, 134, 146, 190, 347, 398, 460
HapII	CCGG	1 cut(s)	326
HpaII	CCGG	1 cut(s)	326
HphI	GGTGA	2 cut(s)	524, 610
Hpy166II	GTNNAC	3 cut(s)	158, 373, 882
Hpy188I	TCNGA	2 cut(s)	691, 899
Hpy188III	TCNNGA	2 cut(s)	173, 211
Hpy8I	GTNNAC	3 cut(s)	158, 373, 882
HpyAV	CCTTC	3 cut(s)	471, 644, 787
HpyCH4III	ACNGT	1 cut(s)	451
HpyCH4V	TGCA	7 cut(s)	32, 59, 86, 194, 315, 335, 606
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 662
HpyF3I	CTNAG	2 cut(s)	89, 230
Kzo9I	GATC	4 cut(s)	219, 846, 854, 952
LguI	GCTCTTC	1 cut(s)	750
LmnI	GCTCC	3 cut(s)	431, 653, 899
Lsp1109I	GCAGC	2 cut(s)	309, 740
MaeI	CTAG	4 cut(s)	173, 186, 407, 542
MaeIII	GTNAC	2 cut(s)	784, 904
MalI	GATC	4 cut(s)	221, 848, 856, 954
MboI	GATC	4 cut(s)	219, 846, 854, 952
MboII	GAAGA	5 cut(s)	498, 523, 737, 802, 995
MfeI	CAATTG	1 cut(s)	875
MhlI	GDGCHC	2 cut(s)	745, 833
MlsI	TGGCCA	2 cut(s)	134, 398
MluCI	AATT	4 cut(s)	18, 685, 875, 888
MluNI	TGGCCA	2 cut(s)	134, 398
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	5 cut(s)	381, 449, 911, 969, 973
Mox20I	TGGCCA	2 cut(s)	134, 398
MscI	TGGCCA	2 cut(s)	134, 398
MseI	TTAA	2 cut(s)	819, 1015
MslI	CAYNNNNRTG	1 cut(s)	163
Msp20I	TGGCCA	2 cut(s)	134, 398
MspA1I	CMGCKG	1 cut(s)	731
MspI	CCGG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	349
MunI	CAATTG	1 cut(s)	875
Mva1269I	GAATGC	1 cut(s)	976
MvaI	CCWGG	1 cut(s)	349
MwoI	GCNNNNNNNGC	2 cut(s)	56, 662
NcoI	CCATGG	1 cut(s)	476
NdeII	GATC	4 cut(s)	219, 846, 854, 952
NlaIV	GGNNCC	6 cut(s)	412, 459, 488, 798, 832, 997
NmuCI	GTSAC	1 cut(s)	784
NspI	RCATGY	2 cut(s)	238, 322
PagI	TCATGA	1 cut(s)	210
PceI	AGGCCT	2 cut(s)	63, 190
PciSI	GCTCTTC	1 cut(s)	750
PctI	GAATGC	1 cut(s)	976
PkrI	GCNGC	2 cut(s)	324, 730
Psp6I	CCWGG	1 cut(s)	347
PspFI	CCCAGC	1 cut(s)	1000
PspGI	CCWGG	1 cut(s)	347
PspN4I	GGNNCC	6 cut(s)	412, 459, 488, 798, 832, 997
PspPI	GGNCC	5 cut(s)	253, 458, 558, 699, 797
PsrI	GAACNNNNNNTAC	2 cut(s)	27, 59
PvuII	CAGCTG	1 cut(s)	731
RsaI	GTAC	3 cut(s)	249, 266, 588
RsaNI	GTAC	3 cut(s)	248, 265, 587
RseI	CAYNNNNRTG	1 cut(s)	163
SapI	GCTCTTC	1 cut(s)	750
SaqAI	TTAA	2 cut(s)	819, 1015
SatI	GCNGC	2 cut(s)	323, 729
Sau3AI	GATC	4 cut(s)	219, 846, 854, 952
Sau96I	GGNCC	5 cut(s)	253, 458, 558, 699, 797
ScrFI	CCNGG	1 cut(s)	349
SduI	GDGCHC	2 cut(s)	745, 833
SfcI	CTRYAG	1 cut(s)	376
SinI	GGWCC	4 cut(s)	253, 558, 699, 797
SmiMI	CAYNNNNRTG	1 cut(s)	163
SmlI	CTYRAG	2 cut(s)	467, 590
SmoI	CTYRAG	2 cut(s)	467, 590
Sse9I	AATT	4 cut(s)	18, 685, 875, 888
SseBI	AGGCCT	2 cut(s)	63, 190
SsiI	CCGC	1 cut(s)	621
SspMI	CTAG	4 cut(s)	173, 186, 407, 542
StuI	AGGCCT	2 cut(s)	63, 190
StyD4I	CCNGG	1 cut(s)	347
StyI	CCWWGG	5 cut(s)	147, 399, 414, 476, 825
TaaI	ACNGT	1 cut(s)	451
TaqI	TCGA	1 cut(s)	711
TasI	AATT	4 cut(s)	18, 685, 875, 888
TatI	WGTACW	3 cut(s)	247, 264, 586
Tru1I	TTAA	2 cut(s)	819, 1015
Tru9I	TTAA	2 cut(s)	819, 1015
TscAI	CASTG	2 cut(s)	165, 663
TseFI	GTSAC	1 cut(s)	784
TseI	GCWGC	2 cut(s)	322, 728
Tsp45I	GTSAC	1 cut(s)	784
TspDTI	ATGAA	1 cut(s)	556
TspRI	CASTG	2 cut(s)	165, 663
VpaK11BI	GGWCC	4 cut(s)	253, 558, 699, 797
XapI	RAATTY	2 cut(s)	685, 888
XbaI	TCTAGA	1 cut(s)	172
XceI	RCATGY	2 cut(s)	238, 322
XmiI	GTMKAC	1 cut(s)	881
XspI	CTAG	4 cut(s)	173, 186, 407, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.