RchiOBHm_Chr7g0232741

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
56974974 .. 56977350
2377 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20862

Sequence Viewer

Length: 882 bp
ATGGGGTTGATCCGCCGGGCAAAGCTTGTGTTAGCTGTGATTTTGGTGCAGCTCAGGTATGCTGGGCTTTCGATAATCTCAATGTTTGCTCTAAAGAAGGGAATGAGTCCTTCCACATTCATCGTGTATCGAATGGCCATTGCCACTATTGTTCTAGCTCCATTTGCATTCATTTTGGAGAGGAACAGGGCCGGCCCTGAGGGCTGCCATGTGAGGCAGCCGTCTCAGGCCACCAGTTCTCGGGGGCCTCCGATTTGTCTACTTAGCCACACAAATCTCATGACCGACCCTGGAGAGGAATTCAAGACCTCCGATGACTTGGTCTCCATCACTGCAAAGATAATGTTGCTGAGCCTTTTCGACCCTGTGCTTGACCATAACCTGTACTACATGGGAATGAAGAATTCGAGTGCAACGTTCACTTCTGCAATGTTTGAGAAGGTTAGTCTTAAGAAACTACACAGCATAGCAAAGGTGATGGGGACGGTCATCACAGTCGGGGGAGCAATTGTCTTGACTCTAGTTAGAGGTCCCTCTTTGTGTCTACCATGGGCCAATGAAGAAGAAATAAATCCTCATCAATCTGCGCAATATTATTCGGGTCAAAGAGACCCTGTGAAAGGAGCTCTATTTATCTCAGGAGCTTGCTTCTGCTGGTCTTGGTTTGTCATTTTGCAAGCAATTATCTTAAGATCCTACCCTTGTCAGCTCTCTCTCACAGCAATGATATGCTTTTGGGGTATGGTGGAAGGAGCAATACTGGCTTTTGTATTTGAAAGGGGACATAGTGGAGTTTGGTCCATACAATTCAACATCAAACTTGTAGCAGCAATATTTTATGGGGTAGGTAATCCCAAAAGTTTCAATTGTATGTTTAAATAG

Protein Analysis

293

Amino Acids

32.31

Weight (kDa)

9.3

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000617)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39510
fragaria_vesca FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 588
AccI GTMKAC 2 cut(s) 259, 544
AciI CCGC 1 cut(s) 13
AclI AACGTT 1 cut(s) 416
AclWI GGATC 2 cut(s) 4, 687
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 2 cut(s) 299, 403
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 3 cut(s) 240, 295, 620
AflII CTTAAG 2 cut(s) 449, 688
AgsI TTSAA 4 cut(s) 304, 776, 811, 865
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 7 cut(s) 25, 35, 52, 158, 626, 644, 709
AluI AGCT 7 cut(s) 25, 35, 52, 158, 626, 644, 709
Alw21I GWGCWC 1 cut(s) 628
Alw26I GTCTC 3 cut(s) 228, 328, 603
AlwI GGATC 2 cut(s) 4, 687
Ama87I CYCGRG 1 cut(s) 240
AoxI GGCC 6 cut(s) 135, 189, 193, 228, 245, 552
ApeKI GCWGC 4 cut(s) 49, 204, 217, 827
ApoI RAATTY 2 cut(s) 299, 403
AspLEI GCGC 1 cut(s) 589
AspS9I GGNCC 6 cut(s) 189, 194, 245, 530, 552, 798
AsuC2I CCSGG 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 487
AvaI CYCGRG 1 cut(s) 240
AvaII GGWCC 2 cut(s) 530, 798
AxyI CCTNAGG 1 cut(s) 198
BalI TGGCCA 1 cut(s) 137
BanII GRGCYC 1 cut(s) 628
BarI GAAGNNNNNNTAC 2 cut(s) 741, 773
Bbv12I GWGCWC 1 cut(s) 628
BbvI GCAGC 4 cut(s) 61, 191, 229, 839
BccI CCATC 2 cut(s) 335, 472
BceAI ACGGC 1 cut(s) 205
BciT130I CCWGG 1 cut(s) 291
BcnI CCSGG 1 cut(s) 17
BcoDI GTCTC 3 cut(s) 228, 328, 603
BfaI CTAG 2 cut(s) 155, 521
BfrI CTTAAG 2 cut(s) 449, 688
BglI GCCNNNNNGGC 1 cut(s) 201
BisI GCNGC 4 cut(s) 50, 205, 218, 828
BlpI GCTNAGC 1 cut(s) 350
BlsI GCNGC 4 cut(s) 51, 206, 219, 829
Bme1390I CCNGG 2 cut(s) 17, 291
Bme18I GGWCC 2 cut(s) 530, 798
BmeT110I CYCGRG 1 cut(s) 240
BmgT120I GGNCC 6 cut(s) 189, 194, 245, 530, 552, 798
BmiI GGNNCC 2 cut(s) 246, 532
BmrFI CCNGG 2 cut(s) 17, 291
BpmI CTGGAG 1 cut(s) 312
Bpu10I CCTNAGC 1 cut(s) 53
Bpu1102I GCTNAGC 1 cut(s) 350
BpuMI CCSGG 1 cut(s) 17
BsaI GGTCTC 2 cut(s) 328, 603
BsaJI CCNNGG 2 cut(s) 289, 548
BsaXI ACNNNNNCTCC 4 cut(s) 308, 338, 495, 525
Bsc4I CCNNNNNNNGG 3 cut(s) 240, 295, 620
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 2 cut(s) 234, 765
Bse21I CCTNAGG 1 cut(s) 198
Bse3DI GCAATG 3 cut(s) 138, 435, 729
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 289, 548
BseLI CCNNNNNNNGG 3 cut(s) 240, 295, 620
BseMI GCAATG 3 cut(s) 138, 435, 729
BseMII CTCAG 5 cut(s) 67, 189, 239, 341, 651
BseNI ACTGG 2 cut(s) 234, 765
BseXI GCAGC 4 cut(s) 61, 191, 229, 839
BseYI CCCAGC 1 cut(s) 62
BsgI GTGCAG 1 cut(s) 68
BshFI GGCC 6 cut(s) 137, 191, 195, 230, 247, 554
BsiHKAI GWGCWC 1 cut(s) 628
BsiHKCI CYCGRG 1 cut(s) 240
BsiSI CCGG 2 cut(s) 16, 192
BslFI GGGAC 3 cut(s) 496, 516, 795
BslI CCNNNNNNNGG 3 cut(s) 240, 295, 620
BsmAI GTCTC 3 cut(s) 228, 328, 603
BsmBI CGTCTC 1 cut(s) 228
BsmFI GGGAC 3 cut(s) 496, 516, 795
BsmI GAATGC 1 cut(s) 167
BsnI GGCC 6 cut(s) 137, 191, 195, 230, 247, 554
Bso31I GGTCTC 2 cut(s) 328, 603
BsoBI CYCGRG 1 cut(s) 240
Bsp1286I GDGCHC 1 cut(s) 628
Bsp143I GATC 2 cut(s) 9, 692
Bsp1720I GCTNAGC 1 cut(s) 350
Bsp19I CCATGG 1 cut(s) 548
BspACI CCGC 1 cut(s) 13
BspANI GGCC 6 cut(s) 137, 191, 195, 230, 247, 554
BspCNI CTCAG 5 cut(s) 66, 190, 238, 342, 650
BspHI TCATGA 1 cut(s) 279
BspLI GGNNCC 2 cut(s) 246, 532
BspPI GGATC 2 cut(s) 4, 687
BspTI CTTAAG 2 cut(s) 449, 688
BspTNI GGTCTC 2 cut(s) 328, 603
BsrDI GCAATG 3 cut(s) 138, 435, 729
BsrFI RCCGGY 1 cut(s) 191
BsrI ACTGG 2 cut(s) 234, 765
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 2 cut(s) 289, 548
BssMI GATC 2 cut(s) 9, 692
BssT1I CCWWGG 1 cut(s) 548
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 2 cut(s) 487, 496
BstAFI CTTAAG 2 cut(s) 449, 688
BstC8I GCNNGC 3 cut(s) 193, 646, 678
BstDEI CTNAG 6 cut(s) 53, 198, 225, 263, 350, 637
BstDSI CCRYGG 1 cut(s) 548
BstENI CCTNNNNNAGG 1 cut(s) 618
BstHHI GCGC 1 cut(s) 589
BstKTI GATC 2 cut(s) 12, 695
BstMAI GTCTC 3 cut(s) 228, 328, 603
BstMBI GATC 2 cut(s) 9, 692
BstMWI GCNNNNNNNGC 3 cut(s) 164, 201, 761
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 2 cut(s) 15, 289
BstV1I GCAGC 4 cut(s) 61, 191, 229, 839
BstX2I RGATCY 1 cut(s) 692
BstYI RGATCY 1 cut(s) 692
Bsu36I CCTNAGG 1 cut(s) 198
BsuRI GGCC 6 cut(s) 137, 191, 195, 230, 247, 554
BtgI CCRYGG 1 cut(s) 548
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 1 cut(s) 330
Cac8I GCNNGC 3 cut(s) 193, 646, 678
CciI TCATGA 1 cut(s) 279
CfoI GCGC 1 cut(s) 589
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 6 cut(s) 189, 194, 245, 530, 552, 798
Csp6I GTAC 1 cut(s) 385
CviAII CATG 4 cut(s) 209, 280, 391, 549
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 6 cut(s) 53, 198, 225, 263, 350, 637
DpnI GATC 2 cut(s) 11, 694
DpnII GATC 2 cut(s) 9, 692
DraI TTTAAA 1 cut(s) 877
EaeI YGGCCR 1 cut(s) 135
Ecl136II GAGCTC 1 cut(s) 626
Eco130I CCWWGG 1 cut(s) 548
Eco24I GRGCYC 1 cut(s) 628
Eco31I GGTCTC 2 cut(s) 328, 603
Eco47I GGWCC 2 cut(s) 530, 798
Eco53kI GAGCTC 1 cut(s) 626
Eco81I CCTNAGG 1 cut(s) 198
Eco88I CYCGRG 1 cut(s) 240
EcoICRI GAGCTC 1 cut(s) 626
EcoNI CCTNNNNNAGG 1 cut(s) 618
EcoO109I RGGNCCY 2 cut(s) 245, 530
EcoRI GAATTC 2 cut(s) 299, 403
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 548
EcoT38I GRGCYC 1 cut(s) 628
ErhI CCWWGG 1 cut(s) 548
Esp3I CGTCTC 1 cut(s) 228
FaeI CATG 4 cut(s) 212, 283, 394, 552
FaqI GGGAC 3 cut(s) 496, 516, 795
FatI CATG 4 cut(s) 208, 279, 390, 548
FblI GTMKAC 2 cut(s) 259, 544
Fnu4HI GCNGC 4 cut(s) 50, 205, 218, 828
FriOI GRGCYC 1 cut(s) 628
FseI GGCCGGCC 1 cut(s) 195
Fsp4HI GCNGC 4 cut(s) 50, 205, 218, 828
FspBI CTAG 2 cut(s) 155, 521
FspI TGCGCA 1 cut(s) 588
GlaI GCGC 1 cut(s) 588
GluI GCNGC 4 cut(s) 50, 205, 218, 828
GsaI CCCAGC 1 cut(s) 66
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 6 cut(s) 137, 191, 195, 230, 247, 554
HapII CCGG 2 cut(s) 16, 192
HhaI GCGC 1 cut(s) 589
Hin1II CATG 4 cut(s) 212, 283, 394, 552
Hin6I GCGC 1 cut(s) 587
HinP1I GCGC 1 cut(s) 587
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 2 cut(s) 106, 517
HpaII CCGG 2 cut(s) 16, 192
HphI GGTGA 1 cut(s) 487
Hpy166II GTNNAC 3 cut(s) 260, 420, 545
Hpy188I TCNGA 2 cut(s) 252, 313
Hpy188III TCNNGA 4 cut(s) 280, 304, 514, 639
Hpy8I GTNNAC 3 cut(s) 260, 420, 545
HpyAV CCTTC 4 cut(s) 91, 120, 433, 743
HpyCH4III ACNGT 2 cut(s) 487, 496
HpyCH4IV ACGT 1 cut(s) 416
HpyCH4V TGCA 6 cut(s) 49, 167, 335, 413, 428, 676
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 201, 761
HpyF3I CTNAG 6 cut(s) 53, 198, 225, 263, 350, 637
HpySE526I ACGT 1 cut(s) 416
Hsp92II CATG 4 cut(s) 212, 283, 394, 552
HspAI GCGC 1 cut(s) 587
KroI GCCGGC 1 cut(s) 191
KroNI GCCGGC 1 cut(s) 193
Kzo9I GATC 2 cut(s) 9, 692
LmnI GCTCC 5 cut(s) 163, 503, 623, 641, 752
Lsp1109I GCAGC 4 cut(s) 61, 191, 229, 839
MaeI CTAG 2 cut(s) 155, 521
MaeII ACGT 1 cut(s) 416
MalI GATC 2 cut(s) 11, 694
MboI GATC 2 cut(s) 9, 692
MboII GAAGA 3 cut(s) 412, 572, 575
MfeI CAATTG 2 cut(s) 507, 865
MflI RGATCY 1 cut(s) 692
MhlI GDGCHC 1 cut(s) 628
MlsI TGGCCA 1 cut(s) 137
MluCI AATT 6 cut(s) 299, 403, 507, 681, 806, 865
MluNI TGGCCA 1 cut(s) 137
MlyI GAGTC 2 cut(s) 115, 511
MnlI CCTC 9 cut(s) 174, 193, 207, 258, 289, 319, 521, 544, 585
Mox20I TGGCCA 1 cut(s) 137
MroNI GCCGGC 1 cut(s) 191
MscI TGGCCA 1 cut(s) 137
MseI TTAA 3 cut(s) 450, 689, 876
MslI CAYNNNNRTG 2 cut(s) 395, 722
Msp20I TGGCCA 1 cut(s) 137
MspCI CTTAAG 2 cut(s) 449, 688
MspI CCGG 2 cut(s) 16, 192
MspR9I CCNGG 2 cut(s) 17, 291
MunI CAATTG 2 cut(s) 507, 865
Mva1269I GAATGC 1 cut(s) 167
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 3 cut(s) 164, 201, 761
NaeI GCCGGC 1 cut(s) 193
NciI CCSGG 1 cut(s) 17
NcoI CCATGG 1 cut(s) 548
NdeII GATC 2 cut(s) 9, 692
NgoMIV GCCGGC 1 cut(s) 191
NlaIII CATG 4 cut(s) 212, 283, 394, 552
NlaIV GGNNCC 2 cut(s) 246, 532
NsbI TGCGCA 1 cut(s) 588
PagI TCATGA 1 cut(s) 279
PcsI WCGNNNNNNNCGW 1 cut(s) 413
PctI GAATGC 1 cut(s) 167
PdiI GCCGGC 1 cut(s) 193
PflFI GACNNNGTC 1 cut(s) 320
PkrI GCNGC 4 cut(s) 51, 206, 219, 829
PleI GAGTC 2 cut(s) 114, 511
PpsI GAGTC 2 cut(s) 114, 511
PpuMI RGGWCCY 1 cut(s) 530
Psp124BI GAGCTC 1 cut(s) 628
Psp1406I AACGTT 1 cut(s) 416
Psp5II RGGWCCY 1 cut(s) 530
Psp6I CCWGG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 62
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 246, 532
PspPI GGNCC 6 cut(s) 189, 194, 245, 530, 552, 798
PspPPI RGGWCCY 1 cut(s) 530
PsuI RGATCY 1 cut(s) 692
PsyI GACNNNGTC 1 cut(s) 320
RigI GGCCGGCC 1 cut(s) 195
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 2 cut(s) 395, 722
SacI GAGCTC 1 cut(s) 628
SaqAI TTAA 3 cut(s) 450, 689, 876
SatI GCNGC 4 cut(s) 50, 205, 218, 828
Sau3AI GATC 2 cut(s) 9, 692
Sau96I GGNCC 6 cut(s) 189, 194, 245, 530, 552, 798
SchI GAGTC 2 cut(s) 115, 511
ScrFI CCNGG 2 cut(s) 17, 291
SduI GDGCHC 1 cut(s) 628
SinI GGWCC 2 cut(s) 530, 798
SmiMI CAYNNNNRTG 2 cut(s) 395, 722
SmlI CTYRAG 2 cut(s) 449, 688
SmoI CTYRAG 2 cut(s) 449, 688
Sse9I AATT 6 cut(s) 299, 403, 507, 681, 806, 865
SsiI CCGC 1 cut(s) 13
SspI AATATT 2 cut(s) 593, 834
SspMI CTAG 2 cut(s) 155, 521
SstI GAGCTC 1 cut(s) 628
StyD4I CCNGG 2 cut(s) 15, 289
StyI CCWWGG 1 cut(s) 548
TaaI ACNGT 2 cut(s) 487, 496
TaiI ACGT 1 cut(s) 419
TaqI TCGA 4 cut(s) 71, 130, 360, 407
TaqII GACCGA 1 cut(s) 299
TasI AATT 6 cut(s) 299, 403, 507, 681, 806, 865
TatI WGTACW 1 cut(s) 384
Tru1I TTAA 3 cut(s) 450, 689, 876
Tru9I TTAA 3 cut(s) 450, 689, 876
TscAI CASTG 1 cut(s) 337
TseI GCWGC 4 cut(s) 49, 204, 217, 827
TspDTI ATGAA 4 cut(s) 109, 160, 413, 573
TspRI CASTG 1 cut(s) 337
Tth111I GACNNNGTC 1 cut(s) 320
Vha464I CTTAAG 2 cut(s) 449, 688
VpaK11BI GGWCC 2 cut(s) 530, 798
XagI CCTNNNNNAGG 1 cut(s) 618
XapI RAATTY 2 cut(s) 299, 403
XmiI GTMKAC 2 cut(s) 259, 544
XspI CTAG 2 cut(s) 155, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.