Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Forward (+)

28933154 .. 28934836

Gene Structure 1683 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56517

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGGGTTGATCCGCCGAGCAAAGCTTGGGTTAGCAGTGATTTTGGTGCAGCTCAGTCCTGTGCTTGACCAGAACCTCTACTACATGGGAATGAAGAATTTGAGTGCAACGTTCACTTCTGCAATGTTGAATATGCTGCCTGCTTTTGCATTTTGTCTAGCCTGGATTTTTAGGTATAACTCAATAATACACACTCATGTCCTTGGTCACACACTGATTTACAGACAGTACATTGACAATGCATTGACTTGTAGGTTTGAGAAGGTTAGCCTTAAGAAATTGCACAGCATAGCAAAGGTGATGGGGACGGTCATCACAGCGATTACCTTAAGATCCTACCCTTGTCAGCTCTCTCTCACAGCAATGATATGCTTTTGGGGTATGGTGGAAGGCGCAATACTGGCTTTTATAGTTGAAAGAGGACATAGCGGAGCCTGGTCCATACAATTCAACATCGAACTTGCAATGCAATCTGGTGTTGCTTATTATGTGATGGGAATGGTAGTGAAGGAAAAGGGACCTATTTTTTACTTGGCTTTTCATCCCTTGGCCACAGTAGGTTGCAATCCTGGGTTCCTTGTTTTAGCAGAACAATTGTACATTGGGAGTGTTATCGGAGTGGCTTTAATCATCATTGGTCTGTATCTCGTTCTCTGGGGAAAAGCAAAGGATCAGTCTCCTCCATCACAGTGCTGCATGATCGATGAAGTAGCACTAATAACACAAAGATTAATAGATGATCAGCAACGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

250

Amino Acids

27.83

Weight (kDa)

8.95

Isoelectric Point (pI)

33.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	13, 429
AclI	AACGTT	2 cut(s)	110, 748
AclWI	GGATC	3 cut(s)	4, 327, 678
AcoI	YGGCCR	1 cut(s)	549
AcsI	RAATTY	1 cut(s)	97
AfaI	GTAC	2 cut(s)	230, 599
AflII	CTTAAG	2 cut(s)	272, 328
AgsI	TTSAA	3 cut(s)	130, 416, 451
AjnI	CCWGG	3 cut(s)	161, 434, 568
AluBI	AGCT	3 cut(s)	25, 52, 349
AluI	AGCT	3 cut(s)	25, 52, 349
Alw26I	GTCTC	1 cut(s)	681
AlwI	GGATC	3 cut(s)	4, 327, 678
AoxI	GGCC	1 cut(s)	549
ApeKI	GCWGC	3 cut(s)	49, 136, 693
ApoI	RAATTY	1 cut(s)	97
ArsI	GACNNNNNNTTYG	2 cut(s)	659, 691
AseI	ATTAAT	1 cut(s)	731
AspLEI	GCGC	1 cut(s)	395
AspS9I	GGNCC	2 cut(s)	438, 518
AsuHPI	GGTGA	1 cut(s)	310
AvaII	GGWCC	2 cut(s)	438, 518
BalI	TGGCCA	1 cut(s)	551
BarI	GAAGNNNNNNTAC	2 cut(s)	381, 413
BbvI	GCAGC	3 cut(s)	61, 123, 680
BccI	CCATC	3 cut(s)	295, 487, 691
BciT130I	CCWGG	3 cut(s)	163, 436, 570
BclI	TGATCA	1 cut(s)	739
BcoDI	GTCTC	1 cut(s)	681
BfaI	CTAG	1 cut(s)	158
BfrI	CTTAAG	2 cut(s)	272, 328
BisI	GCNGC	3 cut(s)	50, 137, 694
BlsI	GCNGC	3 cut(s)	51, 138, 695
Bme1390I	CCNGG	3 cut(s)	163, 436, 570
Bme18I	GGWCC	2 cut(s)	438, 518
BmgT120I	GGNCC	2 cut(s)	438, 518
BmiI	GGNNCC	3 cut(s)	433, 519, 575
BmrFI	CCNGG	3 cut(s)	163, 436, 570
Bsa29I	ATCGAT	1 cut(s)	702
BsaJI	CCNNGG	3 cut(s)	202, 546, 569
Bse1I	ACTGG	1 cut(s)	405
Bse3DI	GCAATG	3 cut(s)	129, 369, 471
BseBI	CCWGG	3 cut(s)	163, 436, 570
BseCI	ATCGAT	1 cut(s)	702
BseDI	CCNNGG	3 cut(s)	202, 546, 569
BseGI	GGATG	1 cut(s)	541
BseMI	GCAATG	3 cut(s)	129, 369, 471
BseMII	CTCAG	1 cut(s)	67
BseNI	ACTGG	1 cut(s)	405
BseRI	GAGGAG	1 cut(s)	669
BseXI	GCAGC	3 cut(s)	61, 123, 680
BsgI	GTGCAG	1 cut(s)	68
BshFI	GGCC	1 cut(s)	551
BshVI	ATCGAT	1 cut(s)	702
BslFI	GGGAC	2 cut(s)	319, 531
BsmAI	GTCTC	1 cut(s)	681
BsmFI	GGGAC	2 cut(s)	319, 531
BsnI	GGCC	1 cut(s)	551
Bsp1407I	TGTACA	1 cut(s)	597
Bsp143I	GATC	5 cut(s)	9, 332, 670, 699, 739
BspACI	CCGC	2 cut(s)	13, 429
BspANI	GGCC	1 cut(s)	551
BspCNI	CTCAG	1 cut(s)	66
BspDI	ATCGAT	1 cut(s)	702
BspLI	GGNNCC	3 cut(s)	433, 519, 575
BspPI	GGATC	3 cut(s)	4, 327, 678
BspTI	CTTAAG	2 cut(s)	272, 328
BsrDI	GCAATG	3 cut(s)	129, 369, 471
BsrGI	TGTACA	1 cut(s)	597
BsrI	ACTGG	1 cut(s)	405
BssECI	CCNNGG	3 cut(s)	202, 546, 569
BssMI	GATC	5 cut(s)	9, 332, 670, 699, 739
BssT1I	CCWWGG	2 cut(s)	202, 546
Bst2UI	CCWGG	3 cut(s)	163, 436, 570
Bst4CI	ACNGT	4 cut(s)	228, 310, 556, 690
BstAFI	CTTAAG	2 cut(s)	272, 328
BstAUI	TGTACA	1 cut(s)	597
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	541
BstHHI	GCGC	1 cut(s)	395
BstKTI	GATC	5 cut(s)	12, 335, 673, 702, 742
BstMAI	GTCTC	1 cut(s)	681
BstMBI	GATC	5 cut(s)	9, 332, 670, 699, 739
BstMWI	GCNNNNNNNGC	1 cut(s)	401
BstNI	CCWGG	3 cut(s)	163, 436, 570
BstSCI	CCNGG	3 cut(s)	161, 434, 568
BstV1I	GCAGC	3 cut(s)	61, 123, 680
BstX2I	RGATCY	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	332
Bsu15I	ATCGAT	1 cut(s)	702
BsuRI	GGCC	1 cut(s)	551
BsuTUI	ATCGAT	1 cut(s)	702
BtsCI	GGATG	1 cut(s)	541
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	3 cut(s)	42, 212, 695
Cac8I	GCNNGC	1 cut(s)	141
CfoI	GCGC	1 cut(s)	395
Cfr13I	GGNCC	2 cut(s)	438, 518
ClaI	ATCGAT	1 cut(s)	702
Csp6I	GTAC	2 cut(s)	229, 598
CviAII	CATG	3 cut(s)	85, 197, 697
CviQI	GTAC	2 cut(s)	229, 598
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	5 cut(s)	11, 334, 672, 701, 741
DpnII	GATC	5 cut(s)	9, 332, 670, 699, 739
EaeI	YGGCCR	1 cut(s)	549
Eco130I	CCWWGG	2 cut(s)	202, 546
Eco47I	GGWCC	2 cut(s)	438, 518
EcoO109I	RGGNCCY	1 cut(s)	518
EcoRII	CCWGG	3 cut(s)	161, 434, 568
EcoT14I	CCWWGG	2 cut(s)	202, 546
EcoT22I	ATGCAT	1 cut(s)	244
ErhI	CCWWGG	2 cut(s)	202, 546
FaeI	CATG	3 cut(s)	88, 200, 700
FaqI	GGGAC	2 cut(s)	319, 531
FatI	CATG	3 cut(s)	84, 196, 696
FbaI	TGATCA	1 cut(s)	739
Fnu4HI	GCNGC	3 cut(s)	50, 137, 694
FokI	GGATG	1 cut(s)	528
Fsp4HI	GCNGC	3 cut(s)	50, 137, 694
FspBI	CTAG	1 cut(s)	158
GlaI	GCGC	1 cut(s)	394
GluI	GCNGC	3 cut(s)	50, 137, 694
HaeIII	GGCC	1 cut(s)	551
HhaI	GCGC	1 cut(s)	395
Hin1II	CATG	3 cut(s)	88, 200, 700
Hin6I	GCGC	1 cut(s)	393
HinP1I	GCGC	1 cut(s)	393
HindIII	AAGCTT	1 cut(s)	23
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	1 cut(s)	617
Hpy8I	GTNNAC	1 cut(s)	114
HpyAV	CCTTC	3 cut(s)	256, 383, 502
HpyCH4III	ACNGT	4 cut(s)	228, 310, 556, 690
HpyCH4IV	ACGT	2 cut(s)	110, 748
HpyF10VI	GCNNNNNNNGC	1 cut(s)	401
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	2 cut(s)	110, 748
Hsp92II	CATG	3 cut(s)	88, 200, 700
HspAI	GCGC	1 cut(s)	393
Ksp22I	TGATCA	1 cut(s)	739
Kzo9I	GATC	5 cut(s)	9, 332, 670, 699, 739
LmnI	GCTCC	1 cut(s)	431
Lsp1109I	GCAGC	3 cut(s)	61, 123, 680
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	2 cut(s)	110, 748
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	5 cut(s)	11, 334, 672, 701, 741
MboI	GATC	5 cut(s)	9, 332, 670, 699, 739
MboII	GAAGA	1 cut(s)	106
MfeI	CAATTG	1 cut(s)	593
MflI	RGATCY	1 cut(s)	332
MlsI	TGGCCA	1 cut(s)	551
MluCI	AATT	4 cut(s)	97, 278, 446, 593
MluNI	TGGCCA	1 cut(s)	551
MnlI	CCTC	3 cut(s)	86, 413, 690
Mox20I	TGGCCA	1 cut(s)	551
Mph1103I	ATGCAT	1 cut(s)	244
MscI	TGGCCA	1 cut(s)	551
MseI	TTAA	5 cut(s)	273, 329, 626, 731, 751
MslI	CAYNNNNRTG	4 cut(s)	89, 195, 362, 688
Msp20I	TGGCCA	1 cut(s)	551
MspCI	CTTAAG	2 cut(s)	272, 328
MspR9I	CCNGG	3 cut(s)	163, 436, 570
MunI	CAATTG	1 cut(s)	593
MvaI	CCWGG	3 cut(s)	163, 436, 570
MwoI	GCNNNNNNNGC	1 cut(s)	401
NdeII	GATC	5 cut(s)	9, 332, 670, 699, 739
NlaIII	CATG	3 cut(s)	88, 200, 700
NlaIV	GGNNCC	3 cut(s)	433, 519, 575
NmeAIII	GCCGAG	1 cut(s)	41
NmuCI	GTSAC	1 cut(s)	206
NsiI	ATGCAT	1 cut(s)	244
PkrI	GCNGC	3 cut(s)	51, 138, 695
PpuMI	RGGWCCY	1 cut(s)	518
PshBI	ATTAAT	1 cut(s)	731
Psp1406I	AACGTT	2 cut(s)	110, 748
Psp5II	RGGWCCY	1 cut(s)	518
Psp6I	CCWGG	3 cut(s)	161, 434, 568
PspGI	CCWGG	3 cut(s)	161, 434, 568
PspN4I	GGNNCC	3 cut(s)	433, 519, 575
PspPI	GGNCC	2 cut(s)	438, 518
PspPPI	RGGWCCY	1 cut(s)	518
PsrI	GAACNNNNNNTAC	2 cut(s)	65, 97
PsuI	RGATCY	1 cut(s)	332
RsaI	GTAC	2 cut(s)	230, 599
RsaNI	GTAC	2 cut(s)	229, 598
RseI	CAYNNNNRTG	4 cut(s)	89, 195, 362, 688
SaqAI	TTAA	5 cut(s)	273, 329, 626, 731, 751
SatI	GCNGC	3 cut(s)	50, 137, 694
Sau3AI	GATC	5 cut(s)	9, 332, 670, 699, 739
Sau96I	GGNCC	2 cut(s)	438, 518
ScrFI	CCNGG	3 cut(s)	163, 436, 570
SinI	GGWCC	2 cut(s)	438, 518
SmiMI	CAYNNNNRTG	4 cut(s)	89, 195, 362, 688
SmlI	CTYRAG	2 cut(s)	272, 328
SmoI	CTYRAG	2 cut(s)	272, 328
Sse9I	AATT	4 cut(s)	97, 278, 446, 593
SsiI	CCGC	2 cut(s)	13, 429
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	3 cut(s)	161, 434, 568
StyI	CCWWGG	2 cut(s)	202, 546
TaaI	ACNGT	4 cut(s)	228, 310, 556, 690
TaiI	ACGT	2 cut(s)	113, 751
TaqI	TCGA	2 cut(s)	456, 702
TasI	AATT	4 cut(s)	97, 278, 446, 593
TatI	WGTACW	2 cut(s)	228, 597
Tru1I	TTAA	5 cut(s)	273, 329, 626, 731, 751
Tru9I	TTAA	5 cut(s)	273, 329, 626, 731, 751
TscAI	CASTG	3 cut(s)	42, 219, 695
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	3 cut(s)	49, 136, 693
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	3 cut(s)	107, 530, 720
TspRI	CASTG	3 cut(s)	42, 219, 695
Vha464I	CTTAAG	2 cut(s)	272, 328
VpaK11BI	GGWCC	2 cut(s)	438, 518
VspI	ATTAAT	1 cut(s)	731
XapI	RAATTY	1 cut(s)	97
XspI	CTAG	1 cut(s)	158
Zsp2I	ATGCAT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.