Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Forward (+)

59203275 .. 59203631

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG449900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGGGCTGGTTGTGACGAAGAAGGGAACAGTTTTCTACTCTGCCTTTAACCCCTTGGCCACCCTGCTTGTGGCGATTTTGGGATCATTTTTTCTGGCAGAACAATTGTATACTGGAATTTATGAATGTTTTCCCGCTCCTATTCTCATCGGAGCTGTAACCATTGTGGGAGGCCTCTATCTTGTTCTTTGGGGAAAAGCAAGAGATCAGCCTCCCTCTTTGAATGCCAATGTGGAAGAACCAACTGGAACCCCAACAATAGACGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

89

Amino Acids

9.49

Weight (kDa)

4.55

Isoelectric Point (pI)

33.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	110
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	1 cut(s)	91
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	70
AgsI	TTSAA	1 cut(s)	223
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
AlwI	GGATC	1 cut(s)	91
AoxI	GGCC	2 cut(s)	57, 172
ApoI	RAATTY	1 cut(s)	117
Asp700I	GAANNNNTTC	1 cut(s)	129
BalI	TGGCCA	1 cut(s)	59
BmiI	GGNNCC	1 cut(s)	250
BsaJI	CCNNGG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse1I	ACTGG	2 cut(s)	118, 250
BseDI	CCNNGG	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseNI	ACTGG	2 cut(s)	118, 250
BshFI	GGCC	2 cut(s)	59, 174
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	2 cut(s)	59, 174
Bsp143I	GATC	2 cut(s)	83, 205
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	2 cut(s)	59, 174
BspLI	GGNNCC	1 cut(s)	250
BspPI	GGATC	1 cut(s)	91
BsrBI	CCGCTC	1 cut(s)	137
BsrI	ACTGG	2 cut(s)	118, 250
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	2 cut(s)	83, 205
BssNAI	GTATAC	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	54
Bst1107I	GTATAC	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	31
BstKTI	GATC	2 cut(s)	86, 208
BstMBI	GATC	2 cut(s)	83, 205
BstZ17I	GTATAC	1 cut(s)	111
BsuRI	GGCC	2 cut(s)	59, 174
CspCI	CAANNNNNGTGG	2 cut(s)	49, 84
CviJI	RGCY	5 cut(s)	7, 59, 155, 174, 211
CviKI_1	RGCY	5 cut(s)	7, 59, 155, 174, 211
DpnI	GATC	2 cut(s)	85, 207
DpnII	GATC	2 cut(s)	83, 205
EaeI	YGGCCR	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	54
Eco147I	AGGCCT	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaiI	YATR	2 cut(s)	111, 123
FauI	CCCGC	1 cut(s)	142
FblI	GTMKAC	1 cut(s)	110
HaeIII	GGCC	2 cut(s)	59, 174
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	1 cut(s)	152
Hpy8I	GTNNAC	1 cut(s)	111
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	83, 205
LmnI	GCTCC	2 cut(s)	142, 152
LpnPI	CCDG	4 cut(s)	77, 80, 99, 231
MaeIII	GTNAC	2 cut(s)	13, 157
MalI	GATC	2 cut(s)	85, 207
MbiI	CCGCTC	1 cut(s)	137
MboI	GATC	2 cut(s)	83, 205
MboII	GAAGA	2 cut(s)	31, 248
MfeI	CAATTG	1 cut(s)	104
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	2 cut(s)	104, 117
MluNI	TGGCCA	1 cut(s)	59
MnlI	CCTC	4 cut(s)	164, 185, 222, 226
Mox20I	TGGCCA	1 cut(s)	59
MroXI	GAANNNNTTC	1 cut(s)	129
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	2 cut(s)	48, 268
Msp20I	TGGCCA	1 cut(s)	59
MunI	CAATTG	1 cut(s)	104
Mva1269I	GAATGC	1 cut(s)	229
NdeII	GATC	2 cut(s)	83, 205
NlaIV	GGNNCC	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	13
PceI	AGGCCT	1 cut(s)	174
PctI	GAATGC	1 cut(s)	229
PdmI	GAANNNNTTC	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	250
SaqAI	TTAA	2 cut(s)	48, 268
Sau3AI	GATC	2 cut(s)	83, 205
SetI	ASST	1 cut(s)	157
Sse9I	AATT	2 cut(s)	104, 117
SseBI	AGGCCT	1 cut(s)	174
SsiI	CCGC	1 cut(s)	135
StuI	AGGCCT	1 cut(s)	174
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	31
TasI	AATT	2 cut(s)	104, 117
Tru1I	TTAA	2 cut(s)	48, 268
Tru9I	TTAA	2 cut(s)	48, 268
TseFI	GTSAC	1 cut(s)	13
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	1 cut(s)	138
XapI	RAATTY	1 cut(s)	117
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67
XmiI	GTMKAC	1 cut(s)	110
XmnI	GAANNNNTTC	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.