RLG00000017111

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
12907113 .. 12908468
1356 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017111

Sequence Viewer

Length: 939 bp
ATGAGCCACTACACCTTTGTGGTGTATCGTATGGCCATTGCAACTGCCTTGGGAAGTCCACTGGCATGGTATCTAGAGAGACATTCTAGGCCTACAATGACCATCAAGGTCATGGCAAAGATCATGCTGCTAAGCATGTTTGACTCTGTACTGGACCAAAACTTGTACCATGTGGGCATGGAGAACTCCAATGCCACATTCACATCGGCCATGTGCAACATGCTTCCGGTGTTTGCATTTGTCATGGCCTGGATTTTCAGGTTGGAGAATGTGGACTACAGACACCCGAGGGGATTGGCCAAGGTTCTAGGAACCTTGGTTTCTGTGGTAGGAGCAATCCTCCTTACCATGGTCAAGGGGCCTTCTCTCAAGTTGCCATGGGCAAGGAACCATGAGAAAAATCATTCTTCACAGCCCAAAGTCAAGGGTGCTATCTTCCTAACACTAGCCTGCTTTTGCTGGTCCTGTTTCATAGTCCTACAAGCCAATGTACTCAAGTCGTATCCCTGCAAGCTTTCTCTCACCGCTTTGATTTGCTTCTGGGGTATGGTGGAAGGAGCAGTGGTGGCTATTGTGGTTGAAAGGGAAAATTCAGAAGCATGGTCCATACACTTCGACTTCAAGTTGCTCGCAGCTGTTTATGGGGTGAGGAAAACTTTTAATGGCTCTTCTATCGGGGGCTGTATATTATGTCATGGGGCTGGTTGTGACGAAGAAGGGACCAGTTTTCACTCTGCCTTTAACCCTTTGGCCACCCTGCTTGTGGCGATTTTGGGATCATTTTTTCTGGCAGAACAATTGTATACTGGAATTCTCATCAGAGCTGTAACCATTGTGGGAGGCCTCTATCTTGTTCTTTGGGGAAAAGCAAGAGATCAGCCTCCCTCTTTGAATGCCAATGTGGAAGAACCAACTGGAACCCCAGCAATAGACGATTAA

Protein Analysis

313

Amino Acids

34.31

Weight (kDa)

8.34

Isoelectric Point (pI)

27.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 2 - 116 1.8e-10 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000617)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39510
fragaria_vesca FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 803
AciI CCGC 1 cut(s) 525
AclWI GGATC 1 cut(s) 784
AcoI YGGCCR 4 cut(s) 33, 207, 297, 750
AcsI RAATTY 2 cut(s) 589, 810
AfaI GTAC 3 cut(s) 150, 167, 492
AfiI CCNNNNNNNGG 2 cut(s) 349, 763
AgsI TTSAA 3 cut(s) 581, 622, 892
AjnI CCWGG 1 cut(s) 248
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
AleI CACNNNNGTG 1 cut(s) 17
AluBI AGCT 3 cut(s) 514, 635, 824
AluI AGCT 3 cut(s) 514, 635, 824
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 1 cut(s) 784
Ama87I CYCGRG 1 cut(s) 286
AoxI GGCC 8 cut(s) 33, 89, 207, 246, 297, 359, 750, 841
ApeKI GCWGC 2 cut(s) 127, 632
ApoI RAATTY 2 cut(s) 589, 810
AspS9I GGNCC 5 cut(s) 154, 359, 462, 603, 720
AsuHPI GGTGA 2 cut(s) 514, 658
AvaI CYCGRG 1 cut(s) 286
AvaII GGWCC 4 cut(s) 154, 462, 603, 720
BalI TGGCCA 3 cut(s) 35, 299, 752
BbvI GCAGC 2 cut(s) 114, 644
BccI CCATC 1 cut(s) 110
BciT130I CCWGG 1 cut(s) 250
BciVI GTATCC 1 cut(s) 513
BcoDI GTCTC 1 cut(s) 73
BfaI CTAG 4 cut(s) 74, 87, 308, 446
BfmI CTRYAG 1 cut(s) 277
BfuI GTATCC 1 cut(s) 513
BisI GCNGC 2 cut(s) 128, 633
BlpI GCTNAGC 1 cut(s) 131
BlsI GCNGC 2 cut(s) 129, 634
Bme1390I CCNGG 1 cut(s) 250
Bme18I GGWCC 4 cut(s) 154, 462, 603, 720
BmeT110I CYCGRG 1 cut(s) 286
BmgT120I GGNCC 5 cut(s) 154, 359, 462, 603, 720
BmiI GGNNCC 5 cut(s) 313, 360, 389, 721, 919
BmrFI CCNGG 1 cut(s) 250
BplI GAGNNNNNCTC 2 cut(s) 324, 356
Bpu1102I GCTNAGC 1 cut(s) 131
BpuEI CTTGAG 2 cut(s) 353, 479
BsaJI CCNNGG 6 cut(s) 48, 287, 300, 315, 348, 377
BsaWI WCCGGW 1 cut(s) 226
BsaXI ACNNNNNCTCC 2 cut(s) 549, 579
Bsc4I CCNNNNNNNGG 2 cut(s) 349, 763
Bse1I ACTGG 5 cut(s) 66, 156, 723, 811, 919
Bse3DI GCAATG 1 cut(s) 36
BseBI CCWGG 1 cut(s) 250
BseDI CCNNGG 6 cut(s) 48, 287, 300, 315, 348, 377
BseLI CCNNNNNNNGG 2 cut(s) 349, 763
BseMI GCAATG 1 cut(s) 36
BseNI ACTGG 5 cut(s) 66, 156, 723, 811, 919
BseXI GCAGC 2 cut(s) 114, 644
BseYI CCCAGC 1 cut(s) 922
BshFI GGCC 8 cut(s) 35, 91, 209, 248, 299, 361, 752, 843
BsiHKCI CYCGRG 1 cut(s) 286
BsiSI CCGG 1 cut(s) 227
BslFI GGGAC 1 cut(s) 733
BslI CCNNNNNNNGG 2 cut(s) 349, 763
BsmAI GTCTC 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 733
BsmI GAATGC 1 cut(s) 898
BsnI GGCC 8 cut(s) 35, 91, 209, 248, 299, 361, 752, 843
BsoBI CYCGRG 1 cut(s) 286
Bsp143I GATC 3 cut(s) 120, 776, 874
Bsp1720I GCTNAGC 1 cut(s) 131
Bsp19I CCATGG 2 cut(s) 348, 377
BspACI CCGC 1 cut(s) 525
BspANI GGCC 8 cut(s) 35, 91, 209, 248, 299, 361, 752, 843
BspLI GGNNCC 5 cut(s) 313, 360, 389, 721, 919
BspPI GGATC 1 cut(s) 784
BspQI GCTCTTC 1 cut(s) 673
BsrDI GCAATG 1 cut(s) 36
BsrI ACTGG 5 cut(s) 66, 156, 723, 811, 919
BssECI CCNNGG 6 cut(s) 48, 287, 300, 315, 348, 377
BssMI GATC 3 cut(s) 120, 776, 874
BssNAI GTATAC 1 cut(s) 804
BssT1I CCWWGG 5 cut(s) 48, 300, 315, 348, 377
Bst1107I GTATAC 1 cut(s) 804
Bst2UI CCWGG 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 673
BstC8I GCNNGC 3 cut(s) 451, 512, 630
BstDEI CTNAG 1 cut(s) 131
BstDSI CCRYGG 2 cut(s) 348, 377
BstKTI GATC 3 cut(s) 123, 779, 877
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 3 cut(s) 120, 776, 874
BstMWI GCNNNNNNNGC 1 cut(s) 566
BstNI CCWGG 1 cut(s) 250
BstNSI RCATGY 2 cut(s) 139, 223
BstSCI CCNGG 1 cut(s) 248
BstSFI CTRYAG 1 cut(s) 277
BstV1I GCAGC 2 cut(s) 114, 644
BstXI CCANNNNNNTGG 1 cut(s) 66
BstZ17I GTATAC 1 cut(s) 804
BsuI GTATCC 1 cut(s) 513
BsuRI GGCC 8 cut(s) 35, 91, 209, 248, 299, 361, 752, 843
BtgI CCRYGG 2 cut(s) 348, 377
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 2 cut(s) 59, 567
Cac8I GCNNGC 3 cut(s) 451, 512, 630
Cfr13I GGNCC 5 cut(s) 154, 359, 462, 603, 720
Csp6I GTAC 3 cut(s) 149, 166, 491
CspCI CAANNNNNGTGG 2 cut(s) 742, 777
CviQI GTAC 3 cut(s) 149, 166, 491
DdeI CTNAG 1 cut(s) 131
DpnI GATC 3 cut(s) 122, 778, 876
DpnII GATC 3 cut(s) 120, 776, 874
EaeI YGGCCR 4 cut(s) 33, 207, 297, 750
Eam1104I CTCTTC 1 cut(s) 673
EarI CTCTTC 1 cut(s) 673
Eco130I CCWWGG 5 cut(s) 48, 300, 315, 348, 377
Eco147I AGGCCT 2 cut(s) 91, 843
Eco47I GGWCC 4 cut(s) 154, 462, 603, 720
Eco88I CYCGRG 1 cut(s) 286
EcoO109I RGGNCCY 1 cut(s) 359
EcoRI GAATTC 1 cut(s) 810
EcoRII CCWGG 1 cut(s) 248
EcoT14I CCWWGG 5 cut(s) 48, 300, 315, 348, 377
ErhI CCWWGG 5 cut(s) 48, 300, 315, 348, 377
FaqI GGGAC 1 cut(s) 733
FblI GTMKAC 1 cut(s) 803
Fnu4HI GCNGC 2 cut(s) 128, 633
Fsp4HI GCNGC 2 cut(s) 128, 633
FspBI CTAG 4 cut(s) 74, 87, 308, 446
GluI GCNGC 2 cut(s) 128, 633
GsaI CCCAGC 1 cut(s) 926
HaeIII GGCC 8 cut(s) 35, 91, 209, 248, 299, 361, 752, 843
HapII CCGG 1 cut(s) 227
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 1 cut(s) 143
HpaII CCGG 1 cut(s) 227
HphI GGTGA 2 cut(s) 514, 658
Hpy166II GTNNAC 3 cut(s) 59, 274, 804
Hpy188I TCNGA 2 cut(s) 595, 821
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 3 cut(s) 59, 274, 804
HpyAV CCTTC 3 cut(s) 372, 548, 710
HpyCH4V TGCA 4 cut(s) 41, 216, 236, 510
HpyF10VI GCNNNNNNNGC 1 cut(s) 566
HpyF3I CTNAG 1 cut(s) 131
Kzo9I GATC 3 cut(s) 120, 776, 874
LguI GCTCTTC 1 cut(s) 673
LmnI GCTCC 2 cut(s) 332, 557
Lsp1109I GCAGC 2 cut(s) 114, 644
MaeI CTAG 4 cut(s) 74, 87, 308, 446
MaeIII GTNAC 2 cut(s) 707, 826
MalI GATC 3 cut(s) 122, 778, 876
MboI GATC 3 cut(s) 120, 776, 874
MboII GAAGA 5 cut(s) 399, 427, 660, 725, 917
MfeI CAATTG 1 cut(s) 797
MlsI TGGCCA 3 cut(s) 35, 299, 752
MluCI AATT 3 cut(s) 589, 797, 810
MluNI TGGCCA 3 cut(s) 35, 299, 752
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 7 cut(s) 282, 350, 642, 833, 854, 891, 895
Mox20I TGGCCA 3 cut(s) 35, 299, 752
MscI TGGCCA 3 cut(s) 35, 299, 752
MseI TTAA 3 cut(s) 660, 741, 937
MslI CAYNNNNRTG 2 cut(s) 17, 64
Msp20I TGGCCA 3 cut(s) 35, 299, 752
MspA1I CMGCKG 1 cut(s) 635
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 1 cut(s) 250
MunI CAATTG 1 cut(s) 797
Mva1269I GAATGC 1 cut(s) 898
MvaI CCWGG 1 cut(s) 250
MwoI GCNNNNNNNGC 1 cut(s) 566
NcoI CCATGG 2 cut(s) 348, 377
NdeII GATC 3 cut(s) 120, 776, 874
NlaIV GGNNCC 5 cut(s) 313, 360, 389, 721, 919
NmuCI GTSAC 1 cut(s) 707
NspI RCATGY 2 cut(s) 139, 223
OliI CACNNNNGTG 1 cut(s) 17
PceI AGGCCT 2 cut(s) 91, 843
PciSI GCTCTTC 1 cut(s) 673
PctI GAATGC 1 cut(s) 898
PkrI GCNGC 2 cut(s) 129, 634
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 248
PspFI CCCAGC 1 cut(s) 922
PspGI CCWGG 1 cut(s) 248
PspN4I GGNNCC 5 cut(s) 313, 360, 389, 721, 919
PspPI GGNCC 5 cut(s) 154, 359, 462, 603, 720
PvuII CAGCTG 1 cut(s) 635
RsaI GTAC 3 cut(s) 150, 167, 492
RsaNI GTAC 3 cut(s) 149, 166, 491
RseI CAYNNNNRTG 2 cut(s) 17, 64
SapI GCTCTTC 1 cut(s) 673
SaqAI TTAA 3 cut(s) 660, 741, 937
SatI GCNGC 2 cut(s) 128, 633
Sau3AI GATC 3 cut(s) 120, 776, 874
Sau96I GGNCC 5 cut(s) 154, 359, 462, 603, 720
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 250
SetI ASST 8 cut(s) 17, 111, 263, 306, 317, 516, 637, 826
SfcI CTRYAG 1 cut(s) 277
SinI GGWCC 4 cut(s) 154, 462, 603, 720
SmiMI CAYNNNNRTG 2 cut(s) 17, 64
SmlI CTYRAG 2 cut(s) 368, 494
SmoI CTYRAG 2 cut(s) 368, 494
Sse9I AATT 3 cut(s) 589, 797, 810
SseBI AGGCCT 2 cut(s) 91, 843
SsiI CCGC 1 cut(s) 525
SspMI CTAG 4 cut(s) 74, 87, 308, 446
StuI AGGCCT 2 cut(s) 91, 843
StyD4I CCNGG 1 cut(s) 248
StyI CCWWGG 5 cut(s) 48, 300, 315, 348, 377
TaqI TCGA 1 cut(s) 615
TasI AATT 3 cut(s) 589, 797, 810
TatI WGTACW 2 cut(s) 148, 490
Tru1I TTAA 3 cut(s) 660, 741, 937
Tru9I TTAA 3 cut(s) 660, 741, 937
TscAI CASTG 2 cut(s) 66, 567
TseFI GTSAC 1 cut(s) 707
TseI GCWGC 2 cut(s) 127, 632
Tsp45I GTSAC 1 cut(s) 707
TspDTI ATGAA 1 cut(s) 460
TspRI CASTG 2 cut(s) 66, 567
VpaK11BI GGWCC 4 cut(s) 154, 462, 603, 720
XapI RAATTY 2 cut(s) 589, 810
XbaI TCTAGA 1 cut(s) 73
XceI RCATGY 2 cut(s) 139, 223
XcmI CCANNNNNNNNNTGG 2 cut(s) 109, 760
XmiI GTMKAC 1 cut(s) 803
XspI CTAG 4 cut(s) 74, 87, 308, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.