Rorug01G0326800

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
44628794 .. 44633259
4466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0326800.1

Sequence Viewer

Length: 1476 bp
ATGAAGATGGACAGAGGAACTTATATCATCGTAAAGGAAGATATGAAGTTCCTCCCAAGTGAGGATCAGCTCATCAAATTTTTGAAGATGAAGATTGATGGTAGATACTCTGGGTTCATATCCGAAATCAACTTATACAAGCACGAGCCATGGGATTTTCCCGCATTATCAGTGGTAAAGTTCAGTGAAGAGTGGTTCTTCTTCACAGAGAATAGCAGAAAGTACAAGACAAGCGATCGAAGCAACAGACAAACAGAGAAGGGTTATTGGCATGAAACTTCCAAGGAAGTACCAGTGGTCAATACTAATGACAAGTCTAAAGTCATTGGCAGAAAACGATTTCTAGTATTCTACAAAGGTCGTGCTTCTCGTAAAGAAAAGACTAACTGGGTTATGCAAGAGTATTTTGTTCCTGAGGCTGAGCTCGAGACGAACTTAGTGCTTTGTCGCATAAAGCAGAAATCAGTGGGGAGTTCTCGTGAAGATAGTAACAACGGTATTGTATTTGATATTGAGGGGACAGAGATGACTGCAACCCTGACGTTTCCAGAGGGCTTTAAGTTCCAACCATCAGAAGAGCGGCTAGTGAACCATTACTTACGGAAGAAACTATTATTCCCTGAAATTGATTTATGTCAATATGAGCCTCATGAATTACCAGCATTATCATTGATAGAGTCGAATAAAGAGTGGTTTTTCTTCAATCGGGGGAGAGGCAGAAGAACTAAACAAGGTTACTGGAAGAAAACTGGATCTGGCCGTAAAATAAAGGCTTCAGATAAGTCGATCATTGGTGAACTGAGGCACATGACATTCCATTGCTCTCCCACAGGGCAGGTGACTGCATGGGTTATACACGAGTATTCTCTTCTTCCCGACCAGGGGGACATAGTTTTGTGTCGGTTAAAGTTAAAGTCAATAGACGATACTGCAACTACTTCTGATGATTTGGATATGGAGGACGTTCCAGAGCTACTTGATCAGCCAGAAGTAAATCTGGATTCACTCTTTCCTCCACTTGAGCCACAACAGGAGTGCCGCCCCTATGTACGGCAGTCACCATTATCCACAGAGCTGGGAAATGATCCAAACACCAATGTCTATTACAGTGAATGCAGTAAGTGGCAATGTGCATTAGGGACTGATGATTCATATCTTAGACATCTGAAAAGAATTTCAACCAATGATCATGAGAAACCAGTTAGACATGCTATGGCTAAGTTTCAAAATAGAGCTACAGCTCATACGATTTTGGAGGTGTATCCTCAAACCGAAGATTCTGCAGAACTCGGAGATGCTCTGCATTATAATGAATGTAGTGAGCTTCAATCTCCATTTGTGGACAATGATTCATCTCTTACAGAGTTTTTGAATACATGTATTGCTGACCAGGATTATTACTCCTCTGAAGAATCAGCACTGATTCCTTCCAAAGACTCCAACCTAGCTACTAAAGTTAAAAGGAAGGGTCTGTGA

Protein Analysis

491

Amino Acids

56.92

Weight (kDa)

5.85

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 14 - 135 8.8e-30 No apical meristem (NAM) protein
NAM PF02365 183 - 290 8.2e-24 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000617)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39510
fragaria_vesca FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1308
AarI CACCTGC 1 cut(s) 826
Acc36I ACCTGC 1 cut(s) 826
AccBSI CCGCTC 1 cut(s) 580
AciI CCGC 3 cut(s) 162, 580, 1039
AclWI GGATC 3 cut(s) 72, 760, 1079
AcoI YGGCCR 1 cut(s) 757
AcsI RAATTY 2 cut(s) 77, 1173
AcuI CTGAAG 2 cut(s) 759, 1428
AfaI GTAC 3 cut(s) 224, 291, 1050
AfiI CCNNNNNNNGG 4 cut(s) 61, 881, 882, 1050
AflIII ACRYGT 1 cut(s) 1376
AgsI TTSAA 6 cut(s) 85, 703, 1179, 1226, 1328, 1372
AjnI CCWGG 2 cut(s) 879, 1389
AluBI AGCT 8 cut(s) 70, 424, 973, 1075, 1235, 1241, 1324, 1448
AluI AGCT 8 cut(s) 70, 424, 973, 1075, 1235, 1241, 1324, 1448
Alw21I GWGCWC 1 cut(s) 426
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 3 cut(s) 72, 760, 1079
Ama87I CYCGRG 1 cut(s) 425
AoxI GGCC 1 cut(s) 757
ApoI RAATTY 2 cut(s) 77, 1173
AsuHPI GGTGA 3 cut(s) 806, 850, 1050
AvaI CYCGRG 1 cut(s) 425
AxyI CCTNAGG 1 cut(s) 414
BanII GRGCYC 1 cut(s) 426
BauI CACGAG 3 cut(s) 143, 477, 857
Bbv12I GWGCWC 1 cut(s) 426
BccI CCATC 2 cut(s) 92, 577
BceAI ACGGC 2 cut(s) 744, 1067
BcgI CGANNNNNNTGC 4 cut(s) 421, 455, 1262, 1296
BciT130I CCWGG 2 cut(s) 881, 1391
BciVI GTATCC 1 cut(s) 1272
BclI TGATCA 2 cut(s) 979, 1186
BcoDI GTCTC 1 cut(s) 422
BfaI CTAG 3 cut(s) 344, 584, 1445
BfmI CTRYAG 2 cut(s) 1236, 1281
BfuAI ACCTGC 1 cut(s) 826
BfuI GTATCC 1 cut(s) 1272
BisI GCNGC 2 cut(s) 581, 1039
BlpI GCTNAGC 1 cut(s) 420
BlsI GCNGC 2 cut(s) 582, 1040
Bme1390I CCNGG 2 cut(s) 881, 1391
BmeT110I CYCGRG 1 cut(s) 425
BmrFI CCNGG 2 cut(s) 881, 1391
BmrI ACTGGG 1 cut(s) 397
BmsI GCATC 1 cut(s) 1285
BmuI ACTGGG 1 cut(s) 397
Bpu1102I GCTNAGC 1 cut(s) 420
BpuEI CTTGAG 1 cut(s) 1040
BsaBI GATNNNNATC 1 cut(s) 1152
BsaJI CCNNGG 3 cut(s) 149, 282, 880
BsaXI ACNNNNNCTCC 2 cut(s) 463, 493
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 881, 882, 1050
Bse1I ACTGG 5 cut(s) 293, 392, 743, 754, 1199
Bse21I CCTNAGG 1 cut(s) 414
Bse3DI GCAATG 2 cut(s) 817, 1133
Bse8I GATNNNNATC 1 cut(s) 1152
BseBI CCWGG 2 cut(s) 881, 1391
BseDI CCNNGG 3 cut(s) 149, 282, 880
BseJI GATNNNNATC 1 cut(s) 1152
BseLI CCNNNNNNNGG 4 cut(s) 61, 881, 882, 1050
BseMI GCAATG 2 cut(s) 817, 1133
BseMII CTCAG 3 cut(s) 405, 411, 791
BseNI ACTGG 5 cut(s) 293, 392, 743, 754, 1199
BseRI GAGGAG 1 cut(s) 1393
BseYI CCCAGC 1 cut(s) 1075
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 1 cut(s) 759
BsiEI CGRYCG 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 426
BsiHKCI CYCGRG 1 cut(s) 425
BslFI GGGAC 3 cut(s) 532, 899, 1153
BslI CCNNNNNNNGG 4 cut(s) 61, 881, 882, 1050
BsmAI GTCTC 1 cut(s) 422
BsmBI CGTCTC 1 cut(s) 422
BsmFI GGGAC 3 cut(s) 532, 899, 1153
BsmI GAATGC 1 cut(s) 1118
BsnI GGCC 1 cut(s) 759
BsoBI CYCGRG 1 cut(s) 425
Bsp1286I GDGCHC 1 cut(s) 426
Bsp143I GATC 7 cut(s) 64, 235, 752, 786, 979, 1084, 1186
Bsp1720I GCTNAGC 1 cut(s) 420
Bsp19I CCATGG 1 cut(s) 149
BspACI CCGC 3 cut(s) 162, 580, 1039
BspANI GGCC 1 cut(s) 759
BspCNI CTCAG 3 cut(s) 406, 412, 792
BspHI TCATGA 2 cut(s) 649, 1189
BspMAI CTGCAG 1 cut(s) 1285
BspMI ACCTGC 1 cut(s) 826
BspPI GGATC 3 cut(s) 72, 760, 1079
BspQI GCTCTTC 1 cut(s) 570
BsrBI CCGCTC 1 cut(s) 580
BsrDI GCAATG 2 cut(s) 817, 1133
BsrI ACTGG 5 cut(s) 293, 392, 743, 754, 1199
BssECI CCNNGG 3 cut(s) 149, 282, 880
BssMI GATC 7 cut(s) 64, 235, 752, 786, 979, 1084, 1186
BssSI CACGAG 3 cut(s) 143, 477, 857
BssT1I CCWWGG 2 cut(s) 149, 282
Bst2BI CACGAG 3 cut(s) 143, 477, 857
Bst2UI CCWGG 2 cut(s) 881, 1391
Bst4CI ACNGT 2 cut(s) 497, 1109
Bst6I CTCTTC 3 cut(s) 183, 570, 873
BstDEI CTNAG 6 cut(s) 414, 420, 436, 800, 1157, 1218
BstDSI CCRYGG 1 cut(s) 149
BstKTI GATC 7 cut(s) 67, 238, 755, 789, 982, 1087, 1189
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 7 cut(s) 64, 235, 752, 786, 979, 1084, 1186
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstNI CCWGG 2 cut(s) 881, 1391
BstNSI RCATGY 2 cut(s) 1211, 1380
BstSCI CCNGG 2 cut(s) 879, 1389
BstSFI CTRYAG 2 cut(s) 1236, 1281
BstX2I RGATCY 1 cut(s) 752
BstXI CCANNNNNNTGG 1 cut(s) 1075
BstYI RGATCY 1 cut(s) 752
Bsu36I CCTNAGG 1 cut(s) 414
BsuI GTATCC 1 cut(s) 1272
BsuRI GGCC 1 cut(s) 759
BtgI CCRYGG 1 cut(s) 149
BtsIMutI CAGTG 6 cut(s) 177, 190, 300, 471, 1114, 1418
BveI ACCTGC 1 cut(s) 826
CciI TCATGA 2 cut(s) 649, 1189
Csp6I GTAC 3 cut(s) 223, 290, 1049
CviAII CATG 8 cut(s) 150, 272, 650, 808, 846, 1190, 1208, 1377
CviQI GTAC 3 cut(s) 223, 290, 1049
DdeI CTNAG 6 cut(s) 414, 420, 436, 800, 1157, 1218
DpnI GATC 7 cut(s) 66, 237, 754, 788, 981, 1086, 1188
DpnII GATC 7 cut(s) 64, 235, 752, 786, 979, 1084, 1186
EaeI YGGCCR 1 cut(s) 757
Eam1104I CTCTTC 3 cut(s) 183, 570, 873
EarI CTCTTC 3 cut(s) 183, 570, 873
Ecl136II GAGCTC 1 cut(s) 424
Eco130I CCWWGG 2 cut(s) 149, 282
Eco24I GRGCYC 1 cut(s) 426
Eco53kI GAGCTC 1 cut(s) 424
Eco57I CTGAAG 2 cut(s) 759, 1428
Eco81I CCTNAGG 1 cut(s) 414
Eco88I CYCGRG 1 cut(s) 425
EcoICRI GAGCTC 1 cut(s) 424
EcoRII CCWGG 2 cut(s) 879, 1389
EcoT14I CCWWGG 2 cut(s) 149, 282
EcoT38I GRGCYC 1 cut(s) 426
ErhI CCWWGG 2 cut(s) 149, 282
Esp3I CGTCTC 1 cut(s) 422
FaeI CATG 8 cut(s) 153, 275, 653, 811, 849, 1193, 1211, 1380
FaqI GGGAC 3 cut(s) 532, 899, 1153
FatI CATG 8 cut(s) 149, 271, 649, 807, 845, 1189, 1207, 1376
FauI CCCGC 1 cut(s) 169
FbaI TGATCA 2 cut(s) 979, 1186
Fnu4HI GCNGC 2 cut(s) 581, 1039
FriOI GRGCYC 1 cut(s) 426
Fsp4HI GCNGC 2 cut(s) 581, 1039
FspBI CTAG 3 cut(s) 344, 584, 1445
GluI GCNGC 2 cut(s) 581, 1039
GsaI CCCAGC 1 cut(s) 1079
HaeIII GGCC 1 cut(s) 759
Hin1II CATG 8 cut(s) 153, 275, 653, 811, 849, 1193, 1211, 1380
HinfI GANTC 8 cut(s) 677, 1001, 1148, 1277, 1349, 1412, 1423, 1436
HphI GGTGA 3 cut(s) 806, 850, 1050
Hpy166II GTNNAC 3 cut(s) 589, 797, 1342
Hpy188I TCNGA 7 cut(s) 124, 574, 778, 943, 1167, 1292, 1408
Hpy188III TCNNGA 9 cut(s) 413, 427, 479, 548, 650, 875, 968, 998, 1190
Hpy8I GTNNAC 3 cut(s) 589, 797, 1342
HpyAV CCTTC 3 cut(s) 253, 1437, 1459
HpyCH4III ACNGT 2 cut(s) 497, 1109
HpyCH4IV ACGT 2 cut(s) 542, 963
HpyCH4V TGCA 8 cut(s) 397, 533, 845, 932, 1116, 1133, 1283, 1303
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
HpyF3I CTNAG 6 cut(s) 414, 420, 436, 800, 1157, 1218
HpySE526I ACGT 2 cut(s) 542, 963
Hsp92II CATG 8 cut(s) 153, 275, 653, 811, 849, 1193, 1211, 1380
Ksp22I TGATCA 2 cut(s) 979, 1186
Kzo9I GATC 7 cut(s) 64, 235, 752, 786, 979, 1084, 1186
LguI GCTCTTC 1 cut(s) 570
LweI GCATC 1 cut(s) 1285
MaeI CTAG 3 cut(s) 344, 584, 1445
MaeII ACGT 2 cut(s) 542, 963
MaeIII GTNAC 4 cut(s) 488, 734, 838, 1056
MalI GATC 7 cut(s) 66, 237, 754, 788, 981, 1086, 1188
MbiI CCGCTC 1 cut(s) 580
MboI GATC 7 cut(s) 64, 235, 752, 786, 979, 1084, 1186
MflI RGATCY 1 cut(s) 752
MhlI GDGCHC 1 cut(s) 426
MluCI AATT 4 cut(s) 77, 624, 653, 1173
MlyI GAGTC 2 cut(s) 686, 1430
MmeI TCCRAC 2 cut(s) 589, 1464
MseI TTAA 4 cut(s) 558, 905, 911, 1458
MslI CAYNNNNRTG 1 cut(s) 1308
MspR9I CCNGG 2 cut(s) 881, 1391
Mva1269I GAATGC 1 cut(s) 1118
MvaI CCWGG 2 cut(s) 881, 1391
MwoI GCNNNNNNNGC 1 cut(s) 240
NcoI CCATGG 1 cut(s) 149
NdeII GATC 7 cut(s) 64, 235, 752, 786, 979, 1084, 1186
NlaIII CATG 8 cut(s) 153, 275, 653, 811, 849, 1193, 1211, 1380
NmuCI GTSAC 2 cut(s) 838, 1056
NspI RCATGY 2 cut(s) 1211, 1380
PaeR7I CTCGAG 1 cut(s) 425
PagI TCATGA 2 cut(s) 649, 1189
PaqCI CACCTGC 1 cut(s) 826
PciI ACATGT 1 cut(s) 1376
PciSI GCTCTTC 1 cut(s) 570
PcsI WCGNNNNNNNCGW 1 cut(s) 367
PctI GAATGC 1 cut(s) 1118
PfeI GAWTC 6 cut(s) 1001, 1148, 1277, 1349, 1412, 1423
PkrI GCNGC 2 cut(s) 582, 1040
Ple19I CGATCG 1 cut(s) 238
PleI GAGTC 2 cut(s) 685, 1430
PpsI GAGTC 2 cut(s) 685, 1430
PscI ACATGT 1 cut(s) 1376
PsiI TTATAA 1 cut(s) 1308
Psp124BI GAGCTC 1 cut(s) 426
Psp6I CCWGG 2 cut(s) 879, 1389
PspFI CCCAGC 1 cut(s) 1075
PspGI CCWGG 2 cut(s) 879, 1389
PstI CTGCAG 1 cut(s) 1285
PsuI RGATCY 1 cut(s) 752
PvuI CGATCG 1 cut(s) 238
RsaI GTAC 3 cut(s) 224, 291, 1050
RsaNI GTAC 3 cut(s) 223, 290, 1049
RseI CAYNNNNRTG 1 cut(s) 1308
SacI GAGCTC 1 cut(s) 426
SapI GCTCTTC 1 cut(s) 570
SaqAI TTAA 4 cut(s) 558, 905, 911, 1458
SatI GCNGC 2 cut(s) 581, 1039
Sau3AI GATC 7 cut(s) 64, 235, 752, 786, 979, 1084, 1186
SchI GAGTC 2 cut(s) 686, 1430
ScrFI CCNGG 2 cut(s) 881, 1391
SduI GDGCHC 1 cut(s) 426
SfaNI GCATC 1 cut(s) 1285
SfcI CTRYAG 2 cut(s) 1236, 1281
Sfr274I CTCGAG 1 cut(s) 425
SlaI CTCGAG 1 cut(s) 425
SmiMI CAYNNNNRTG 1 cut(s) 1308
SmlI CTYRAG 2 cut(s) 425, 1019
SmoI CTYRAG 2 cut(s) 425, 1019
Sse9I AATT 4 cut(s) 77, 624, 653, 1173
SsiI CCGC 3 cut(s) 162, 580, 1039
SspMI CTAG 3 cut(s) 344, 584, 1445
SstI GAGCTC 1 cut(s) 426
StyD4I CCNGG 2 cut(s) 879, 1389
StyI CCWWGG 2 cut(s) 149, 282
TaaI ACNGT 2 cut(s) 497, 1109
TaiI ACGT 2 cut(s) 545, 966
TaqI TCGA 4 cut(s) 238, 426, 680, 785
TasI AATT 4 cut(s) 77, 624, 653, 1173
TatI WGTACW 1 cut(s) 222
TauI GCSGC 2 cut(s) 583, 1041
TfiI GAWTC 6 cut(s) 1001, 1148, 1277, 1349, 1412, 1423
Tru1I TTAA 4 cut(s) 558, 905, 911, 1458
Tru9I TTAA 4 cut(s) 558, 905, 911, 1458
TscAI CASTG 6 cut(s) 177, 190, 300, 471, 1114, 1425
TseFI GTSAC 2 cut(s) 838, 1056
Tsp45I GTSAC 2 cut(s) 838, 1056
TspDTI ATGAA 9 cut(s) 17, 59, 104, 106, 288, 666, 1140, 1326, 1341
TspGWI ACGGA 1 cut(s) 616
TspRI CASTG 6 cut(s) 177, 190, 300, 471, 1114, 1425
XapI RAATTY 2 cut(s) 77, 1173
XceI RCATGY 2 cut(s) 1211, 1380
XhoI CTCGAG 1 cut(s) 425
XspI CTAG 3 cut(s) 344, 584, 1445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.