AT3G48690

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000397
Physical Location & Seq
Reverse (-)
18037046 .. 18038234
1189 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48690.1

Sequence Viewer

Length: 975 bp
ATGGATTCCGAGATCGCCGTCGACTGCTCTCCATTGCTCAAAATCTACAAGAGTGGCCGCATCGAGCGACTCATGGGTGAAGCCACCGTCCCACCTTCTTCCGAACCACAAAACGGAGTCGTTTCCAAGGACGTTGTTTATTCTGCCGACAACAACCTATCCGTCCGTATTTACCTCCCGGAGAAAGCCGCCGCCGAGACCGACTCGAAACTCCCTCTCCTCGTTTACTTCCACGGTGGAGGATTCATCATTGAGACAGCTTTCTCTCCAACTTACCACACTTTCCTCACGACGTCTGTCTCTGCGTCGAACTGTGTAGCGGTCTCTGTTGATTACCGTCGTGCACCGGAGCATCCGATCTCCGTCCCGTTCGATGATTCTTGGACAGCTCTCAAATGGGTATTCACCCATATCACTGGATCTGGTCAAGAAGATTGGTTAAACAAACATGCTGACTTCAGCAGAGTGTTCCTCTCCGGAGACAGTGCAGGAGCAAACATCGTGCATCACATGGCGATGAGAGCTGCGAAAGAGAAACTCAGTCCTGGTTTGAACGATACAGGAATCTCTGGAATCATCTTGCTTCATCCTTACTTCTGGTCGAAAACACCAATCGACGAGAAGGATACGAAAGATGAAACGTTGAGGATGAAGATAGAGGCGTTTTGGATGATGGCAAGTCCTAATAGCAAAGATGGAACAGATGATCCGTTGCTCAACGTGGTGCAATCAGAGTCGGTGGATTTGTCTGGGTTGGGTTGTGGTAAGGTTTTGGTAATGGTGGCTGAGAAAGATGCGTTGGTGAGGCAGGGTTGGGGTTACGCGGCTAAGCTTGAGAAGTCTGGTTGGAAAGGAGAGGTTGAAGTGGTGGAGAGTGAAGGAGAAGATCATGTTTTTCATTTGTTGAAACCTGAATGTGATAATGCTATTGAAGTCATGCATAAATTCTCAGGGTTTATTAAGGGAGGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

324

Amino Acids

35.57

Weight (kDa)

5.23

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 28 - 178 8.4e-11 Carboxylesterase family
BD-FAE PF20434 57 - 180 2.6e-09 BD-FAE
Abhydrolase_3 PF07859 74 - 300 4.1e-58 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48690 AT3G48700
fragaria_vesca FvH4_2g06400 FvH4_2g06430 FvH4_2g06450 FvH4_2g06480 FvH4_2g06560
malus_domestica MD05G1076400.v1.1 MD05G1076500.v1.1 MD05G1078900.v1.1 MD05G1191000.v1.1 MD05G1191100.v1.1 MD08G1226300.v1.1 MD10G1091000.v1.1 MD10G1091200.v1.1 MD10G1091400.v1.1 MD10G1091600.v1.1 MD10G1091900.v1.1
prunus_persica Prupe.8G120800_v2.0.a1 Prupe.8G121100_v2.0.a1 Prupe.8G121200_v2.0.a1 Prupe.8G121300_v2.0.a1 Prupe.8G121400_v2.0.a1 Prupe.8G121500_v2.0.a1 Prupe.8G121600_v2.0.a1 Prupe.8G121700_v2.0.a1 Prupe.8G121900_v2.0.a1 Prupe.8G122000_v2.0.a1 Prupe.I000800_v2.0.a1
pyrus_communis pycom05g07040 pycom05g17560 pycom05g17680 pycom05g17760 pycom10g07450 pycom10g07470 pycom10g07550
rosa_chinensis RchiOBHm_Chr6g0258271 RchiOBHm_Chr6g0258281 RchiOBHm_Chr6g0258291 RchiOBHm_Chr6g0258311 RchiOBHm_Chr6g0258321 RchiOBHm_Chr6g0258501
rosa_laevigata RLG00000014606 RLG00000014621 RLG00000014622 RLG00000014624 RLG00000014625 RLG00000014627 RLG00000014629 RLG00000014633 RLG00000014635
rosa_multiflora Rmu_co8014592.1_g000001 Rmu_co8366243.1_g000001 Rmu_sc0001663.1_g000004 Rmu_sc0005877.1_g000001 Rmu_sc0005877.1_g000006 Rmu_sc0005877.1_g000007 Rmu_sc0007367.1_g000009 Rmu_sc0007367.1_g000019 Rmu_sc0010616.1_g000022 Rmu_sc0010616.1_g000023 Rmu_ssc0000213.1_g000009
rosa_roxburghii Rroxscaffold_178G00437230 Rroxscaffold_178G00437250 Rroxscaffold_178G00437280 Rroxscaffold_178G00437320 Rroxscaffold_178G00437340 Rroxscaffold_178G00437350 Rroxscaffold_178G00437480 Rroxscaffold_7G00205390 Rroxscaffold_7G00205410 Rroxscaffold_7G00205450 Rroxscaffold_7G00205490 Rroxscaffold_7G00205510 Rroxscaffold_7G00205520 Rroxscaffold_7G00205670 Rroxscaffold_7G00205730
rosa_rugosa Rorug05G0579800 Rorug05G0580500 Rorug05G0580600 Rorug05G0580700 Rorug05G0580900 Rorug05G0581000 Rorug05G0581900
rosa_samantha Rh6CG084800 Rh6CG085100 Rh6CG085200 Rh6CG085400 Rh6CG085500 Rh6CG085600 Rh6CG085700 Rh6CG086900
rosa_wichuraiana Rw6G008300 Rw6G008310 Rw6G008360 Rw6G008370 Rw6G008380 Rw6G008390 Rw6G008430 Rw6G008440 Rw6G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 296
AccI GTMKAC 1 cut(s) 21
AccII CGCG 1 cut(s) 824
AccIII TCCGGA 1 cut(s) 476
AciI CCGC 5 cut(s) 58, 189, 192, 320, 824
AclI AACGTT 1 cut(s) 641
AclWI GGATC 2 cut(s) 427, 701
AcoI YGGCCR 1 cut(s) 55
AcsI RAATTY 1 cut(s) 944
AcuI CTGAAG 1 cut(s) 442
AcyI GRCGYC 1 cut(s) 293
AfiI CCNNNNNNNGG 1 cut(s) 113
AgsI TTSAA 4 cut(s) 553, 863, 907, 932
AjnI CCWGG 1 cut(s) 544
AjuI GAANNNNNNNTTGG 2 cut(s) 782, 814
AloI GAACNNNNNNTCC 2 cut(s) 691, 723
AluBI AGCT 4 cut(s) 260, 389, 524, 832
AluI AGCT 4 cut(s) 260, 389, 524, 832
Alw21I GWGCWC 1 cut(s) 346
Alw26I GTCTC 5 cut(s) 191, 248, 304, 328, 474
Alw44I GTGCAC 1 cut(s) 342
AlwI GGATC 2 cut(s) 427, 701
Aor13HI TCCGGA 1 cut(s) 476
AoxI GGCC 1 cut(s) 55
ApaLI GTGCAC 1 cut(s) 342
ApeKI GCWGC 1 cut(s) 524
ApoI RAATTY 1 cut(s) 944
AsuC2I CCSGG 1 cut(s) 179
AsuHPI GGTGA 3 cut(s) 89, 397, 814
BaeGI GKGCMC 1 cut(s) 346
Bbv12I GWGCWC 1 cut(s) 346
BbvI GCAGC 1 cut(s) 511
BccI CCATC 2 cut(s) 667, 689
BceAI ACGGC 1 cut(s) 2
BciT130I CCWGG 1 cut(s) 546
BciVI GTATCC 1 cut(s) 619
BcnI CCSGG 1 cut(s) 179
BcoDI GTCTC 5 cut(s) 191, 248, 304, 328, 474
BfaI CTAG 1 cut(s) 973
BfuI GTATCC 1 cut(s) 619
BisI GCNGC 5 cut(s) 58, 189, 192, 525, 825
BlpI GCTNAGC 1 cut(s) 828
BlsI GCNGC 5 cut(s) 59, 190, 193, 526, 826
Bme1390I CCNGG 2 cut(s) 179, 546
BmrFI CCNGG 2 cut(s) 179, 546
BmsI GCATC 4 cut(s) 69, 361, 514, 784
BoxI GACNNNNGTC 1 cut(s) 296
BplI GAGNNNNNCTC 4 cut(s) 188, 220, 456, 488
Bpu1102I GCTNAGC 1 cut(s) 828
BpuEI CTTGAG 1 cut(s) 854
BpuMI CCSGG 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 293
BsaI GGTCTC 2 cut(s) 191, 328
BsaJI CCNNGG 2 cut(s) 126, 232
BsaWI WCCGGW 2 cut(s) 346, 476
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 421
Bse3DI GCAATG 1 cut(s) 32
BseAI TCCGGA 1 cut(s) 476
BseBI CCWGG 1 cut(s) 546
BseDI CCNNGG 2 cut(s) 126, 232
BseGI GGATG 4 cut(s) 352, 586, 654, 675
BseLI CCNNNNNNNGG 1 cut(s) 113
BseMI GCAATG 1 cut(s) 32
BseMII CTCAG 3 cut(s) 553, 777, 963
BseNI ACTGG 1 cut(s) 421
BseRI GAGGAG 1 cut(s) 209
BseSI GKGCMC 1 cut(s) 346
BseXI GCAGC 1 cut(s) 511
BsgI GTGCAG 1 cut(s) 507
Bsh1236I CGCG 1 cut(s) 824
BshFI GGCC 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 346
BsiSI CCGG 3 cut(s) 179, 347, 477
BslFI GGGAC 2 cut(s) 74, 350
BslI CCNNNNNNNGG 1 cut(s) 113
BsmAI GTCTC 5 cut(s) 191, 248, 304, 328, 474
BsmFI GGGAC 2 cut(s) 74, 350
BsnI GGCC 1 cut(s) 57
Bso31I GGTCTC 2 cut(s) 191, 328
Bsp1286I GDGCHC 1 cut(s) 346
Bsp13I TCCGGA 1 cut(s) 476
Bsp143I GATC 5 cut(s) 12, 357, 419, 706, 886
Bsp1720I GCTNAGC 1 cut(s) 828
BspACI CCGC 5 cut(s) 58, 189, 192, 320, 824
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 3 cut(s) 552, 778, 962
BspEI TCCGGA 1 cut(s) 476
BspFNI CGCG 1 cut(s) 824
BspPI GGATC 2 cut(s) 427, 701
BspTNI GGTCTC 2 cut(s) 191, 328
BsrDI GCAATG 1 cut(s) 32
BsrI ACTGG 1 cut(s) 421
BssECI CCNNGG 2 cut(s) 126, 232
BssMI GATC 5 cut(s) 12, 357, 419, 706, 886
BssNI GRCGYC 1 cut(s) 293
BssT1I CCWWGG 1 cut(s) 126
Bst2UI CCWGG 1 cut(s) 546
Bst4CI ACNGT 5 cut(s) 88, 236, 314, 338, 485
BstACI GRCGYC 1 cut(s) 293
BstDEI CTNAG 4 cut(s) 539, 786, 828, 949
BstDSI CCRYGG 1 cut(s) 232
BstF5I GGATG 4 cut(s) 352, 586, 654, 675
BstFNI CGCG 1 cut(s) 824
BstKTI GATC 5 cut(s) 15, 360, 422, 709, 889
BstMAI GTCTC 5 cut(s) 191, 248, 304, 328, 474
BstMBI GATC 5 cut(s) 12, 357, 419, 706, 886
BstMWI GCNNNNNNNGC 1 cut(s) 521
BstNI CCWGG 1 cut(s) 546
BstNSI RCATGY 1 cut(s) 452
BstPAI GACNNNNGTC 1 cut(s) 296
BstSCI CCNGG 2 cut(s) 177, 544
BstSLI GKGCMC 1 cut(s) 346
BstUI CGCG 1 cut(s) 824
BstV1I GCAGC 1 cut(s) 511
BstX2I RGATCY 1 cut(s) 419
BstXI CCANNNNNNTGG 1 cut(s) 416
BstYI RGATCY 1 cut(s) 419
BsuI GTATCC 1 cut(s) 619
BsuRI GGCC 1 cut(s) 57
BtgI CCRYGG 1 cut(s) 232
BtgZI GCGATG 1 cut(s) 530
BtsCI GGATG 4 cut(s) 352, 586, 654, 675
BtsIMutI CAGTG 2 cut(s) 414, 490
CseI GACGC 1 cut(s) 294
CviAII CATG 5 cut(s) 73, 449, 511, 890, 937
CviJI RGCY 9 cut(s) 57, 83, 188, 260, 389, 524, 785, 827, 832
CviKI_1 RGCY 9 cut(s) 57, 83, 188, 260, 389, 524, 785, 827, 832
DdeI CTNAG 4 cut(s) 539, 786, 828, 949
DpnI GATC 5 cut(s) 14, 359, 421, 708, 888
DpnII GATC 5 cut(s) 12, 357, 419, 706, 886
EaeI YGGCCR 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 126
Eco31I GGTCTC 2 cut(s) 191, 328
Eco57I CTGAAG 1 cut(s) 442
EcoRII CCWGG 1 cut(s) 544
EcoT14I CCWWGG 1 cut(s) 126
EcoT22I ATGCAT 1 cut(s) 942
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 5 cut(s) 76, 452, 514, 893, 940
FaiI YATR 7 cut(s) 74, 411, 450, 512, 891, 938, 942
FaqI GGGAC 2 cut(s) 74, 350
FatI CATG 5 cut(s) 72, 448, 510, 889, 936
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 5 cut(s) 58, 189, 192, 525, 825
FokI GGATG 4 cut(s) 339, 573, 661, 682
Fsp4HI GCNGC 5 cut(s) 58, 189, 192, 525, 825
FspBI CTAG 1 cut(s) 973
GluI GCNGC 5 cut(s) 58, 189, 192, 525, 825
HaeIII GGCC 1 cut(s) 57
HapII CCGG 3 cut(s) 179, 347, 477
HgaI GACGC 1 cut(s) 294
Hin1I GRCGYC 1 cut(s) 293
Hin1II CATG 5 cut(s) 76, 452, 514, 893, 940
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HindIII AAGCTT 1 cut(s) 830
HinfI GANTC 9 cut(s) 5, 69, 117, 203, 243, 377, 564, 573, 734
HpaII CCGG 3 cut(s) 179, 347, 477
HphI GGTGA 3 cut(s) 89, 397, 814
Hpy166II GTNNAC 3 cut(s) 22, 226, 344
Hpy188I TCNGA 4 cut(s) 10, 103, 357, 733
Hpy188III TCNNGA 4 cut(s) 289, 428, 477, 570
Hpy8I GTNNAC 3 cut(s) 22, 226, 344
Hpy99I CGWCG 5 cut(s) 23, 295, 310, 342, 620
HpyAV CCTTC 3 cut(s) 105, 616, 872
HpyCH4III ACNGT 5 cut(s) 88, 236, 314, 338, 485
HpyCH4IV ACGT 4 cut(s) 132, 293, 641, 720
HpyCH4V TGCA 5 cut(s) 344, 488, 505, 727, 940
HpyF10VI GCNNNNNNNGC 1 cut(s) 521
HpyF3I CTNAG 4 cut(s) 539, 786, 828, 949
HpySE526I ACGT 4 cut(s) 132, 293, 641, 720
Hsp92I GRCGYC 1 cut(s) 293
Hsp92II CATG 5 cut(s) 76, 452, 514, 893, 940
Kpn2I TCCGGA 1 cut(s) 476
Kzo9I GATC 5 cut(s) 12, 357, 419, 706, 886
LmnI GCTCC 2 cut(s) 349, 491
Lsp1109I GCAGC 1 cut(s) 511
LweI GCATC 4 cut(s) 69, 361, 514, 784
MaeI CTAG 1 cut(s) 973
MaeII ACGT 4 cut(s) 132, 293, 641, 720
MaeIII GTNAC 1 cut(s) 818
MalI GATC 5 cut(s) 14, 359, 421, 708, 888
MboI GATC 5 cut(s) 12, 357, 419, 706, 886
MboII GAAGA 4 cut(s) 90, 443, 664, 896
MflI RGATCY 1 cut(s) 419
MhlI GDGCHC 1 cut(s) 346
MluCI AATT 1 cut(s) 944
MlyI GAGTC 4 cut(s) 63, 126, 197, 743
MmeI TCCRAC 2 cut(s) 293, 827
Mph1103I ATGCAT 1 cut(s) 942
MroI TCCGGA 1 cut(s) 476
MseI TTAA 2 cut(s) 440, 960
MslI CAYNNNNRTG 1 cut(s) 515
MspI CCGG 3 cut(s) 179, 347, 477
MspR9I CCNGG 2 cut(s) 179, 546
MvaI CCWGG 1 cut(s) 546
MvnI CGCG 1 cut(s) 824
MwoI GCNNNNNNNGC 1 cut(s) 521
NciI CCSGG 1 cut(s) 179
NdeII GATC 5 cut(s) 12, 357, 419, 706, 886
NlaIII CATG 5 cut(s) 76, 452, 514, 893, 940
NmeAIII GCCGAG 1 cut(s) 220
NsiI ATGCAT 1 cut(s) 942
NspI RCATGY 1 cut(s) 452
PfeI GAWTC 5 cut(s) 5, 243, 377, 564, 573
PfoI TCCNGGA 1 cut(s) 177
PkrI GCNGC 5 cut(s) 59, 190, 193, 526, 826
PleI GAGTC 4 cut(s) 63, 125, 197, 742
PpsI GAGTC 4 cut(s) 63, 125, 197, 742
PshAI GACNNNNGTC 1 cut(s) 296
Psp1406I AACGTT 1 cut(s) 641
Psp6I CCWGG 1 cut(s) 544
PspGI CCWGG 1 cut(s) 544
PsuI RGATCY 1 cut(s) 419
RseI CAYNNNNRTG 1 cut(s) 515
SalI GTCGAC 1 cut(s) 20
SaqAI TTAA 2 cut(s) 440, 960
SatI GCNGC 5 cut(s) 58, 189, 192, 525, 825
Sau3AI GATC 5 cut(s) 12, 357, 419, 706, 886
SchI GAGTC 4 cut(s) 63, 126, 197, 743
ScrFI CCNGG 2 cut(s) 179, 546
SduI GDGCHC 1 cut(s) 346
SfaNI GCATC 4 cut(s) 69, 361, 514, 784
SmiMI CAYNNNNRTG 1 cut(s) 515
SmlI CTYRAG 1 cut(s) 833
SmoI CTYRAG 1 cut(s) 833
Sse9I AATT 1 cut(s) 944
SsiI CCGC 5 cut(s) 58, 189, 192, 320, 824
SspMI CTAG 1 cut(s) 973
StyD4I CCNGG 2 cut(s) 177, 544
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 5 cut(s) 88, 236, 314, 338, 485
TaiI ACGT 4 cut(s) 135, 296, 644, 723
TaqI TCGA 7 cut(s) 21, 63, 206, 308, 372, 602, 615
TaqII GACCGA 1 cut(s) 215
TasI AATT 1 cut(s) 944
TauI GCSGC 4 cut(s) 60, 191, 194, 827
TfiI GAWTC 5 cut(s) 5, 243, 377, 564, 573
Tru1I TTAA 2 cut(s) 440, 960
Tru9I TTAA 2 cut(s) 440, 960
TscAI CASTG 2 cut(s) 421, 490
TseI GCWGC 1 cut(s) 524
TspDTI ATGAA 5 cut(s) 235, 575, 651, 665, 887
TspGWI ACGGA 5 cut(s) 129, 151, 155, 352, 699
TspRI CASTG 2 cut(s) 421, 490
VneI GTGCAC 1 cut(s) 342
XapI RAATTY 1 cut(s) 944
XceI RCATGY 1 cut(s) 452
XmiI GTMKAC 1 cut(s) 21
XspI CTAG 1 cut(s) 973
ZraI GACGTC 1 cut(s) 294
Zsp2I ATGCAT 1 cut(s) 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.