RLG00000014606

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000397
Physical Location & Seq
Forward (+)
55385232 .. 55386149
918 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014606

Sequence Viewer

Length: 918 bp
ATGGACTCAGCAACCCCAAACGACCAAATAGCCTTCGAATTCCCTCCCCTCGGCATCCGACTCTACAAAGACGGACGCGCTGAACGACTGAAGGGCACCGAGACCGTCCCGCCCTCCACCGACCCGACTACCGGAGTCCAATCCAAAGACATCGTCCTCTCACCCGAGTCCGGACTCGCCGCCCGGATCTACCTCCCCAAACTTCCTTACCCGACCCAGAAACTCCCCTTCCTCCTCTACATTCACGGCGGTGGCTTCGTCATTGAATCCCCATACTCCCCTCTCTACCACAGCCACCTCAACTCCCTCACTGCCGAAGCAAACGTCGTCGCTTTATCCATCCACTACCGCCGCGCCCCGGAGCACCCTCTTCCCGCCGCTTTTGAAGATTCCTGGGCCGCATTGGAATGGGTCGCGGCCCATTCTAGCGGCAATGGGCCGGAAGCCTGGCTGAAGGAACACGCGGACTTTAACCGCGTGTTCCTAGCCGGAGACAGCGCCGGTGCCACTCTAGCGCACCACGTGGTGCGTCAGAGTGGAGTGGAGGGAGTTAGTGGGGTTAATATTGTGGGGGTTGTTTTGTTTCATCCGTATTTTCGGAACGAGGGGCCGGATAAGTTGTTGGAGGTGATATATCCGACGGGCGGTGGGTCGGAGGATCTGAAAGTGTACCCGGGAAAGGATCCGAAACTGGGGAGCTTGGGAGCTGGAAGAGTGTTGGTGTTTGTGGCGGAGAAGGATTTTCTGAAGGACAGGGGATGGAGTTATTATGAGGCGTTGAAGAAAAGTGGGTGGGGTGGAGTGGTGGAGATTGAGGAGACTGAAGGAGAAGATCATGTGTTTCATTTGTTCGATCCGAGCTGTGAGAAGGCTGTGAGCTTGGTGAAGAAGGTAGCCGCTTTCATGAATCAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

306

Amino Acids

33.29

Weight (kDa)

5.56

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 54 - 176 8e-08 Carboxylesterase family
BD-FAE PF20434 63 - 173 6.7e-12 BD-FAE
Abhydrolase_3 PF07859 78 - 282 1.9e-44 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48690 AT3G48700
fragaria_vesca FvH4_2g06400 FvH4_2g06430 FvH4_2g06450 FvH4_2g06480 FvH4_2g06560
malus_domestica MD05G1076400.v1.1 MD05G1076500.v1.1 MD05G1078900.v1.1 MD05G1191000.v1.1 MD05G1191100.v1.1 MD08G1226300.v1.1 MD10G1091000.v1.1 MD10G1091200.v1.1 MD10G1091400.v1.1 MD10G1091600.v1.1 MD10G1091900.v1.1
prunus_persica Prupe.8G120800_v2.0.a1 Prupe.8G121100_v2.0.a1 Prupe.8G121200_v2.0.a1 Prupe.8G121300_v2.0.a1 Prupe.8G121400_v2.0.a1 Prupe.8G121500_v2.0.a1 Prupe.8G121600_v2.0.a1 Prupe.8G121700_v2.0.a1 Prupe.8G121900_v2.0.a1 Prupe.8G122000_v2.0.a1 Prupe.I000800_v2.0.a1
pyrus_communis pycom05g07040 pycom05g17560 pycom05g17680 pycom05g17760 pycom10g07450 pycom10g07470 pycom10g07550
rosa_chinensis RchiOBHm_Chr6g0258271 RchiOBHm_Chr6g0258281 RchiOBHm_Chr6g0258291 RchiOBHm_Chr6g0258311 RchiOBHm_Chr6g0258321 RchiOBHm_Chr6g0258501
rosa_laevigata RLG00000014606 RLG00000014621 RLG00000014622 RLG00000014624 RLG00000014625 RLG00000014627 RLG00000014629 RLG00000014633 RLG00000014635
rosa_multiflora Rmu_co8014592.1_g000001 Rmu_co8366243.1_g000001 Rmu_sc0001663.1_g000004 Rmu_sc0005877.1_g000001 Rmu_sc0005877.1_g000006 Rmu_sc0005877.1_g000007 Rmu_sc0007367.1_g000009 Rmu_sc0007367.1_g000019 Rmu_sc0010616.1_g000022 Rmu_sc0010616.1_g000023 Rmu_ssc0000213.1_g000009
rosa_roxburghii Rroxscaffold_178G00437230 Rroxscaffold_178G00437250 Rroxscaffold_178G00437280 Rroxscaffold_178G00437320 Rroxscaffold_178G00437340 Rroxscaffold_178G00437350 Rroxscaffold_178G00437480 Rroxscaffold_7G00205390 Rroxscaffold_7G00205410 Rroxscaffold_7G00205450 Rroxscaffold_7G00205490 Rroxscaffold_7G00205510 Rroxscaffold_7G00205520 Rroxscaffold_7G00205670 Rroxscaffold_7G00205730
rosa_rugosa Rorug05G0579800 Rorug05G0580500 Rorug05G0580600 Rorug05G0580700 Rorug05G0580900 Rorug05G0581000 Rorug05G0581900
rosa_samantha Rh6CG084800 Rh6CG085100 Rh6CG085200 Rh6CG085400 Rh6CG085500 Rh6CG085600 Rh6CG085700 Rh6CG086900
rosa_wichuraiana Rw6G008300 Rw6G008310 Rw6G008360 Rw6G008370 Rw6G008380 Rw6G008390 Rw6G008430 Rw6G008440 Rw6G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 95, 503
AccII CGCG 5 cut(s) 78, 354, 416, 464, 477
AccIII TCCGGA 1 cut(s) 170
AclWI GGATC 5 cut(s) 194, 666, 677, 690, 848
AcsI RAATTY 1 cut(s) 38
AcuI CTGAAG 4 cut(s) 110, 473, 767, 843
AcvI CACGTG 1 cut(s) 523
AdeI CACNNNGTG 2 cut(s) 523, 526
AfaI GTAC 1 cut(s) 671
AfiI CCNNNNNNNGG 7 cut(s) 50, 131, 170, 358, 644, 679, 692
AgsI TTSAA 3 cut(s) 266, 386, 781
AjnI CCWGG 2 cut(s) 392, 446
AleI CACNNNNGTG 1 cut(s) 249
AluBI AGCT 4 cut(s) 699, 707, 861, 879
AluI AGCT 4 cut(s) 699, 707, 861, 879
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 3 cut(s) 95, 486, 812
AlwI GGATC 5 cut(s) 194, 666, 677, 690, 848
Ama87I CYCGRG 2 cut(s) 164, 673
Aor13HI TCCGGA 1 cut(s) 170
AoxI GGCC 4 cut(s) 396, 417, 437, 608
ApoI RAATTY 1 cut(s) 38
ArsI GACNNNNNNTTYG 4 cut(s) 138, 170, 309, 341
AspLEI GCGC 4 cut(s) 80, 356, 500, 517
AspS9I GGNCC 4 cut(s) 396, 418, 437, 608
AsuC2I CCSGG 4 cut(s) 184, 359, 674, 675
AsuHPI GGTGA 3 cut(s) 153, 640, 895
AsuII TTCGAA 1 cut(s) 36
AvaI CYCGRG 2 cut(s) 164, 673
BaeGI GKGCMC 1 cut(s) 98
BamHI GGATCC 1 cut(s) 682
BanI GGYRCC 2 cut(s) 95, 503
BbrPI CACGTG 1 cut(s) 523
Bbv12I GWGCWC 1 cut(s) 366
BccI CCATC 2 cut(s) 347, 753
BceAI ACGGC 1 cut(s) 262
BciT130I CCWGG 2 cut(s) 394, 448
BcnI CCSGG 4 cut(s) 184, 359, 674, 675
BcoDI GTCTC 3 cut(s) 95, 486, 812
BfaI CTAG 3 cut(s) 426, 485, 512
BfoI RGCGCY 1 cut(s) 501
BisI GCNGC 7 cut(s) 180, 352, 378, 399, 417, 430, 897
BlsI GCNGC 7 cut(s) 181, 353, 379, 400, 418, 431, 898
Bme1390I CCNGG 6 cut(s) 184, 359, 394, 448, 674, 675
BmeT110I CYCGRG 2 cut(s) 164, 673
BmgT120I GGNCC 4 cut(s) 396, 418, 437, 608
BmiI GGNNCC 4 cut(s) 97, 505, 609, 684
BmrFI CCNGG 6 cut(s) 184, 359, 394, 448, 674, 675
BmrI ACTGGG 1 cut(s) 701
BmsI GCATC 1 cut(s) 63
BmuI ACTGGG 1 cut(s) 701
Bpu14I TTCGAA 1 cut(s) 36
BpuMI CCSGG 4 cut(s) 184, 359, 674, 675
BsaAI YACGTR 1 cut(s) 523
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 4 cut(s) 49, 357, 393, 673
BsaWI WCCGGW 2 cut(s) 131, 170
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 7 cut(s) 50, 131, 170, 358, 644, 679, 692
Bse118I RCCGGY 1 cut(s) 500
Bse1I ACTGG 1 cut(s) 696
Bse3DI GCAATG 1 cut(s) 439
BseAI TCCGGA 1 cut(s) 170
BseBI CCWGG 2 cut(s) 394, 448
BseDI CCNNGG 4 cut(s) 49, 357, 393, 673
BseGI GGATG 4 cut(s) 54, 339, 586, 764
BseLI CCNNNNNNNGG 7 cut(s) 50, 131, 170, 358, 644, 679, 692
BseMI GCAATG 1 cut(s) 439
BseMII CTCAG 1 cut(s) 21
BseNI ACTGG 1 cut(s) 696
BseRI GAGGAG 2 cut(s) 224, 830
BseSI GKGCMC 1 cut(s) 98
Bsh1236I CGCG 5 cut(s) 78, 354, 416, 464, 477
BshFI GGCC 4 cut(s) 398, 419, 439, 610
BshNI GGYRCC 2 cut(s) 95, 503
BsiHKAI GWGCWC 1 cut(s) 366
BsiHKCI CYCGRG 2 cut(s) 164, 673
BsiSI CCGG 9 cut(s) 132, 171, 184, 359, 440, 489, 501, 611, 674
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 7 cut(s) 50, 131, 170, 358, 644, 679, 692
BsmAI GTCTC 3 cut(s) 95, 486, 812
BsmFI GGGAC 1 cut(s) 92
BsnI GGCC 4 cut(s) 398, 419, 439, 610
Bso31I GGTCTC 1 cut(s) 95
BsoBI CYCGRG 2 cut(s) 164, 673
Bsp119I TTCGAA 1 cut(s) 36
Bsp1286I GDGCHC 2 cut(s) 98, 366
Bsp13I TCCGGA 1 cut(s) 170
Bsp143I GATC 5 cut(s) 186, 658, 682, 832, 853
BspANI GGCC 4 cut(s) 398, 419, 439, 610
BspCNI CTCAG 1 cut(s) 20
BspEI TCCGGA 1 cut(s) 170
BspFNI CGCG 5 cut(s) 78, 354, 416, 464, 477
BspHI TCATGA 1 cut(s) 903
BspLI GGNNCC 4 cut(s) 97, 505, 609, 684
BspPI GGATC 5 cut(s) 194, 666, 677, 690, 848
BspT104I TTCGAA 1 cut(s) 36
BspT107I GGYRCC 2 cut(s) 95, 503
BspTNI GGTCTC 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 439
BsrFI RCCGGY 1 cut(s) 500
BsrI ACTGG 1 cut(s) 696
BssAI RCCGGY 1 cut(s) 500
BssECI CCNNGG 4 cut(s) 49, 357, 393, 673
BssMI GATC 5 cut(s) 186, 658, 682, 832, 853
Bst2UI CCWGG 2 cut(s) 394, 448
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 2 cut(s) 375, 706
BstBAI YACGTR 1 cut(s) 523
BstBI TTCGAA 1 cut(s) 36
BstDEI CTNAG 1 cut(s) 7
BstF5I GGATG 4 cut(s) 54, 339, 586, 764
BstFNI CGCG 5 cut(s) 78, 354, 416, 464, 477
BstH2I RGCGCY 1 cut(s) 501
BstHHI GCGC 4 cut(s) 80, 356, 500, 517
BstKTI GATC 5 cut(s) 189, 661, 685, 835, 856
BstMAI GTCTC 3 cut(s) 95, 486, 812
BstMBI GATC 5 cut(s) 186, 658, 682, 832, 853
BstMWI GCNNNNNNNGC 1 cut(s) 512
BstNI CCWGG 2 cut(s) 394, 448
BstSCI CCNGG 6 cut(s) 182, 357, 392, 446, 672, 673
BstSLI GKGCMC 1 cut(s) 98
BstUI CGCG 5 cut(s) 78, 354, 416, 464, 477
BstX2I RGATCY 3 cut(s) 186, 658, 682
BstYI RGATCY 3 cut(s) 186, 658, 682
BsuRI GGCC 4 cut(s) 398, 419, 439, 610
BtsCI GGATG 4 cut(s) 54, 339, 586, 764
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 1 cut(s) 309
CciI TCATGA 1 cut(s) 903
CfoI GCGC 4 cut(s) 80, 356, 500, 517
Cfr10I RCCGGY 1 cut(s) 500
Cfr13I GGNCC 4 cut(s) 396, 418, 437, 608
Cfr9I CCCGGG 1 cut(s) 673
CseI GACGC 2 cut(s) 84, 518
Csp6I GTAC 1 cut(s) 670
CviAII CATG 2 cut(s) 836, 904
CviQI GTAC 1 cut(s) 670
DdeI CTNAG 1 cut(s) 7
DpnI GATC 5 cut(s) 188, 660, 684, 834, 855
DpnII GATC 5 cut(s) 186, 658, 682, 832, 853
DraIII CACNNNGTG 2 cut(s) 523, 526
Eam1104I CTCTTC 2 cut(s) 375, 706
EarI CTCTTC 2 cut(s) 375, 706
EciI GGCGGA 1 cut(s) 746
Eco31I GGTCTC 1 cut(s) 95
Eco57I CTGAAG 4 cut(s) 110, 473, 767, 843
Eco72I CACGTG 1 cut(s) 523
Eco88I CYCGRG 2 cut(s) 164, 673
EcoRI GAATTC 1 cut(s) 38
EcoRII CCWGG 2 cut(s) 392, 446
FaeI CATG 2 cut(s) 839, 907
FaiI YATR 5 cut(s) 274, 634, 771, 837, 905
FaqI GGGAC 1 cut(s) 92
FatI CATG 2 cut(s) 835, 903
FauI CCCGC 2 cut(s) 117, 382
Fnu4HI GCNGC 7 cut(s) 180, 352, 378, 399, 417, 430, 897
FokI GGATG 4 cut(s) 41, 326, 573, 771
Fsp4HI GCNGC 7 cut(s) 180, 352, 378, 399, 417, 430, 897
FspBI CTAG 3 cut(s) 426, 485, 512
GlaI GCGC 4 cut(s) 79, 355, 499, 516
GluI GCNGC 7 cut(s) 180, 352, 378, 399, 417, 430, 897
HaeII RGCGCY 1 cut(s) 501
HaeIII GGCC 4 cut(s) 398, 419, 439, 610
HapII CCGG 9 cut(s) 132, 171, 184, 359, 440, 489, 501, 611, 674
HgaI GACGC 2 cut(s) 84, 518
HhaI GCGC 4 cut(s) 80, 356, 500, 517
Hin1II CATG 2 cut(s) 839, 907
Hin6I GCGC 4 cut(s) 78, 354, 498, 515
HinP1I GCGC 4 cut(s) 78, 354, 498, 515
HinfI GANTC 8 cut(s) 5, 60, 135, 167, 174, 266, 389, 907
HpaII CCGG 9 cut(s) 132, 171, 184, 359, 440, 489, 501, 611, 674
HphI GGTGA 3 cut(s) 153, 640, 895
Hpy166II GTNNAC 1 cut(s) 670
Hpy188I TCNGA 9 cut(s) 59, 534, 600, 639, 655, 663, 687, 747, 858
Hpy188III TCNNGA 3 cut(s) 171, 904, 911
Hpy8I GTNNAC 1 cut(s) 670
Hpy99I CGWCG 3 cut(s) 329, 332, 643
HpyAV CCTTC 9 cut(s) 43, 85, 238, 448, 730, 742, 818, 862, 883
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 2 cut(s) 324, 522
HpyF10VI GCNNNNNNNGC 1 cut(s) 512
HpyF3I CTNAG 1 cut(s) 7
HpySE526I ACGT 2 cut(s) 324, 522
Hsp92II CATG 2 cut(s) 839, 907
HspAI GCGC 4 cut(s) 78, 354, 498, 515
Kpn2I TCCGGA 1 cut(s) 170
Kzo9I GATC 5 cut(s) 186, 658, 682, 832, 853
LmnI GCTCC 3 cut(s) 361, 696, 704
LweI GCATC 1 cut(s) 63
MaeI CTAG 3 cut(s) 426, 485, 512
MaeII ACGT 2 cut(s) 324, 522
MalI GATC 5 cut(s) 188, 660, 684, 834, 855
MboI GATC 5 cut(s) 186, 658, 682, 832, 853
MboII GAAGA 6 cut(s) 362, 398, 723, 793, 842, 898
MflI RGATCY 3 cut(s) 186, 658, 682
MhlI GDGCHC 2 cut(s) 98, 366
MluCI AATT 1 cut(s) 38
MlyI GAGTC 4 cut(s) 54, 144, 168, 176
MmeI TCCRAC 4 cut(s) 82, 603, 633, 662
MroI TCCGGA 1 cut(s) 170
MseI TTAA 2 cut(s) 471, 561
MslI CAYNNNNRTG 2 cut(s) 249, 406
MspI CCGG 9 cut(s) 132, 171, 184, 359, 440, 489, 501, 611, 674
MspR9I CCNGG 6 cut(s) 184, 359, 394, 448, 674, 675
MvaI CCWGG 2 cut(s) 394, 448
MvnI CGCG 5 cut(s) 78, 354, 416, 464, 477
MwoI GCNNNNNNNGC 1 cut(s) 512
NciI CCSGG 4 cut(s) 184, 359, 674, 675
NdeII GATC 5 cut(s) 186, 658, 682, 832, 853
NlaIII CATG 2 cut(s) 839, 907
NlaIV GGNNCC 4 cut(s) 97, 505, 609, 684
NmeAIII GCCGAG 1 cut(s) 30
NspV TTCGAA 1 cut(s) 36
OliI CACNNNNGTG 1 cut(s) 249
PagI TCATGA 1 cut(s) 903
PcsI WCGNNNNNNNCGW 1 cut(s) 82
PfeI GAWTC 3 cut(s) 266, 389, 907
PflFI GACNNNGTC 1 cut(s) 152
PkrI GCNGC 7 cut(s) 181, 353, 379, 400, 418, 431, 898
PleI GAGTC 4 cut(s) 54, 143, 168, 175
PmaCI CACGTG 1 cut(s) 523
PmlI CACGTG 1 cut(s) 523
PpsI GAGTC 4 cut(s) 54, 143, 168, 175
Ppu21I YACGTR 1 cut(s) 523
Psp6I CCWGG 2 cut(s) 392, 446
PspCI CACGTG 1 cut(s) 523
PspGI CCWGG 2 cut(s) 392, 446
PspN4I GGNNCC 4 cut(s) 97, 505, 609, 684
PspPI GGNCC 4 cut(s) 396, 418, 437, 608
PsuI RGATCY 3 cut(s) 186, 658, 682
PsyI GACNNNGTC 1 cut(s) 152
RsaI GTAC 1 cut(s) 671
RsaNI GTAC 1 cut(s) 670
RseI CAYNNNNRTG 2 cut(s) 249, 406
SaqAI TTAA 2 cut(s) 471, 561
SatI GCNGC 7 cut(s) 180, 352, 378, 399, 417, 430, 897
Sau3AI GATC 5 cut(s) 186, 658, 682, 832, 853
Sau96I GGNCC 4 cut(s) 396, 418, 437, 608
SchI GAGTC 4 cut(s) 54, 144, 168, 176
ScrFI CCNGG 6 cut(s) 184, 359, 394, 448, 674, 675
SduI GDGCHC 2 cut(s) 98, 366
SfaNI GCATC 1 cut(s) 63
SfuI TTCGAA 1 cut(s) 36
SgrAI CRCCGGYG 1 cut(s) 500
SmaI CCCGGG 1 cut(s) 675
SmiMI CAYNNNNRTG 2 cut(s) 249, 406
Sse9I AATT 1 cut(s) 38
SspI AATATT 1 cut(s) 565
SspMI CTAG 3 cut(s) 426, 485, 512
StyD4I CCNGG 6 cut(s) 182, 357, 392, 446, 672, 673
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 2 cut(s) 327, 525
TaqI TCGA 2 cut(s) 36, 852
TasI AATT 1 cut(s) 38
TauI GCSGC 7 cut(s) 182, 354, 380, 401, 419, 432, 899
TfiI GAWTC 3 cut(s) 266, 389, 907
Tru1I TTAA 2 cut(s) 471, 561
Tru9I TTAA 2 cut(s) 471, 561
TscAI CASTG 1 cut(s) 316
TspDTI ATGAA 3 cut(s) 575, 833, 892
TspGWI ACGGA 2 cut(s) 87, 579
TspMI CCCGGG 1 cut(s) 673
TspRI CASTG 1 cut(s) 316
Tth111I GACNNNGTC 1 cut(s) 152
XapI RAATTY 1 cut(s) 38
XmaI CCCGGG 1 cut(s) 673
XspI CTAG 3 cut(s) 426, 485, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.