FvH4_2g06560

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000397
Physical Location & Seq
Reverse (-)
5444314 .. 5445228
915 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g06560.t1

Sequence Viewer

Length: 915 bp
ATGGACCCAGCAACCCAAAACGACGAGATAGCCTTCGAGTTCCCACCTCTCTTCCGTCTTTACAAAGACGGACGAGCCGACCGCCTCAAGGGAAACGAGACCGTCCCGCCCTCCACTGACCCGACCACCGGAGTCCAATCCAAAGACATCGTCCTCTCACCCGAATCCGGCCTCTCCGCCCGCATCTACCTCCCCAAACTCCCCGACCCGACCCGGAAACTCCCCTTCCTCCTCTACATCCACGGCGGCGGTTTCGTCATCGAGTCCCCATCCTCCCCTGTCTACCACAGCCACGTCAGCTCCCTCGCTGCCCAAGCAAACGTCGTCGCTTTGTCCATCCACTACCGCCGCGCCCCGGAGCACCCTCTTCCCGCCGCTTTTGAAGACAGCTGGGCCGCATTCCAATGGGCCGCGACCCATTCCACTGGCGGCGGGCCAGAATCCTGGCTGAATGAACACGCGGACTTCAACCGCGTGTTCGTGGCCGGAGACAGCGCCGGGTCCACCCTGGCGCACCATGTCGTGCGCCAGAGTGGAGTGGAGGGAGTCAGCGGGGTTAATACTGTGGGGGTGGTTTTGTTTCATCCGTATTTCCGGAATGAAGTGCCGGATAAGTTGTTGGAGGTGATATATCCGACGGGAGGAGGGTTAGAGGATCCGAAAATGTATCCGGGAAATGATCCGAGACTGGGGAGCTTGGGAGCTGGGAGAGTGTTGGTGTTTGTGGCGGAGAAGGATTTCTTGAAGGACAGGGGATGGAGTTATTATGAGGCGTTGAAGAAGAGTGGGTGGAGCGGAGTTGTGGAGATTGAGGAGACTGAAGGAGAAGATCATGTGTTTCATTTGTTTGATCCGAGCTGCGAGAAGGCTGTGAGCTTGGTGAAGAAGGTAGCTGCTTTCATGAATCAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

305

Amino Acids

33.26

Weight (kDa)

5.46

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 53 - 116 1.7e-07 Carboxylesterase family
BD-FAE PF20434 62 - 172 1.1e-09 BD-FAE
Abhydrolase_3 PF07859 77 - 281 1.8e-43 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48690 AT3G48700
fragaria_vesca FvH4_2g06400 FvH4_2g06430 FvH4_2g06450 FvH4_2g06480 FvH4_2g06560
malus_domestica MD05G1076400.v1.1 MD05G1076500.v1.1 MD05G1078900.v1.1 MD05G1191000.v1.1 MD05G1191100.v1.1 MD08G1226300.v1.1 MD10G1091000.v1.1 MD10G1091200.v1.1 MD10G1091400.v1.1 MD10G1091600.v1.1 MD10G1091900.v1.1
prunus_persica Prupe.8G120800_v2.0.a1 Prupe.8G121100_v2.0.a1 Prupe.8G121200_v2.0.a1 Prupe.8G121300_v2.0.a1 Prupe.8G121400_v2.0.a1 Prupe.8G121500_v2.0.a1 Prupe.8G121600_v2.0.a1 Prupe.8G121700_v2.0.a1 Prupe.8G121900_v2.0.a1 Prupe.8G122000_v2.0.a1 Prupe.I000800_v2.0.a1
pyrus_communis pycom05g07040 pycom05g17560 pycom05g17680 pycom05g17760 pycom10g07450 pycom10g07470 pycom10g07550
rosa_chinensis RchiOBHm_Chr6g0258271 RchiOBHm_Chr6g0258281 RchiOBHm_Chr6g0258291 RchiOBHm_Chr6g0258311 RchiOBHm_Chr6g0258321 RchiOBHm_Chr6g0258501
rosa_laevigata RLG00000014606 RLG00000014621 RLG00000014622 RLG00000014624 RLG00000014625 RLG00000014627 RLG00000014629 RLG00000014633 RLG00000014635
rosa_multiflora Rmu_co8014592.1_g000001 Rmu_co8366243.1_g000001 Rmu_sc0001663.1_g000004 Rmu_sc0005877.1_g000001 Rmu_sc0005877.1_g000006 Rmu_sc0005877.1_g000007 Rmu_sc0007367.1_g000009 Rmu_sc0007367.1_g000019 Rmu_sc0010616.1_g000022 Rmu_sc0010616.1_g000023 Rmu_ssc0000213.1_g000009
rosa_roxburghii Rroxscaffold_178G00437230 Rroxscaffold_178G00437250 Rroxscaffold_178G00437280 Rroxscaffold_178G00437320 Rroxscaffold_178G00437340 Rroxscaffold_178G00437350 Rroxscaffold_178G00437480 Rroxscaffold_7G00205390 Rroxscaffold_7G00205410 Rroxscaffold_7G00205450 Rroxscaffold_7G00205490 Rroxscaffold_7G00205510 Rroxscaffold_7G00205520 Rroxscaffold_7G00205670 Rroxscaffold_7G00205730
rosa_rugosa Rorug05G0579800 Rorug05G0580500 Rorug05G0580600 Rorug05G0580700 Rorug05G0580900 Rorug05G0581000 Rorug05G0581900
rosa_samantha Rh6CG084800 Rh6CG085100 Rh6CG085200 Rh6CG085400 Rh6CG085500 Rh6CG085600 Rh6CG085700 Rh6CG086900
rosa_wichuraiana Rw6G008300 Rw6G008310 Rw6G008360 Rw6G008370 Rw6G008380 Rw6G008390 Rw6G008430 Rw6G008440 Rw6G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 795
AccI GTMKAC 1 cut(s) 282
AccII CGCG 4 cut(s) 351, 413, 461, 474
AccIII TCCGGA 1 cut(s) 594
AclWI GGATC 4 cut(s) 650, 663, 674, 845
AcoI YGGCCR 1 cut(s) 483
AcuI CTGAAG 1 cut(s) 840
AfiI CCNNNNNNNGG 6 cut(s) 88, 128, 167, 355, 641, 689
AgsI TTSAA 4 cut(s) 383, 469, 745, 778
AjiI CACGTC 1 cut(s) 295
AjnI CCWGG 2 cut(s) 443, 507
AluBI AGCT 7 cut(s) 300, 390, 696, 704, 858, 876, 893
AluI AGCT 7 cut(s) 300, 390, 696, 704, 858, 876, 893
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 4 cut(s) 92, 483, 679, 809
AlwI GGATC 4 cut(s) 650, 663, 674, 845
Aor13HI TCCGGA 1 cut(s) 594
AoxI GGCC 5 cut(s) 169, 393, 408, 434, 483
ApeKI GCWGC 3 cut(s) 308, 858, 893
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
Asp700I GAANNNNTTC 1 cut(s) 737
AspLEI GCGC 4 cut(s) 353, 497, 514, 528
AspS9I GGNCC 5 cut(s) 4, 393, 408, 434, 501
AsuC2I CCSGG 4 cut(s) 214, 356, 499, 672
AsuHPI GGTGA 3 cut(s) 150, 637, 892
AvaII GGWCC 2 cut(s) 4, 501
BamHI GGATCC 1 cut(s) 655
BbsI GAAGAC 1 cut(s) 390
Bbv12I GWGCWC 1 cut(s) 363
BbvI GCAGC 3 cut(s) 295, 845, 880
BccI CCATC 3 cut(s) 277, 344, 750
BceAI ACGGC 1 cut(s) 259
BciT130I CCWGG 2 cut(s) 445, 509
BciVI GTATCC 1 cut(s) 678
BcnI CCSGG 4 cut(s) 214, 356, 499, 672
BcoDI GTCTC 4 cut(s) 92, 483, 679, 809
BfoI RGCGCY 1 cut(s) 498
BfuI GTATCC 1 cut(s) 678
BisI GCNGC 9 cut(s) 247, 309, 349, 375, 396, 411, 430, 859, 894
BlsI GCNGC 9 cut(s) 248, 310, 350, 376, 397, 412, 431, 860, 895
Bme1390I CCNGG 6 cut(s) 214, 356, 445, 499, 509, 672
Bme18I GGWCC 2 cut(s) 4, 501
BmgBI CACGTC 1 cut(s) 295
BmgT120I GGNCC 5 cut(s) 4, 393, 408, 434, 501
BmiI GGNNCC 3 cut(s) 6, 502, 657
BmrFI CCNGG 6 cut(s) 214, 356, 445, 499, 509, 672
BmrI ACTGGG 1 cut(s) 698
BmsI GCATC 1 cut(s) 192
BmuI ACTGGG 1 cut(s) 698
BpiI GAAGAC 1 cut(s) 390
BpuEI CTTGAG 1 cut(s) 71
BpuMI CCSGG 4 cut(s) 214, 356, 499, 672
BsaI GGTCTC 1 cut(s) 92
BsaJI CCNNGG 3 cut(s) 241, 354, 507
BsaWI WCCGGW 2 cut(s) 128, 594
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 6 cut(s) 88, 128, 167, 355, 641, 689
Bse1I ACTGG 2 cut(s) 430, 693
BseAI TCCGGA 1 cut(s) 594
BseBI CCWGG 2 cut(s) 445, 509
BseDI CCNNGG 3 cut(s) 241, 354, 507
BseGI GGATG 5 cut(s) 237, 269, 336, 583, 761
BseLI CCNNNNNNNGG 6 cut(s) 88, 128, 167, 355, 641, 689
BseNI ACTGG 2 cut(s) 430, 693
BseRI GAGGAG 3 cut(s) 221, 657, 827
BseXI GCAGC 3 cut(s) 295, 845, 880
BseYI CCCAGC 3 cut(s) 7, 390, 704
Bsh1236I CGCG 4 cut(s) 351, 413, 461, 474
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 5 cut(s) 171, 395, 410, 436, 485
BsiEI CGRYCG 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 363
BsiSI CCGG 9 cut(s) 129, 168, 214, 356, 486, 498, 595, 608, 671
BslFI GGGAC 2 cut(s) 89, 250
BslI CCNNNNNNNGG 6 cut(s) 88, 128, 167, 355, 641, 689
BsmAI GTCTC 4 cut(s) 92, 483, 679, 809
BsmFI GGGAC 2 cut(s) 89, 250
BsmI GAATGC 1 cut(s) 398
BsnI GGCC 5 cut(s) 171, 395, 410, 436, 485
Bso31I GGTCTC 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 363
Bsp13I TCCGGA 1 cut(s) 594
Bsp143I GATC 4 cut(s) 655, 679, 829, 850
BspANI GGCC 5 cut(s) 171, 395, 410, 436, 485
BspEI TCCGGA 1 cut(s) 594
BspFNI CGCG 4 cut(s) 351, 413, 461, 474
BspHI TCATGA 1 cut(s) 900
BspLI GGNNCC 3 cut(s) 6, 502, 657
BspPI GGATC 4 cut(s) 650, 663, 674, 845
BspTNI GGTCTC 1 cut(s) 92
BsrBI CCGCTC 1 cut(s) 795
BsrI ACTGG 2 cut(s) 430, 693
BssECI CCNNGG 3 cut(s) 241, 354, 507
BssMI GATC 4 cut(s) 655, 679, 829, 850
Bst2UI CCWGG 2 cut(s) 445, 509
Bst4CI ACNGT 2 cut(s) 103, 565
Bst6I CTCTTC 3 cut(s) 56, 372, 776
BstC8I GCNNGC 2 cut(s) 181, 434
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 5 cut(s) 237, 269, 336, 583, 761
BstFNI CGCG 4 cut(s) 351, 413, 461, 474
BstH2I RGCGCY 1 cut(s) 498
BstHHI GCGC 4 cut(s) 353, 497, 514, 528
BstKTI GATC 4 cut(s) 658, 682, 832, 853
BstMAI GTCTC 4 cut(s) 92, 483, 679, 809
BstMBI GATC 4 cut(s) 655, 679, 829, 850
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 2 cut(s) 297, 314
BstNI CCWGG 2 cut(s) 445, 509
BstSCI CCNGG 6 cut(s) 212, 354, 443, 497, 507, 670
BstUI CGCG 4 cut(s) 351, 413, 461, 474
BstV1I GCAGC 3 cut(s) 295, 845, 880
BstV2I GAAGAC 1 cut(s) 390
BstX2I RGATCY 1 cut(s) 655
BstXI CCANNNNNNTGG 2 cut(s) 425, 444
BstYI RGATCY 1 cut(s) 655
BsuI GTATCC 1 cut(s) 678
BsuRI GGCC 5 cut(s) 171, 395, 410, 436, 485
BtgI CCRYGG 1 cut(s) 241
BtrI CACGTC 1 cut(s) 295
BtsCI GGATG 5 cut(s) 237, 269, 336, 583, 761
BtsIMutI CAGTG 2 cut(s) 114, 423
Cac8I GCNNGC 2 cut(s) 181, 434
CciI TCATGA 1 cut(s) 900
CfoI GCGC 4 cut(s) 353, 497, 514, 528
Cfr13I GGNCC 5 cut(s) 4, 393, 408, 434, 501
CviAII CATG 3 cut(s) 518, 833, 901
DpnI GATC 4 cut(s) 657, 681, 831, 852
DpnII GATC 4 cut(s) 655, 679, 829, 850
EaeI YGGCCR 1 cut(s) 483
Eam1104I CTCTTC 3 cut(s) 56, 372, 776
EarI CTCTTC 3 cut(s) 56, 372, 776
EciI GGCGGA 2 cut(s) 166, 743
Eco31I GGTCTC 1 cut(s) 92
Eco47I GGWCC 2 cut(s) 4, 501
Eco57I CTGAAG 1 cut(s) 840
EcoRII CCWGG 2 cut(s) 443, 507
FaeI CATG 3 cut(s) 521, 836, 904
FaiI YATR 5 cut(s) 519, 631, 768, 834, 902
FalI AAGNNNNNCTT 2 cut(s) 725, 757
FaqI GGGAC 2 cut(s) 89, 250
FatI CATG 3 cut(s) 517, 832, 900
FauI CCCGC 5 cut(s) 114, 188, 379, 425, 545
FblI GTMKAC 1 cut(s) 282
Fnu4HI GCNGC 9 cut(s) 247, 309, 349, 375, 396, 411, 430, 859, 894
FokI GGATG 5 cut(s) 224, 256, 323, 570, 768
Fsp4HI GCNGC 9 cut(s) 247, 309, 349, 375, 396, 411, 430, 859, 894
GlaI GCGC 4 cut(s) 352, 496, 513, 527
GluI GCNGC 9 cut(s) 247, 309, 349, 375, 396, 411, 430, 859, 894
GsaI CCCAGC 3 cut(s) 11, 394, 708
HaeII RGCGCY 1 cut(s) 498
HaeIII GGCC 5 cut(s) 171, 395, 410, 436, 485
HapII CCGG 9 cut(s) 129, 168, 214, 356, 486, 498, 595, 608, 671
HhaI GCGC 4 cut(s) 353, 497, 514, 528
Hin1II CATG 3 cut(s) 521, 836, 904
Hin6I GCGC 4 cut(s) 351, 495, 512, 526
HinP1I GCGC 4 cut(s) 351, 495, 512, 526
HinfI GANTC 6 cut(s) 132, 164, 263, 440, 546, 904
HpaII CCGG 9 cut(s) 129, 168, 214, 356, 486, 498, 595, 608, 671
HphI GGTGA 3 cut(s) 150, 637, 892
Hpy166II GTNNAC 2 cut(s) 283, 504
Hpy188I TCNGA 4 cut(s) 636, 660, 684, 855
Hpy188III TCNNGA 4 cut(s) 595, 742, 901, 908
Hpy8I GTNNAC 2 cut(s) 283, 504
Hpy99I CGWCG 4 cut(s) 26, 326, 329, 640
HpyAV CCTTC 7 cut(s) 43, 235, 727, 739, 815, 859, 880
HpyCH4III ACNGT 2 cut(s) 103, 565
HpyCH4IV ACGT 2 cut(s) 294, 321
HpyF10VI GCNNNNNNNGC 2 cut(s) 297, 314
HpySE526I ACGT 2 cut(s) 294, 321
Hsp92II CATG 3 cut(s) 521, 836, 904
HspAI GCGC 4 cut(s) 351, 495, 512, 526
Kpn2I TCCGGA 1 cut(s) 594
Kzo9I GATC 4 cut(s) 655, 679, 829, 850
LmnI GCTCC 5 cut(s) 305, 358, 693, 701, 792
Lsp1109I GCAGC 3 cut(s) 295, 845, 880
LweI GCATC 1 cut(s) 192
MaeII ACGT 2 cut(s) 294, 321
MalI GATC 4 cut(s) 657, 681, 831, 852
MbiI CCGCTC 1 cut(s) 795
MboI GATC 4 cut(s) 655, 679, 829, 850
MboII GAAGA 7 cut(s) 43, 359, 395, 790, 793, 839, 895
MflI RGATCY 1 cut(s) 655
MhlI GDGCHC 1 cut(s) 363
MlyI GAGTC 3 cut(s) 141, 272, 555
MmeI TCCRAC 2 cut(s) 600, 659
MroI TCCGGA 1 cut(s) 594
MroXI GAANNNNTTC 1 cut(s) 737
MseI TTAA 1 cut(s) 558
MslI CAYNNNNRTG 1 cut(s) 403
MspA1I CMGCKG 2 cut(s) 390, 552
MspI CCGG 9 cut(s) 129, 168, 214, 356, 486, 498, 595, 608, 671
MspR9I CCNGG 6 cut(s) 214, 356, 445, 499, 509, 672
Mva1269I GAATGC 1 cut(s) 398
MvaI CCWGG 2 cut(s) 445, 509
MvnI CGCG 4 cut(s) 351, 413, 461, 474
MwoI GCNNNNNNNGC 2 cut(s) 297, 314
NciI CCSGG 4 cut(s) 214, 356, 499, 672
NdeII GATC 4 cut(s) 655, 679, 829, 850
NlaIII CATG 3 cut(s) 521, 836, 904
NlaIV GGNNCC 3 cut(s) 6, 502, 657
PagI TCATGA 1 cut(s) 900
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PctI GAATGC 1 cut(s) 398
PdmI GAANNNNTTC 1 cut(s) 737
PfeI GAWTC 3 cut(s) 164, 440, 904
PflFI GACNNNGTC 1 cut(s) 149
PfoI TCCNGGA 1 cut(s) 670
PkrI GCNGC 9 cut(s) 248, 310, 350, 376, 397, 412, 431, 860, 895
PleI GAGTC 3 cut(s) 140, 271, 554
PpsI GAGTC 3 cut(s) 140, 271, 554
Psp6I CCWGG 2 cut(s) 443, 507
PspFI CCCAGC 3 cut(s) 7, 390, 704
PspGI CCWGG 2 cut(s) 443, 507
PspN4I GGNNCC 3 cut(s) 6, 502, 657
PspPI GGNCC 5 cut(s) 4, 393, 408, 434, 501
PsuI RGATCY 1 cut(s) 655
PsyI GACNNNGTC 1 cut(s) 149
PvuII CAGCTG 1 cut(s) 390
RseI CAYNNNNRTG 1 cut(s) 403
SaqAI TTAA 1 cut(s) 558
SatI GCNGC 9 cut(s) 247, 309, 349, 375, 396, 411, 430, 859, 894
Sau3AI GATC 4 cut(s) 655, 679, 829, 850
Sau96I GGNCC 5 cut(s) 4, 393, 408, 434, 501
SchI GAGTC 3 cut(s) 141, 272, 555
ScrFI CCNGG 6 cut(s) 214, 356, 445, 499, 509, 672
SduI GDGCHC 1 cut(s) 363
SfaNI GCATC 1 cut(s) 192
SinI GGWCC 2 cut(s) 4, 501
SmiMI CAYNNNNRTG 1 cut(s) 403
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
StyD4I CCNGG 6 cut(s) 212, 354, 443, 497, 507, 670
TaaI ACNGT 2 cut(s) 103, 565
TaiI ACGT 2 cut(s) 297, 324
TaqI TCGA 2 cut(s) 36, 261
TauI GCSGC 6 cut(s) 249, 351, 377, 398, 413, 432
TfiI GAWTC 3 cut(s) 164, 440, 904
Tru1I TTAA 1 cut(s) 558
Tru9I TTAA 1 cut(s) 558
TscAI CASTG 2 cut(s) 121, 430
TseI GCWGC 3 cut(s) 308, 858, 893
TspDTI ATGAA 5 cut(s) 468, 572, 615, 830, 889
TspGWI ACGGA 3 cut(s) 44, 84, 576
TspRI CASTG 2 cut(s) 121, 430
Tth111I GACNNNGTC 1 cut(s) 149
VpaK11BI GGWCC 2 cut(s) 4, 501
XmiI GTMKAC 1 cut(s) 282
XmnI GAANNNNTTC 1 cut(s) 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.